Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011297

Physical Location & Seq

Genomic Coordinates Forward (+)

9984044 .. 9988967

Gene Structure 4924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1878 bp

ATGTTGATTTCAGCTGAAAAAGGAGAGATCTTGATCCCTCAATCTCCACTTAGCTCTGAATCTGTTGTTCCTTTGGTCTATACTGATGTCAATGTTGTTCCTGAACATGAAAGTAATCAGCTTGAGAAGTCAATATCAAACCTTGAAGAAGAAGTTTTTGAATTGAAGTTGAAGCTTAAGTCTTTGGATGAAAAGAGAAAGCAAGTTCTGAATAAGATTATAGACACTAAAGGAAGTATACGTGTGTTTTGTAGAGTTAGACCATTTCTATTAACGGAAAGGAGACCGATTAGGGAACCTGTTTCGTTTGGACCAGATAATGTTGTTATAAGATCTGCTGGAAGTAGTAAAGAATTTGAGTTTGATAAAGTTTTTCATCAATCAGCAACTCAAGAAGAAGTTTTCGGAGAAGTGAAACCGATTCTTAGATCTGCTCTTGATGGTCACAATGTATGTGTCTTGGCGTATGGTCAAACGGGAACTGGCAAGACTTTTACCATGGATGGCACAAGTGAGCAACCAGGTCTTGCTCCTAGAGCTATTAAAGAGCTTTTCAATGAAGCTTCAATGGACCAAACACATTCCGTGACATTTAGGATGAGTATGTTGGAAATCTACATGGGTAACTTGAAAGATTTGTTGTCTGCAAGACAGTCTTTGAAGTCATATGAAGCCTCAGCTAAATGTAACCTTAATATTCAAGTAGACTCAAAGGGTTCGGTTGAAATTGAGGGTTTGACTGAAGTGGAAGTAATGGATTTTACAAAGGCTAGATGGTGGTATAACAAAGGGAGACGAGTGAGATCAACTTCTTGGACAAATGTAAACGAAACTTCGAGCAGATCTCATTGTTTAACAAGGATCACGATCTTTCGTCGTGGAGATGCGGTGGGGTCAAAAACTGAAGTTAGCAAGCTTTGGATGATAGATCTTGGAGGAAGTGAGAGGCTCTTGAAAACAGGAGCTATAGGGCAAACTATGGATGAAGGTAGAGCCATAAACCTCTCACTTTCCGCTCTTGGAGACGTGATTGCAGCGTTAAGGAGAAAGAAGGGACATGTGCCTTACAGAAACAGCAAGCTAACTCAAATTCTTAAAGATTCTCTAGGTACTAGATCAAAAGTTCTGATGCTTGTGCACATAAGTCCACGTGATGAAGATGTTGGTGAAACAATCTGCTCTCTCAGCTTTACTAAACGTGCGAGAGCTGTAGAGTCTAACAGAGGATTAACAGCAGAACTACAAAAGCTAAGAGAAAAGAAAATATCGGAACTTGAAGAGGAAATGGAAGAAACTCAAGAAGGTTGCAAGAAGATCAAAGCGCGGTTACAGGAAGTAGAGTGTCTGGTTAATGAACACAAGAAACTCTTTTGGATCACCAATGATAAGTATCTAGAAGACATTGAAAAGAAAGCTATTTCGCCTTTAGATCATCTGAAAGACACCGATGCAACTCCAATATCATCTGATAAACTAGTCAAAATAAGGAAGAGTTCTGGTTTTGTCCCACGTTTCATGACTTCAACTGTTGCTAGTCGCCAAAGGCAAACAATGTCAGAGAAGGAAATCAATGCAAAGGCTCAGAGCATACGATCAGTGGCTAAAAATCTTACTCAGTTCTCCACTTCTCAGTCGCTTAGTCTCTCTGACTCACGAAGCAAAGCTCTCCTAAGAAGATCATACACAAAACCGCTTCAAGCTGCAGCTAACAGTGGAACACCACCAGAAACGCCTAAAAGACATATCAAAGATAATTCTTTACAGAGAAAGAATATGAATGATACTTCTTCACCAAGGAGCAAGATGGTTACTTCATCGGATCCAAATGTGAGAGCTAAACTGTGTCACCACAAACGAAGAATGTCAAGCTTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005813 GO:0005815 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0005912 GO:0005913 GO:0005915 GO:0006928 GO:0007017 GO:0007018 GO:0007155 GO:0007600 GO:0007601 GO:0008150 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022610 GO:0030054 GO:0032501 GO:0032991 GO:0034330 GO:0034331 GO:0034332 GO:0034334 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043296 GO:0043954 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045216 GO:0045217 GO:0045218 GO:0050877 GO:0050953 GO:0070161 GO:0071840 GO:0090136 GO:0098609

