AT5G39715

Lysine histidine transporter-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
15898233 .. 15899136
904 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G39715.1

Sequence Viewer

Length: 336 bp
ATGGTATTTGCAATGCCCGTATTTGATGGAATAGAGTCGTGTCTGGTGAAGAATCTCAAGTTCACTCCTTCCACATGCCTTCGTATTGTGGGACGTACTTCATACGTTGCGTTGGTGGGATTTATAGCAGTATATATTCCATTTTTTCGGCGGTCTTGTTTTCTCCTCAACGTCCTACTTCTTGCCATGCATTATATGGTTGGTCATGAAACAACAAAAACGTTGGAGCTTTCATTGGATTGCATCTTGGATCTCGATAATAGTTGGAGTCCTAATCGCGGTGTTAGCACCAATAGGTGGAGCGAGACAGATCATCCTTCAAGCCAAAACCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.56

Weight (kDa)

6.8

Isoelectric Point (pI)

68.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39715
rosa_chinensis RchiOBHm_Chr4g0410801 RchiOBHm_Chr5g0026791
rosa_samantha Rh4DG186600 Rh7DG412600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 297
AccII CGCG 1 cut(s) 279
AciI CCGC 2 cut(s) 151, 279
AclI AACGTT 1 cut(s) 221
AclWI GGATC 1 cut(s) 258
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 2 cut(s) 278, 297
AgsI TTSAA 1 cut(s) 321
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 58
BccI CCATC 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 299
BmsI GCATC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 41
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 297
Bse3DI GCAATG 1 cut(s) 18
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 2 cut(s) 278, 297
BseMI GCAATG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 279
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 2 cut(s) 278, 297
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 105
Bsp143I GATC 2 cut(s) 250, 310
BspACI CCGC 2 cut(s) 151, 279
BspFNI CGCG 1 cut(s) 279
BspHI TCATGA 1 cut(s) 205
BspPI GGATC 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 18
BssMI GATC 2 cut(s) 250, 310
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 279
BstKTI GATC 2 cut(s) 253, 313
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 2 cut(s) 250, 310
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 78
BstUI CGCG 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BtsCI GGATG 1 cut(s) 313
CciI TCATGA 1 cut(s) 205
Csp6I GTAC 1 cut(s) 96
CviAII CATG 3 cut(s) 75, 187, 206
CviJI RGCY 2 cut(s) 229, 324
CviKI_1 RGCY 2 cut(s) 229, 324
CviQI GTAC 1 cut(s) 96
DpnI GATC 2 cut(s) 252, 312
DpnII GATC 2 cut(s) 250, 310
EcoT22I ATGCAT 1 cut(s) 192
FaeI CATG 3 cut(s) 78, 190, 209
FaqI GGGAC 1 cut(s) 105
FatI CATG 3 cut(s) 74, 186, 205
FokI GGATG 1 cut(s) 300
Hin1II CATG 3 cut(s) 78, 190, 209
HinfI GANTC 3 cut(s) 35, 52, 268
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 63
Hpy188III TCNNGA 2 cut(s) 206, 254
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 3 cut(s) 78, 89, 327
HpyCH4IV ACGT 4 cut(s) 94, 105, 171, 221
HpyCH4V TGCA 3 cut(s) 11, 190, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpySE526I ACGT 4 cut(s) 94, 105, 171, 221
Hsp92II CATG 3 cut(s) 78, 190, 209
Kzo9I GATC 2 cut(s) 250, 310
LmnI GCTCC 2 cut(s) 226, 300
LpnPI CCDG 1 cut(s) 29
LweI GCATC 1 cut(s) 252
MaeII ACGT 4 cut(s) 94, 105, 171, 221
MalI GATC 2 cut(s) 252, 312
MboI GATC 2 cut(s) 250, 310
MboII GAAGA 1 cut(s) 61
MflI RGATCY 1 cut(s) 250
MlyI GAGTC 2 cut(s) 44, 277
MmeI TCCRAC 2 cut(s) 204, 245
MnlI CCTC 1 cut(s) 176
Mph1103I ATGCAT 1 cut(s) 192
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 285
NdeII GATC 2 cut(s) 250, 310
NlaIII CATG 3 cut(s) 78, 190, 209
NsiI ATGCAT 1 cut(s) 192
NspI RCATGY 1 cut(s) 78
PagI TCATGA 1 cut(s) 205
PfeI GAWTC 1 cut(s) 52
PflMI CCANNNNNTGG 1 cut(s) 297
PleI GAGTC 2 cut(s) 43, 276
PpsI GAGTC 2 cut(s) 43, 276
Psp1406I AACGTT 1 cut(s) 221
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 250, 310
SchI GAGTC 2 cut(s) 44, 277
SetI ASST 7 cut(s) 97, 108, 174, 224, 231, 299, 333
SfaNI GCATC 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SsiI CCGC 2 cut(s) 151, 279
TaiI ACGT 4 cut(s) 97, 108, 174, 224
TaqI TCGA 1 cut(s) 255
TfiI GAWTC 1 cut(s) 52
TspDTI ATGAA 3 cut(s) 90, 222, 222
Van91I CCANNNNNTGG 1 cut(s) 297
XceI RCATGY 1 cut(s) 78
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
Zsp2I ATGCAT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.