Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8493577.1

Orthogroup ID

OG0011297

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2625

Gene Structure 2625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8493577.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1567 bp

gtgaagcagaagctatgggatgagaagaggagagaagctttgaataagatcatagacatcaaaggcagtattcgagtgttttgtcgagttagaccattcctagtgatcaacaagagaagaattcgcgaacccatttcagctggatcagagaagattgtggtgaagtcttctggagcaagaaaggaatttgagtttgataaggtctttccccaagaaacaagccaagaaaatatatttgctgaggtggaaccaattctcagatctgcacttgatggtcataatgtgtgtgtttttgctcatggtcaaactggcactggcaagacatttaccatggatggcacaaatgaagagccaggaatcattcctagagctctccgagagatcttcagtcaagcctcgttggattgctcgtcttctttaacgttttcgatgagcatgttggaagtttacatgggcaatctcagggatctactatccccaaaagcagcctcaagaccacatgaaactgtaacaagatgcaatctcagcattcaaacagatacaaagggtttcatagaaatcgagggtcttacagaagttccggttcttgattttgctaaagctagatggtggtataatcgggggaagcgagttagatctactgcttggactaatgtgaacgaggcatctagcaggtctcactgcttaacgaggataaccatattccgacatggagatgctttggtagccaaaagggaagtgagcaaactatggttggttgatcttggtggaagcgaaagattgcttaaaacaggagcaactggactaacactggatgagggaagggccataaatctttctctctcatctttgggggatgttattgctgctctgagaaggaaacgaggccatgtgccttacaggaatagcaaacttacacagatccttaaagattccttaggtcatggttcaaaggttttgatgcttgtgcatgtcagcccatgtgaagaagatgttgcggagacaatctgttctttgagctttgcaaagagggcaagggctatagagaataacagggacatatcagaggacctgaagaagcaaaaggagaaaaggatcaaggagattgaaaatgatatgagagaagcagaagaagaatgtcaaaaagttaaaaatcaaatacagaaggctgagttactgttacatgaaaacataaagctcttctcaaccactcatagaccttctgaagatgaggaggcccccattagtcccaaagaagttgtgaaggaagtcatagaaacacctcgaaagcctgagaaagcaagtagaggaactgcaaattctttgccacggttcatgacttccactgcagccagtcgacatagacaaaatgctgtagaaagacagattgctggcaaagcaagaagcttgagatcatatgtgaccaaaagctcaatccaattctcggcttcacagtcaatgagttactcctcagatgctcggttcagagccattttgaaaaattcaaacagaaagtcccgatattcactggaaacagatactgtccctgcagagagtcccaggtgcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005813 GO:0005815 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0005912 GO:0005913 GO:0005915 GO:0006928 GO:0007017 GO:0007018 GO:0007155 GO:0007600 GO:0007601 GO:0008150 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022610 GO:0030054 GO:0032501 GO:0032991 GO:0034330 GO:0034331 GO:0034332 GO:0034334 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043296 GO:0043954 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045216 GO:0045217 GO:0045218 GO:0050877 GO:0050953 GO:0070161 GO:0071840 GO:0090136 GO:0098609

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

522

Amino Acids

58.84

Weight (kDa)

9.58

Isoelectric Point (pI)