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

625

Amino Acids

70.3

Weight (kDa)

9.49

Isoelectric Point (pI)

56.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	1 - 238	6e-72	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27950 AT5G27950
fragaria_vesca	FvH4_6g03950 FvH4_6g03950 FvH4_6g03950
malus_domestica	MD12G1234000.v1.1
prunus_persica	Prupe.6G337000_v2.0.a1 Prupe.6G337000_v2.0.a1
pyrus_communis	pycom12g21640
rosa_chinensis	RchiOBHm_Chr3g0452501
rosa_laevigata	RLG00000025597
rosa_multiflora	Rmu_co8493577.1_g000001 Rmu_sc0011680.1_g000003
rosa_roxburghii	Rroxscaffold_6G00429530
rosa_rugosa	Rorug02G0641200
rosa_samantha	Rh3AG043100 Rh3BG044800 Rh3CG043400 Rh3DG044200
rosa_wichuraiana	Rw3G003340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	329
AccBSI	CCGCTC	1 cut(s)	1016
AccI	GTMKAC	2 cut(s)	238, 705
AccII	CGCG	1 cut(s)	1324
AciI	CCGC	4 cut(s)	887, 1014, 1324, 1691
AclWI	GGATC	5 cut(s)	28, 869, 1382, 1814, 1827
AcsI	RAATTY	2 cut(s)	353, 1089
AcuI	CTGAAG	2 cut(s)	762, 924
AcvI	CACGTG	1 cut(s)	1151
AfaI	GTAC	1 cut(s)	1111
AflII	CTTAAG	1 cut(s)	176
AflIII	ACRYGT	2 cut(s)	241, 1057
AhlI	ACTAGT	1 cut(s)	1474
AjiI	CACGTC	1 cut(s)	1027
AjnI	CCWGG	1 cut(s)	520
Alw21I	GWGCWC	1 cut(s)	1140
Alw26I	GTCTC	4 cut(s)	277, 787, 1017, 1646
Alw44I	GTGCAC	1 cut(s)	1136
AlwI	GGATC	5 cut(s)	28, 869, 1382, 1814, 1827
ApaLI	GTGCAC	1 cut(s)	1136
ApeKI	GCWGC	3 cut(s)	1034, 1700, 1703
ApoI	RAATTY	2 cut(s)	353, 1089
AspLEI	GCGC	1 cut(s)	1324
AspS9I	GGNCC	2 cut(s)	311, 571
AsuHPI	GGTGA	4 cut(s)	1178, 1369, 1782, 1838
AvaII	GGWCC	2 cut(s)	311, 571
BaeGI	GKGCMC	1 cut(s)	1140
BamHI	GGATCC	1 cut(s)	1819
BbrPI	CACGTG	1 cut(s)	1151
BbsI	GAAGAC	1 cut(s)	1404
Bbv12I	GWGCWC	1 cut(s)	1140
BbvCI	CCTCAGC	1 cut(s)	676
BbvI	GCAGC	3 cut(s)	1046, 1687, 1715
BccI	CCATC	4 cut(s)	434, 497, 768, 1798
BciT130I	CCWGG	1 cut(s)	522
BcoDI	GTCTC	4 cut(s)	277, 787, 1017, 1646
BcuI	ACTAGT	1 cut(s)	1474
BfaI	CTAG	7 cut(s)	534, 771, 1106, 1113, 1394, 1475, 1533
BfmI	CTRYAG	3 cut(s)	966, 1209, 1701
BfrI	CTTAAG	1 cut(s)	176
BglII	AGATCT	5 cut(s)	27, 332, 428, 842, 928
BisI	GCNGC	3 cut(s)	1035, 1701, 1704
BlsI	GCNGC	3 cut(s)	1036, 1702, 1705
Bme1390I	CCNGG	1 cut(s)	522
Bme18I	GGWCC	2 cut(s)	311, 571
BmgBI	CACGTC	1 cut(s)	1027
BmgT120I	GGNCC	2 cut(s)	311, 571
BmiI	GGNNCC	2 cut(s)	297, 1821
BmrFI	CCNGG	1 cut(s)	522
BmsI	GCATC	3 cut(s)	874, 1119, 1438
BpiI	GAAGAC	1 cut(s)	1404
BplI	GAGNNNNNCTC	2 cut(s)	829, 861
Bpu10I	CCTNAGC	1 cut(s)	676
