Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0020947

Physical Location & Seq

Genomic Coordinates Forward (+)

36895993 .. 36910287

Gene Structure 14295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG186600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGCCCGTGTTTGACCAGATCGAGCAATATTTGGTAGAAAATCGGGGTTTTACCCCTGGACGACCTTTGCGGATCATTGCTCGTAGTTTATATGTAGCCGCAGCAGGGTTTGTTGCAATGTGCATTCCATTTTTTGGAGGCTTATTAGGATTATTTGGAGGCTTGGTTATGATTCGAGAGCTTGAGCCATCAAGTCTAGCTGCAGGCACTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

71

Amino Acids

7.65

Weight (kDa)

6.07

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	1 - 57	2.5e-06	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0020947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39715
rosa_chinensis	RchiOBHm_Chr4g0410801 RchiOBHm_Chr5g0026791
rosa_samantha	Rh4DG186600 Rh7DG412600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	134
AciI	CCGC	2 cut(s)	70, 99
AclWI	GGATC	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	105, 134
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	2 cut(s)	181, 200
AluI	AGCT	2 cut(s)	181, 200
AlwI	GGATC	1 cut(s)	80
ApeKI	GCWGC	2 cut(s)	101, 200
BbvI	GCAGC	2 cut(s)	113, 187
BccI	CCATC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	57
BfaI	CTAG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	201
BisI	GCNGC	3 cut(s)	99, 102, 201
BlsI	GCNGC	3 cut(s)	100, 103, 202
Bme1390I	CCNGG	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 134
Bse3DI	GCAATG	2 cut(s)	75, 123
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	55
BseLI	CCNNNNNNNGG	2 cut(s)	105, 134
BseMI	GCAATG	2 cut(s)	75, 123
BseXI	GCAGC	2 cut(s)	113, 187
BslI	CCNNNNNNNGG	2 cut(s)	105, 134
BsmI	GAATGC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	18, 72
BspACI	CCGC	2 cut(s)	70, 99
BspMAI	CTGCAG	1 cut(s)	205
BspPI	GGATC	1 cut(s)	80
BsrDI	GCAATG	2 cut(s)	75, 123
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	18, 72
Bst2UI	CCWGG	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	213
BstKTI	GATC	2 cut(s)	21, 75
BstMBI	GATC	2 cut(s)	18, 72
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	113, 187
Cac8I	GCNNGC	1 cut(s)	205
CviJI	RGCY	6 cut(s)	98, 141, 162, 181, 187, 200
CviKI_1	RGCY	6 cut(s)	98, 141, 162, 181, 187, 200
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	20, 74
DpnII	GATC	2 cut(s)	18, 72
EcoRII	CCWGG	1 cut(s)	55
FaiI	YATR	3 cut(s)	91, 93, 170
Fnu4HI	GCNGC	3 cut(s)	99, 102, 201
Fsp4HI	GCNGC	3 cut(s)	99, 102, 201
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	3 cut(s)	99, 102, 201
HinfI	GANTC	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	176
HpyCH4V	TGCA	3 cut(s)	116, 123, 203
HpyF3I	CTNAG	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	18, 72
LpnPI	CCDG	5 cut(s)	29, 42, 69, 90, 189
Lsp1109I	GCAGC	2 cut(s)	113, 187
MaeI	CTAG	1 cut(s)	197
MalI	GATC	2 cut(s)	20, 74
MboI	GATC	2 cut(s)	18, 72
MnlI	CCTC	2 cut(s)	131, 152
MspR9I	CCNGG	1 cut(s)	57
Mva1269I	GAATGC	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	18, 72
PctI	GAATGC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	172
PflMI	CCANNNNNTGG	1 cut(s)	134
PkrI	GCNGC	3 cut(s)	100, 103, 202
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	205
SatI	GCNGC	3 cut(s)	99, 102, 201
Sau3AI	GATC	2 cut(s)	18, 72
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	3 cut(s)	67, 183, 202
SfcI	CTRYAG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SsiI	CCGC	2 cut(s)	70, 99
SspI	AATATT	1 cut(s)	29
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	55
TaqI	TCGA	2 cut(s)	21, 175
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	172
TseI	GCWGC	2 cut(s)	101, 200
Van91I	CCANNNNNTGG	1 cut(s)	134
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.