54.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27950 AT5G27950
fragaria_vesca	FvH4_6g03950 FvH4_6g03950 FvH4_6g03950
malus_domestica	MD12G1234000.v1.1
prunus_persica	Prupe.6G337000_v2.0.a1 Prupe.6G337000_v2.0.a1
pyrus_communis	pycom12g21640
rosa_chinensis	RchiOBHm_Chr3g0452501
rosa_laevigata	RLG00000025597
rosa_multiflora	Rmu_co8493577.1_g000001 Rmu_sc0011680.1_g000003
rosa_roxburghii	Rroxscaffold_6G00429530
rosa_rugosa	Rorug02G0641200
rosa_samantha	Rh3AG043100 Rh3BG044800 Rh3CG043400 Rh3DG044200
rosa_wichuraiana	Rw3G003340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	663
AccB1I	GGYRCC	1 cut(s)	1563
AccI	GTMKAC	1 cut(s)	1357
AccII	CGCG	1 cut(s)	126
AciI	CCGC	1 cut(s)	998
AclI	AACGTT	1 cut(s)	422
AclWI	GGATC	4 cut(s)	151, 474, 916, 1103
AcsI	RAATTY	4 cut(s)	120, 185, 1318, 1501
AcuI	CTGAAG	3 cut(s)	370, 1094, 1245
AfiI	CCNNNNNNNGG	1 cut(s)	1444
AgsI	TTSAA	6 cut(s)	43, 533, 951, 1109, 1498, 1506
AjnI	CCWGG	2 cut(s)	352, 1559
AluBI	AGCT	9 cut(s)	13, 38, 140, 371, 602, 1020, 1198, 1407, 1431
AluI	AGCT	9 cut(s)	13, 38, 140, 371, 602, 1020, 1198, 1407, 1431
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	2 cut(s)	681, 995
AlwI	GGATC	4 cut(s)	151, 474, 916, 1103
AlwNI	CAGNNNCTG	1 cut(s)	1541
AoxI	GGCC	3 cut(s)	825, 886, 1236
ApeKI	GCWGC	3 cut(s)	485, 866, 1349
ApoI	RAATTY	4 cut(s)	120, 185, 1318, 1501
ArsI	GACNNNNNNTTYG	2 cut(s)	1499, 1531
Asp700I	GAANNNNTTC	1 cut(s)	252
AspS9I	GGNCC	3 cut(s)	825, 1069, 1237
AsuHPI	GGTGA	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	1069
AxyI	CCTNAGG	1 cut(s)	937
BanI	GGYRCC	1 cut(s)	1563
BanII	GRGCYC	1 cut(s)	373
BbsI	GAAGAC	2 cut(s)	159, 405
Bbv12I	GWGCWC	1 cut(s)	373
BbvCI	CCTCAGC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	497, 853, 1361
BccI	CCATC	3 cut(s)	266, 329, 600
BciT130I	CCWGG	2 cut(s)	354, 1561
BclI	TGATCA	1 cut(s)	105
BcoDI	GTCTC	2 cut(s)	681, 995
BfaI	CTAG	4 cut(s)	101, 366, 603, 669
BfmI	CTRYAG	4 cut(s)	1041, 1347, 1374, 1548
BfuAI	ACCTGC	1 cut(s)	663
BglII	AGATCT	3 cut(s)	260, 381, 635
BisI	GCNGC	3 cut(s)	486, 867, 1350
BlsI	GCNGC	3 cut(s)	487, 868, 1351
Bme1390I	CCNGG	2 cut(s)	354, 1561
Bme18I	GGWCC	1 cut(s)	1069
BmgT120I	GGNCC	3 cut(s)	825, 1069, 1237
BmiI	GGNNCC	3 cut(s)	249, 1239, 1565
BmrFI	CCNGG	2 cut(s)	354, 1561
BmsI	GCATC	5 cut(s)	506, 674, 706, 951, 1465
BpiI	GAAGAC	2 cut(s)	159, 405
BpmI	CTGGAG	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	475, 1429
BsaI	GGTCTC	1 cut(s)	681
BsaJI	CCNNGG	3 cut(s)	330, 1328, 1559
BsaWI	WCCGGW	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	1 cut(s)	1444