BpuEI	CTTGAG	3 cut(s)	143, 375, 1281
BsaAI	YACGTR	2 cut(s)	242, 1151
BsaBI	GATNNNNATC	3 cut(s)	32, 866, 1389
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	498, 1793
BsaXI	ACNNNNNCTCC	2 cut(s)	873, 903
Bse1I	ACTGG	1 cut(s)	487
Bse8I	GATNNNNATC	3 cut(s)	32, 866, 1389
BseBI	CCWGG	1 cut(s)	522
BseDI	CCNNGG	2 cut(s)	498, 1793
BseGI	GGATG	5 cut(s)	193, 508, 603, 927, 988
BseJI	GATNNNNATC	3 cut(s)	32, 866, 1389
BseMII	CTCAG	5 cut(s)	690, 1198, 1595, 1628, 1643
BseNI	ACTGG	1 cut(s)	487
BseSI	GKGCMC	1 cut(s)	1140
BseXI	GCAGC	3 cut(s)	1046, 1687, 1715
Bsh1236I	CGCG	1 cut(s)	1324
BsiHKAI	GWGCWC	1 cut(s)	1140
BslFI	GGGAC	2 cut(s)	1068, 1490
BsmAI	GTCTC	4 cut(s)	277, 787, 1017, 1646
BsmBI	CGTCTC	2 cut(s)	787, 1017
BsmFI	GGGAC	2 cut(s)	1068, 1490
Bso31I	GGTCTC	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	1140
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	4 cut(s)	887, 1014, 1324, 1691
BspCNI	CTCAG	5 cut(s)	689, 1197, 1594, 1627, 1642
BspFNI	CGCG	1 cut(s)	1324
BspHI	TCATGA	1 cut(s)	1515
BspLI	GGNNCC	2 cut(s)	297, 1821
BspMAI	CTGCAG	1 cut(s)	1705
BspPI	GGATC	5 cut(s)	28, 869, 1382, 1814, 1827
BspTI	CTTAAG	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	277
BsrBI	CCGCTC	1 cut(s)	1016
BsrI	ACTGG	1 cut(s)	487
BssECI	CCNNGG	2 cut(s)	498, 1793
BssNAI	GTATAC	1 cut(s)	239
BssT1I	CCWWGG	2 cut(s)	498, 1793
Bst1107I	GTATAC	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	4 cut(s)	654, 1528, 1712, 1842
Bst6I	CTCTTC	2 cut(s)	1272, 1484
BstAFI	CTTAAG	1 cut(s)	176
BstBAI	YACGTR	2 cut(s)	242, 1151
BstC8I	GCNNGC	2 cut(s)	914, 1079
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	5 cut(s)	193, 508, 603, 927, 988
BstFNI	CGCG	1 cut(s)	1324
BstHHI	GCGC	1 cut(s)	1324
BstMAI	GTCTC	4 cut(s)	277, 787, 1017, 1646
BstMWI	GCNNNNNNNGC	2 cut(s)	536, 1185
BstNI	CCWGG	1 cut(s)	522
BstNSI	RCATGY	1 cut(s)	1061
BstSCI	CCNGG	1 cut(s)	520
BstSFI	CTRYAG	3 cut(s)	966, 1209, 1701
BstSLI	GKGCMC	1 cut(s)	1140
BstUI	CGCG	1 cut(s)	1324
BstV1I	GCAGC	3 cut(s)	1046, 1687, 1715
BstV2I	GAAGAC	1 cut(s)	1404
BstX2I	RGATCY	6 cut(s)	27, 332, 428, 842, 928, 1819
BstYI	RGATCY	6 cut(s)	27, 332, 428, 842, 928, 1819
BstZ17I	GTATAC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	498
BtrI	CACGTC	1 cut(s)	1027
BtsCI	GGATG	5 cut(s)	193, 508, 603, 927, 988
BtsIMutI	CAGTG	2 cut(s)	1602, 1717
Cac8I	GCNNGC	2 cut(s)	914, 1079
CciI	TCATGA	1 cut(s)	1515
CfoI	GCGC	1 cut(s)	1324
Cfr13I	GGNCC	2 cut(s)	311, 571
CsiI	ACCWGGT	1 cut(s)	520
Csp6I	GTAC	1 cut(s)	1110
