Prupe.6G311000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0020204
Physical Location & Seq
Forward (+)
27861823 .. 27862603
781 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G311000.1

Sequence Viewer

Length: 282 bp
ATGCAAACCCAATCGAAACTAGAGAGAAAGCAACCGCAGGCCCGGGTCACTGAAGTGAGGACAGCAGTTGAGAGAGCAAGAGAGAGAATGTCCTGGTGGTGGTCCGCGTCAGCATTCCGGTCGTTGATGGGGTGGACCTCGCGGAGCATGCTGAGGTGGTGCTTGGAGCTGAGCTTGTCGATCGTGGACGATGTCGTTTGGCCGCTAGTGACGGCGCACGAGTCCGTGGCCTTGGTCTCCATGCTCTTCTTCTTCTTTGTCTTCTGTGGACGCACTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.95

Weight (kDa)

10.05

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26790
prunus_persica Prupe.6G310900_v2.0.a1 Prupe.6G311000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0457471
rosa_roxburghii Rroxscaffold_6G00421850
rosa_wichuraiana Rw3G006940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 107, 142
AciI CCGC 4 cut(s) 35, 105, 142, 203
AcoI YGGCCR 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 72
AdeI CACNNNGTG 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 99
AjnI CCWGG 1 cut(s) 92
AleI CACNNNNGTG 1 cut(s) 53
AluBI AGCT 2 cut(s) 169, 174
AluI AGCT 2 cut(s) 169, 174
Alw26I GTCTC 1 cut(s) 241
Ama87I CYCGRG 1 cut(s) 42
AoxI GGCC 3 cut(s) 39, 200, 228
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 3 cut(s) 40, 102, 135
AsuC2I CCSGG 2 cut(s) 43, 44
AvaI CYCGRG 1 cut(s) 42
AvaII GGWCC 2 cut(s) 102, 135
BauI CACGAG 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 253
BbvCI CCTCAGC 1 cut(s) 152
BccI CCATC 1 cut(s) 121
BceAI ACGGC 1 cut(s) 228
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BciT130I CCWGG 1 cut(s) 94
BcnI CCSGG 2 cut(s) 43, 44
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 2 cut(s) 20, 206
BisI GCNGC 1 cut(s) 203
BlpI GCTNAGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 204
Bme1390I CCNGG 3 cut(s) 43, 44, 94
Bme18I GGWCC 2 cut(s) 102, 135
BmeT110I CYCGRG 1 cut(s) 42
BmgT120I GGNCC 3 cut(s) 40, 102, 135
BmrFI CCNGG 3 cut(s) 43, 44, 94
BpiI GAAGAC 1 cut(s) 253
Bpu10I CCTNAGC 1 cut(s) 152
Bpu1102I GCTNAGC 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 43, 44
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 3 cut(s) 42, 225, 231
BsaWI WCCGGW 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 3 cut(s) 42, 225, 231
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMII CTCAG 2 cut(s) 143, 161
Bsh1236I CGCG 2 cut(s) 107, 142
Bsh1285I CGRYCG 2 cut(s) 122, 183
BshFI GGCC 3 cut(s) 41, 202, 230
BsiEI CGRYCG 2 cut(s) 122, 183
BsiHKCI CYCGRG 1 cut(s) 42
BsiSI CCGG 2 cut(s) 43, 118
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 241
BsmI GAATGC 1 cut(s) 113
BsnI GGCC 3 cut(s) 41, 202, 230
Bso31I GGTCTC 1 cut(s) 241
BsoBI CYCGRG 1 cut(s) 42
Bsp143I GATC 1 cut(s) 180
Bsp1720I GCTNAGC 1 cut(s) 170
BspACI CCGC 4 cut(s) 35, 105, 142, 203
BspANI GGCC 3 cut(s) 41, 202, 230
BspCNI CTCAG 2 cut(s) 144, 162
BspFNI CGCG 2 cut(s) 107, 142
BspQI GCTCTTC 1 cut(s) 251
BspTNI GGTCTC 1 cut(s) 241
BssECI CCNNGG 3 cut(s) 42, 225, 231
BssMI GATC 1 cut(s) 180
BssSI CACGAG 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 39, 149
BstDEI CTNAG 2 cut(s) 152, 170
BstDSI CCRYGG 1 cut(s) 225
BstFNI CGCG 2 cut(s) 107, 142
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 1 cut(s) 180
BstMCI CGRYCG 2 cut(s) 122, 183
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNI CCWGG 1 cut(s) 94