Bse1I	ACTGG	6 cut(s)	313, 319, 805, 816, 1353, 1533
Bse21I	CCTNAGG	1 cut(s)	937
BseBI	CCWGG	2 cut(s)	354, 1561
BseDI	CCNNGG	3 cut(s)	330, 1328, 1559
BseGI	GGATG	4 cut(s)	25, 340, 820, 862
BseLI	CCNNNNNNNGG	1 cut(s)	1444
BseMII	CTCAG	8 cut(s)	231, 271, 475, 538, 863, 1161, 1284, 1485
BseNI	ACTGG	6 cut(s)	313, 319, 805, 816, 1353, 1533
BseRI	GAGGAG	3 cut(s)	43, 1247, 1459
BseXI	GCAGC	3 cut(s)	497, 853, 1361
BsgI	GTGCAG	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	3 cut(s)	827, 888, 1238
BshNI	GGYRCC	1 cut(s)	1563
BsiHKAI	GWGCWC	1 cut(s)	373
BsiSI	CCGG	1 cut(s)	581
BslFI	GGGAC	5 cut(s)	1070, 1233, 1501, 1529, 1542
BslI	CCNNNNNNNGG	1 cut(s)	1444
BsmAI	GTCTC	2 cut(s)	681, 995
BsmFI	GGGAC	5 cut(s)	1070, 1233, 1501, 1529, 1542
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	3 cut(s)	827, 888, 1238
Bso31I	GGTCTC	1 cut(s)	681
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp19I	CCATGG	1 cut(s)	330
Bsp68I	TCGCGA	1 cut(s)	126
BspACI	CCGC	1 cut(s)	998
BspANI	GGCC	3 cut(s)	827, 888, 1238
BspCNI	CTCAG	8 cut(s)	232, 270, 474, 537, 864, 1162, 1285, 1484
BspFNI	CGCG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	1335
BspLI	GGNNCC	3 cut(s)	249, 1239, 1565
BspMAI	CTGCAG	2 cut(s)	1351, 1552
BspMI	ACCTGC	1 cut(s)	663
BspPI	GGATC	4 cut(s)	151, 474, 916, 1103
BspQI	GCTCTTC	2 cut(s)	342, 1205
BspT107I	GGYRCC	1 cut(s)	1563
BspTNI	GGTCTC	1 cut(s)	681
BsrI	ACTGG	6 cut(s)	313, 319, 805, 816, 1353, 1533
BssECI	CCNNGG	3 cut(s)	330, 1328, 1559
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	2 cut(s)	354, 1561
Bst4CI	ACNGT	5 cut(s)	508, 1179, 1332, 1455, 1543
Bst6I	CTCTTC	3 cut(s)	20, 342, 1205
BstC8I	GCNNGC	1 cut(s)	1393
BstDEI	CTNAG	9 cut(s)	240, 257, 461, 524, 872, 937, 1170, 1293, 1471
BstDSI	CCRYGG	2 cut(s)	330, 1328
BstF5I	GGATG	4 cut(s)	25, 340, 820, 862
BstFNI	CGCG	1 cut(s)	126
BstMAI	GTCTC	2 cut(s)	681, 995
BstMWI	GCNNNNNNNGC	4 cut(s)	525, 725, 1031, 1397
BstNI	CCWGG	2 cut(s)	354, 1561
BstNSI	RCATGY	2 cut(s)	439, 974
BstSCI	CCNGG	2 cut(s)	352, 1559
BstSFI	CTRYAG	4 cut(s)	1041, 1347, 1374, 1548
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	3 cut(s)	497, 853, 1361
BstV2I	GAAGAC	2 cut(s)	159, 405
BstX2I	RGATCY	5 cut(s)	260, 381, 466, 635, 921
BstYI	RGATCY	5 cut(s)	260, 381, 466, 635, 921
Bsu36I	CCTNAGG	1 cut(s)	937
BsuRI	GGCC	3 cut(s)	827, 888, 1238
BtgI	CCRYGG	2 cut(s)	330, 1328
BtsCI	GGATG	4 cut(s)	25, 340, 820, 862
BtsI	GCAGTG	2 cut(s)	679, 1344
BtsIMutI	CAGTG	5 cut(s)	312, 679, 809, 1344, 1526
BtuMI	TCGCGA	1 cut(s)	126
BveI	ACCTGC	1 cut(s)	663
Cac8I	GCNNGC	1 cut(s)	1393
CaiI	CAGNNNCTG	1 cut(s)	1541
