RchiOBHm_Chr5g0026791

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
20786897 .. 20788681
1785 bp
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UTR
Exon/CDS
Intron
PRQ30637

Sequence Viewer

Length: 135 bp
ATGATGCTCAGCTGTATTTCAAAGAGTCAACGAAATTCGAACCAGTGGAACATACGTTGCCTCCAATTCCGCAGTATGCATTTCATCTTCTTGATTTTAATTAAAAGGTATGAAAAAGTTGCACTTGAGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

44

Amino Acids

5.44

Weight (kDa)

9.89

Isoelectric Point (pI)

70.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39715
rosa_chinensis RchiOBHm_Chr4g0410801 RchiOBHm_Chr5g0026791
rosa_samantha Rh4DG186600 Rh7DG412600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 70
AcsI RAATTY 1 cut(s) 34
AfaI GTAC 1 cut(s) 131
AgsI TTSAA 1 cut(s) 21
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
ApoI RAATTY 1 cut(s) 34
AsuII TTCGAA 1 cut(s) 38
BlpI GCTNAGC 1 cut(s) 8
BmcAI AGTACT 1 cut(s) 131
Bpu1102I GCTNAGC 1 cut(s) 8
Bpu14I TTCGAA 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bse1I ACTGG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 43
Bsp119I TTCGAA 1 cut(s) 38
Bsp1720I GCTNAGC 1 cut(s) 8
BspACI CCGC 1 cut(s) 70
BspCNI CTCAG 1 cut(s) 21
BspT104I TTCGAA 1 cut(s) 38
BsrI ACTGG 1 cut(s) 43
BstBI TTCGAA 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 50
Csp6I GTAC 1 cut(s) 130
CviJI RGCY 1 cut(s) 12
CviKI_1 RGCY 1 cut(s) 12
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 1 cut(s) 8
EcoT22I ATGCAT 1 cut(s) 81
FaiI YATR 3 cut(s) 53, 77, 111
FalI AAGNNNNNCTT 1 cut(s) 108
FspEI CC 6 cut(s) 31, 56, 74, 77, 83, 91
HincII GTYRAC 1 cut(s) 29
HindII GTYRAC 1 cut(s) 29
HinfI GANTC 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 29
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 2 cut(s) 79, 122
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 55
LpnPI CCDG 1 cut(s) 56
MaeII ACGT 1 cut(s) 55
MboII GAAGA 1 cut(s) 79
MluCI AATT 3 cut(s) 34, 65, 99
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 1 cut(s) 71
Mph1103I ATGCAT 1 cut(s) 81
MseI TTAA 2 cut(s) 98, 102
MspA1I CMGCKG 1 cut(s) 12
NsiI ATGCAT 1 cut(s) 81
NspV TTCGAA 1 cut(s) 38
PacI TTAATTAA 1 cut(s) 102
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PvuII CAGCTG 1 cut(s) 12
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SaqAI TTAA 2 cut(s) 98, 102
ScaI AGTACT 1 cut(s) 131
SchI GAGTC 1 cut(s) 34
SetI ASST 3 cut(s) 14, 58, 110
SfuI TTCGAA 1 cut(s) 38
SgeI CNNG 2 cut(s) 55, 103
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 3 cut(s) 34, 65, 99
SsiI CCGC 1 cut(s) 70
TaiI ACGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 38
TasI AATT 3 cut(s) 34, 65, 99
TatI WGTACW 1 cut(s) 129
Tru1I TTAA 2 cut(s) 98, 102
Tru9I TTAA 2 cut(s) 98, 102
TscAI CASTG 1 cut(s) 50
TspDTI ATGAA 2 cut(s) 73, 126
TspRI CASTG 1 cut(s) 50
XapI RAATTY 1 cut(s) 34
ZrmI AGTACT 1 cut(s) 131
Zsp2I ATGCAT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.