BstNSI RCATGY 1 cut(s) 151
BstSCI CCNGG 3 cut(s) 41, 42, 92
BstUI CGCG 2 cut(s) 107, 142
BstV2I GAAGAC 1 cut(s) 253
BsuRI GGCC 3 cut(s) 41, 202, 230
BtgI CCRYGG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 48, 273
Cac8I GCNNGC 2 cut(s) 39, 149
CfoI GCGC 1 cut(s) 217
Cfr13I GGNCC 3 cut(s) 40, 102, 135
Cfr9I CCCGGG 1 cut(s) 42
CseI GACGC 1 cut(s) 96
CviAII CATG 2 cut(s) 148, 241
CviJI RGCY 5 cut(s) 41, 169, 174, 202, 230
CviKI_1 RGCY 5 cut(s) 41, 169, 174, 202, 230
DdeI CTNAG 2 cut(s) 152, 170
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
DraIII CACNNNGTG 1 cut(s) 279
EaeI YGGCCR 1 cut(s) 200
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 102, 135
Eco57I CTGAAG 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 2 cut(s) 151, 244
FaiI YATR 2 cut(s) 149, 242
FatI CATG 2 cut(s) 147, 240
Fnu4HI GCNGC 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 203
FspBI CTAG 2 cut(s) 20, 206
GlaI GCGC 1 cut(s) 216
GluI GCNGC 1 cut(s) 203
HaeIII GGCC 3 cut(s) 41, 202, 230
HapII CCGG 2 cut(s) 43, 118
HgaI GACGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 217
Hin1II CATG 2 cut(s) 151, 244
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HinfI GANTC 1 cut(s) 221
HpaII CCGG 2 cut(s) 43, 118
Hpy166II GTNNAC 3 cut(s) 135, 187, 269
Hpy8I GTNNAC 3 cut(s) 135, 187, 269
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 2 cut(s) 152, 170
Hsp92II CATG 2 cut(s) 151, 244
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 1 cut(s) 180
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 2 cut(s) 144, 166
LpnPI CCDG 5 cut(s) 23, 56, 79, 106, 131
MaeI CTAG 2 cut(s) 20, 206
MaeIII GTNAC 2 cut(s) 46, 208
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 4 cut(s) 238, 241, 244, 253
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 3 cut(s) 51, 147, 148
MslI CAYNNNNRTG 1 cut(s) 53
MspI CCGG 2 cut(s) 43, 118
MspR9I CCNGG 3 cut(s) 43, 44, 94
Mva1269I GAATGC 1 cut(s) 113
MvaI CCWGG 1 cut(s) 94
MvnI CGCG 2 cut(s) 107, 142
MwoI GCNNNNNNNGC 1 cut(s) 148
NciI CCSGG 2 cut(s) 43, 44
NdeII GATC 1 cut(s) 180
NlaIII CATG 2 cut(s) 151, 244
NmuCI GTSAC 2 cut(s) 46, 208
NspI RCATGY 1 cut(s) 151
OliI CACNNNNGTG 1 cut(s) 53
PaeI GCATGC 1 cut(s) 151
PciSI GCTCTTC 1 cut(s) 251
PctI GAATGC 1 cut(s) 113
PflFI GACNNNGTC 1 cut(s) 191
PkrI GCNGC 1 cut(s) 204
Ple19I CGATCG 1 cut(s) 183
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspPI GGNCC 3 cut(s) 40, 102, 135
PsyI GACNNNGTC 1 cut(s) 191
PvuI CGATCG 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 251
SatI GCNGC 1 cut(s) 203
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 3 cut(s) 40, 102, 135
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 3 cut(s) 43, 44, 94
SetI ASST 4 cut(s) 140, 158, 171, 176
SinI GGWCC 2 cut(s) 102, 135
SmaI CCCGGG 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 53
SphI GCATGC 1 cut(s) 151
SsiI CCGC 4 cut(s) 35, 105, 142, 203
SspMI CTAG 2 cut(s) 20, 206
StyD4I CCNGG 3 cut(s) 41, 42, 92
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 2 cut(s) 14, 179
TauI GCSGC 1 cut(s) 205
TscAI CASTG 2 cut(s) 55, 280
TseFI GTSAC 2 cut(s) 46, 208
Tsp45I GTSAC 2 cut(s) 46, 208
TspGWI ACGGA 1 cut(s) 214
TspMI CCCGGG 1 cut(s) 42
TspRI CASTG 2 cut(s) 55, 280
Tth111I GACNNNGTC 1 cut(s) 191
VpaK11BI GGWCC 2 cut(s) 102, 135
XceI RCATGY 1 cut(s) 151
XmaI CCCGGG 1 cut(s) 42
XspI CTAG 2 cut(s) 20, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.