CciI	TCATGA	1 cut(s)	1335
Cfr13I	GGNCC	3 cut(s)	825, 1069, 1237
DdeI	CTNAG	9 cut(s)	240, 257, 461, 524, 872, 937, 1170, 1293, 1471
Eam1104I	CTCTTC	3 cut(s)	20, 342, 1205
EarI	CTCTTC	3 cut(s)	20, 342, 1205
Ecl136II	GAGCTC	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	373
Eco31I	GGTCTC	1 cut(s)	681
Eco47I	GGWCC	1 cut(s)	1069
Eco53kI	GAGCTC	1 cut(s)	371
Eco57I	CTGAAG	3 cut(s)	370, 1094, 1245
Eco81I	CCTNAGG	1 cut(s)	937
EcoICRI	GAGCTC	1 cut(s)	371
EcoO109I	RGGNCCY	2 cut(s)	1069, 1237
EcoRI	GAATTC	1 cut(s)	120
EcoRII	CCWGG	2 cut(s)	352, 1559
EcoT14I	CCWWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	330
FaqI	GGGAC	5 cut(s)	1070, 1233, 1501, 1529, 1542
FauNDI	CATATG	1 cut(s)	1417
FbaI	TGATCA	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	1357
Fnu4HI	GCNGC	3 cut(s)	486, 867, 1350
FokI	GGATG	4 cut(s)	32, 347, 827, 869
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	3 cut(s)	486, 867, 1350
FspBI	CTAG	4 cut(s)	101, 366, 603, 669
GluI	GCNGC	3 cut(s)	486, 867, 1350
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	3 cut(s)	827, 888, 1238
HapII	CCGG	1 cut(s)	581
HincII	GTYRAC	1 cut(s)	1358
HindII	GTYRAC	1 cut(s)	1358
HindIII	AAGCTT	2 cut(s)	36, 1405
HinfI	GANTC	3 cut(s)	357, 932, 1555
HpaII	CCGG	1 cut(s)	581
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	3 cut(s)	448, 658, 1358
Hpy188I	TCNGA	9 cut(s)	148, 260, 377, 707, 873, 1066, 1225, 1474, 1487
Hpy188III	TCNNGA	6 cut(s)	125, 171, 492, 587, 1336, 1518
Hpy8I	GTNNAC	3 cut(s)	448, 658, 1358
HpyAV	CCTTC	5 cut(s)	816, 870, 1159, 1230, 1258
HpyCH4III	ACNGT	5 cut(s)	508, 1179, 1332, 1455, 1543
HpyCH4IV	ACGT	1 cut(s)	422
HpyCH4V	TGCA	7 cut(s)	266, 519, 970, 1025, 1316, 1349, 1550
HpyF10VI	GCNNNNNNNGC	4 cut(s)	525, 725, 1031, 1397
HpyF3I	CTNAG	9 cut(s)	240, 257, 461, 524, 872, 937, 1170, 1293, 1471
HpySE526I	ACGT	1 cut(s)	422
Ksp22I	TGATCA	1 cut(s)	105
LguI	GCTCTTC	2 cut(s)	342, 1205
LmnI	GCTCC	2 cut(s)	173, 794
Lsp1109I	GCAGC	3 cut(s)	497, 853, 1361
LweI	GCATC	5 cut(s)	506, 674, 706, 951, 1465
MaeI	CTAG	4 cut(s)	101, 366, 603, 669
MaeII	ACGT	1 cut(s)	422
MaeIII	GTNAC	5 cut(s)	508, 1173, 1179, 1420, 1463
MflI	RGATCY	5 cut(s)	260, 381, 466, 635, 921
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	6 cut(s)	120, 185, 252, 1318, 1439, 1501
MlyI	GAGTC	1 cut(s)	1564
MmeI	TCCRAC	3 cut(s)	381, 420, 730
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	5 cut(s)	419, 686, 786, 927, 1149
MslI	CAYNNNNRTG	1 cut(s)	714
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	581
MspR9I	CCNGG	2 cut(s)	354, 1561