CviAII	CATG	6 cut(s)	107, 499, 619, 1058, 1516, 1875
CviQI	GTAC	1 cut(s)	1110
Eam1104I	CTCTTC	2 cut(s)	1272, 1484
EarI	CTCTTC	2 cut(s)	1272, 1484
Eco130I	CCWWGG	2 cut(s)	498, 1793
Eco31I	GGTCTC	1 cut(s)	277
Eco47I	GGWCC	2 cut(s)	311, 571
Eco57I	CTGAAG	2 cut(s)	762, 924
Eco72I	CACGTG	1 cut(s)	1151
EcoRII	CCWGG	1 cut(s)	520
EcoT14I	CCWWGG	2 cut(s)	498, 1793
ErhI	CCWWGG	2 cut(s)	498, 1793
Esp3I	CGTCTC	2 cut(s)	787, 1017
FaeI	CATG	6 cut(s)	110, 502, 622, 1061, 1519, 1878
FalI	AAGNNNNNCTT	4 cut(s)	640, 672, 1352, 1384
FaqI	GGGAC	2 cut(s)	1068, 1490
FatI	CATG	6 cut(s)	106, 498, 618, 1057, 1515, 1874
FauNDI	CATATG	1 cut(s)	667
FblI	GTMKAC	2 cut(s)	238, 705
Fnu4HI	GCNGC	3 cut(s)	1035, 1701, 1704
FokI	GGATG	5 cut(s)	200, 515, 610, 934, 995
Fsp4HI	GCNGC	3 cut(s)	1035, 1701, 1704
FspBI	CTAG	7 cut(s)	534, 771, 1106, 1113, 1394, 1475, 1533
GlaI	GCGC	1 cut(s)	1323
GluI	GCNGC	3 cut(s)	1035, 1701, 1704
HhaI	GCGC	1 cut(s)	1324
Hin1II	CATG	6 cut(s)	110, 502, 622, 1061, 1519, 1878
Hin6I	GCGC	1 cut(s)	1322
HinP1I	GCGC	1 cut(s)	1322
HindIII	AAGCTT	4 cut(s)	173, 561, 914, 1867
HinfI	GANTC	6 cut(s)	59, 421, 707, 1100, 1214, 1649
HphI	GGTGA	4 cut(s)	1178, 1369, 1782, 1838
Hpy166II	GTNNAC	5 cut(s)	239, 706, 826, 1138, 1148
Hpy8I	GTNNAC	5 cut(s)	239, 706, 826, 1138, 1148
Hpy99I	CGWCG	1 cut(s)	879
HpyAV	CCTTC	4 cut(s)	980, 1045, 1295, 1555
HpyCH4III	ACNGT	4 cut(s)	654, 1528, 1712, 1842
HpyCH4IV	ACGT	5 cut(s)	241, 1026, 1150, 1198, 1510
HpyCH4V	TGCA	7 cut(s)	647, 1034, 1138, 1308, 1451, 1574, 1703
HpyF10VI	GCNNNNNNNGC	2 cut(s)	536, 1185
HpySE526I	ACGT	5 cut(s)	241, 1026, 1150, 1198, 1510
Hsp92II	CATG	6 cut(s)	110, 502, 622, 1061, 1519, 1878
HspAI	GCGC	1 cut(s)	1322
LmnI	GCTCC	3 cut(s)	535, 962, 1797
Lsp1109I	GCAGC	3 cut(s)	1046, 1687, 1715
LweI	GCATC	3 cut(s)	874, 1119, 1438
MabI	ACCWGGT	1 cut(s)	520
MaeI	CTAG	7 cut(s)	534, 771, 1106, 1113, 1394, 1475, 1533
MaeII	ACGT	5 cut(s)	241, 1026, 1150, 1198, 1510
MaeIII	GTNAC	7 cut(s)	443, 586, 623, 686, 1326, 1807, 1844
MbiI	CCGCTC	1 cut(s)	1016
MflI	RGATCY	6 cut(s)	27, 332, 428, 842, 928, 1819
MhlI	GDGCHC	1 cut(s)	1140
MluCI	AATT	5 cut(s)	161, 353, 726, 1089, 1753
MlyI	GAGTC	3 cut(s)	701, 1223, 1643
MmeI	TCCRAC	1 cut(s)	588
MnlI	CCTC	8 cut(s)	48, 685, 724, 929, 939, 1013, 1217, 1273
MseI	TTAA	9 cut(s)	177, 272, 543, 693, 854, 1040, 1095, 1229, 1350
MspA1I	CMGCKG	1 cut(s)	14
MspCI	CTTAAG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	522
MvaI	CCWGG	1 cut(s)	522
MvnI	CGCG	1 cut(s)	1324