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	2 cut(s)	354, 1561
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	4 cut(s)	525, 725, 1031, 1397
NcoI	CCATGG	1 cut(s)	330
NdeI	CATATG	1 cut(s)	1417
NlaIV	GGNNCC	3 cut(s)	249, 1239, 1565
NmeAIII	GCCGAG	1 cut(s)	1424
NmuCI	GTSAC	1 cut(s)	1420
NruI	TCGCGA	1 cut(s)	126
NspI	RCATGY	2 cut(s)	439, 974
PagI	TCATGA	1 cut(s)	1335
PciSI	GCTCTTC	2 cut(s)	342, 1205
PcsI	WCGNNNNNNNCGW	1 cut(s)	625
PctI	GAATGC	1 cut(s)	528
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	357, 932
PkrI	GCNGC	3 cut(s)	487, 868, 1351
PleI	GAGTC	1 cut(s)	1563
PpsI	GAGTC	1 cut(s)	1563
PpuMI	RGGWCCY	1 cut(s)	1069
Psp124BI	GAGCTC	1 cut(s)	373
Psp1406I	AACGTT	1 cut(s)	422
Psp5II	RGGWCCY	1 cut(s)	1069
Psp6I	CCWGG	2 cut(s)	352, 1559
PspGI	CCWGG	2 cut(s)	352, 1559
PspN4I	GGNNCC	3 cut(s)	249, 1239, 1565
PspPI	GGNCC	3 cut(s)	825, 1069, 1237
PspPPI	RGGWCCY	1 cut(s)	1069
PstI	CTGCAG	2 cut(s)	1351, 1552
PstNI	CAGNNNCTG	1 cut(s)	1541
PsuI	RGATCY	5 cut(s)	260, 381, 466, 635, 921
PvuII	CAGCTG	1 cut(s)	140
RruI	TCGCGA	1 cut(s)	126
RseI	CAYNNNNRTG	1 cut(s)	714
SacI	GAGCTC	1 cut(s)	373
SalI	GTCGAC	1 cut(s)	1356
SapI	GCTCTTC	2 cut(s)	342, 1205
SaqAI	TTAA	5 cut(s)	419, 686, 786, 927, 1149
SatI	GCNGC	3 cut(s)	486, 867, 1350
Sau96I	GGNCC	3 cut(s)	825, 1069, 1237
SchI	GAGTC	1 cut(s)	1564
ScrFI	CCNGG	2 cut(s)	354, 1561
SduI	GDGCHC	1 cut(s)	373
SfaNI	GCATC	5 cut(s)	506, 674, 706, 951, 1465
SfcI	CTRYAG	4 cut(s)	1041, 1347, 1374, 1548
SinI	GGWCC	1 cut(s)	1069
SmiMI	CAYNNNNRTG	1 cut(s)	714
SmlI	CTYRAG	2 cut(s)	490, 1408
SmoI	CTYRAG	2 cut(s)	490, 1408
Sse9I	AATT	6 cut(s)	120, 185, 252, 1318, 1439, 1501
SsiI	CCGC	1 cut(s)	998
SspMI	CTAG	4 cut(s)	101, 366, 603, 669
SstI	GAGCTC	1 cut(s)	373
StyD4I	CCNGG	2 cut(s)	352, 1559
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	5 cut(s)	508, 1179, 1332, 1455, 1543
TaiI	ACGT	1 cut(s)	425
TaqI	TCGA	6 cut(s)	73, 85, 428, 561, 1285, 1357
TasI	AATT	6 cut(s)	120, 185, 252, 1318, 1439, 1501
TfiI	GAWTC	2 cut(s)	357, 932
Tru1I	TTAA	5 cut(s)	419, 686, 786, 927, 1149
Tru9I	TTAA	5 cut(s)	419, 686, 786, 927, 1149
TscAI	CASTG	5 cut(s)	319, 686, 816, 1351, 1533
TseFI	GTSAC	1 cut(s)	1420
TseI	GCWGC	3 cut(s)	485, 866, 1349
Tsp45I	GTSAC	1 cut(s)	1420
TspDTI	ATGAA	5 cut(s)	360, 516, 541, 1200, 1324
TspRI	CASTG	5 cut(s)	319, 686, 816, 1351, 1533
VpaK11BI	GGWCC	1 cut(s)	1069
XapI	RAATTY	4 cut(s)	120, 185, 1318, 1501
XceI	RCATGY	2 cut(s)	439, 974
XmiI	GTMKAC	1 cut(s)	1357
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	4 cut(s)	101, 366, 603, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.