MwoI	GCNNNNNNNGC	2 cut(s)	536, 1185
NcoI	CCATGG	1 cut(s)	498
NdeI	CATATG	1 cut(s)	667
NlaIII	CATG	6 cut(s)	110, 502, 622, 1061, 1519, 1878
NlaIV	GGNNCC	2 cut(s)	297, 1821
NmuCI	GTSAC	3 cut(s)	443, 586, 1844
NspI	RCATGY	1 cut(s)	1061
PagI	TCATGA	1 cut(s)	1515
PciI	ACATGT	1 cut(s)	1057
PfeI	GAWTC	3 cut(s)	59, 421, 1100
PkrI	GCNGC	3 cut(s)	1036, 1702, 1705
PleI	GAGTC	3 cut(s)	701, 1222, 1643
PmaCI	CACGTG	1 cut(s)	1151
PmlI	CACGTG	1 cut(s)	1151
PpsI	GAGTC	3 cut(s)	701, 1222, 1643
Ppu21I	YACGTR	2 cut(s)	242, 1151
PscI	ACATGT	1 cut(s)	1057
PsiI	TTATAA	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	520
PspCI	CACGTG	1 cut(s)	1151
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	2 cut(s)	297, 1821
PspPI	GGNCC	2 cut(s)	311, 571
PstI	CTGCAG	1 cut(s)	1705
PsuI	RGATCY	6 cut(s)	27, 332, 428, 842, 928, 1819
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	1111
RsaNI	GTAC	1 cut(s)	1110
SaqAI	TTAA	9 cut(s)	177, 272, 543, 693, 854, 1040, 1095, 1229, 1350
SatI	GCNGC	3 cut(s)	1035, 1701, 1704
Sau96I	GGNCC	2 cut(s)	311, 571
SchI	GAGTC	3 cut(s)	701, 1223, 1643
ScrFI	CCNGG	1 cut(s)	522
SduI	GDGCHC	1 cut(s)	1140
SexAI	ACCWGGT	1 cut(s)	520
SfaNI	GCATC	3 cut(s)	874, 1119, 1438
SfcI	CTRYAG	3 cut(s)	966, 1209, 1701
SinI	GGWCC	2 cut(s)	311, 571
SmlI	CTYRAG	4 cut(s)	122, 176, 390, 1296
SmoI	CTYRAG	4 cut(s)	122, 176, 390, 1296
SpeI	ACTAGT	1 cut(s)	1474
Sse9I	AATT	5 cut(s)	161, 353, 726, 1089, 1753
SsiI	CCGC	4 cut(s)	887, 1014, 1324, 1691
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	7 cut(s)	534, 771, 1106, 1113, 1394, 1475, 1533
StyD4I	CCNGG	1 cut(s)	520
StyI	CCWWGG	2 cut(s)	498, 1793
TaaI	ACNGT	4 cut(s)	654, 1528, 1712, 1842
TaiI	ACGT	5 cut(s)	244, 1029, 1153, 1201, 1513
TaqI	TCGA	1 cut(s)	836
TaqII	GACCGA	1 cut(s)	301
TasI	AATT	5 cut(s)	161, 353, 726, 1089, 1753
TfiI	GAWTC	3 cut(s)	59, 421, 1100
Tru1I	TTAA	9 cut(s)	177, 272, 543, 693, 854, 1040, 1095, 1229, 1350
Tru9I	TTAA	9 cut(s)	177, 272, 543, 693, 854, 1040, 1095, 1229, 1350
TscAI	CASTG	2 cut(s)	1602, 1717
TseFI	GTSAC	3 cut(s)	443, 586, 1844
TseI	GCWGC	3 cut(s)	1034, 1700, 1703
Tsp45I	GTSAC	3 cut(s)	443, 586, 1844
TspGWI	ACGGA	2 cut(s)	290, 574
TspRI	CASTG	2 cut(s)	1602, 1717
Vha464I	CTTAAG	1 cut(s)	176
VneI	GTGCAC	1 cut(s)	1136
VpaK11BI	GGWCC	2 cut(s)	311, 571
XapI	RAATTY	2 cut(s)	353, 1089
XbaI	TCTAGA	1 cut(s)	1393
XceI	RCATGY	1 cut(s)	1061
XmiI	GTMKAC	2 cut(s)	238, 705
XspI	CTAG	7 cut(s)	534, 771, 1106, 1113, 1394, 1475, 1533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.