Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0020947

Physical Location & Seq

Genomic Coordinates Reverse (-)

57985825 .. 57990457

Gene Structure 4633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG412600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGATGCTCAGCTGTATTTCAAAGAGTCAACGAAATTCGAACCAGTGGAACATACGTTGCCTCCAATTCCGCAGTATGCATTTCATCTTCTTGATTTTAATTAAAAGGTATGAAAAATTACTCCAGACCGAAGCTGAAAAAGCATCAAGTATTATGTGGATCATCCTGAAGAAATCAACAAAGCTTCCAAAAACGAAGGCTCAACTATCCGGTTATGCCTCGATAGCATTTGTGGCATCAACAATTCAGGGTGTAAATCATCGTGAGAATGTGACCTATGGGATTCGGTCTTCGACACTTGCTGGTCAAATCTTTGATCTCTTGAATGGTATGCCTGTATTTGACCAGATTGAGCAATATCTAGTAGAAAATCGAGGTTTCACCCCTGGACTACCTTTGCGCATCATTGCTCGTAGTTTATATGTTGCTGCAGCAGGGTTTATTGCAATGTGCATTCCATTTTTTGGAGGCTTGTTAGGATTATTTGGAGGATTGGTATTCGCATCCACATCATTTTTTGTAAGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

176

Amino Acids

19.74

Weight (kDa)

9.86

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	111 - 173	2.2e-07	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39715
rosa_chinensis	RchiOBHm_Chr4g0410801 RchiOBHm_Chr5g0026791
rosa_samantha	Rh4DG186600 Rh7DG412600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	401
AccB7I	CCANNNNNTGG	1 cut(s)	464
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	464
AgsI	TTSAA	2 cut(s)	21, 325
AjnI	CCWGG	1 cut(s)	385
AluBI	AGCT	3 cut(s)	12, 134, 184
AluI	AGCT	3 cut(s)	12, 134, 184
AlwI	GGATC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	428, 431
ApoI	RAATTY	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	402
AsuHPI	GGTGA	1 cut(s)	373
AsuII	TTCGAA	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	415, 443
BciT130I	CCWGG	1 cut(s)	387
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	429
BisI	GCNGC	2 cut(s)	429, 432
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	2 cut(s)	430, 433
Bme1390I	CCNGG	1 cut(s)	387
BmrFI	CCNGG	1 cut(s)	387
BmsI	GCATC	4 cut(s)	152, 245, 411, 512
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	107
Bpu1102I	GCTNAGC	1 cut(s)	8
Bpu14I	TTCGAA	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	385
BsaWI	WCCGGW	1 cut(s)	209
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 480, 510
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	2 cut(s)	405, 453
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	385
BseGI	GGATG	2 cut(s)	162, 503
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMI	GCAATG	2 cut(s)	405, 453
BseMII	CTCAG	1 cut(s)	22
BseNI	ACTGG	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	415, 443
BsiSI	CCGG	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	453
Bsp119I	TTCGAA	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	159, 316
Bsp1720I	GCTNAGC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	21
BspMAI	CTGCAG	1 cut(s)	433
BspPI	GGATC	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	38
BsrDI	GCAATG	2 cut(s)	405, 453
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	2 cut(s)	159, 316
Bst2UI	CCWGG	1 cut(s)	387
BstBI	TTCGAA	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	8
BstF5I	GGATG	2 cut(s)	162, 503
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	2 cut(s)	162, 319
BstMBI	GATC	2 cut(s)	159, 316
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 224, 233
BstNI	CCWGG	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	385
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	415, 443
BstV2I	GAAGAC	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	162, 503
BtsIMutI	CAGTG	1 cut(s)	50
CfoI	GCGC	1 cut(s)	402
CviJI	RGCY	5 cut(s)	12, 134, 184, 200, 471
CviKI_1	RGCY	5 cut(s)	12, 134, 184, 200, 471
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	2 cut(s)	161, 318
DpnII	GATC	2 cut(s)	159, 316
Eco57I	CTGAAG	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	385
EcoT22I	ATGCAT	1 cut(s)	81
FaiI	YATR	9 cut(s)	53, 77, 111, 155, 216, 279, 332, 421, 423
Fnu4HI	GCNGC	2 cut(s)	429, 432
FokI	GGATG	2 cut(s)	149, 490
Fsp4HI	GCNGC	2 cut(s)	429, 432
FspBI	CTAG	1 cut(s)	362
FspI	TGCGCA	1 cut(s)	401
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	2 cut(s)	429, 432
GsuI	CTGGAG	1 cut(s)	107
HapII	CCGG	1 cut(s)	210
HhaI	GCGC	1 cut(s)	402
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	2 cut(s)	25, 283
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188III	TCNNGA	5 cut(s)	91, 124, 166, 263, 322
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	4 cut(s)	79, 431, 446, 453
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 224, 233
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	1 cut(s)	55
HspAI	GCGC	1 cut(s)	400
Kzo9I	GATC	2 cut(s)	159, 316
Lsp1109I	GCAGC	2 cut(s)	415, 443
LweI	GCATC	4 cut(s)	152, 245, 411, 512
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	161, 318
MboI	GATC	2 cut(s)	159, 316
MboII	GAAGA	3 cut(s)	79, 181, 282
MluCI	AATT	5 cut(s)	34, 65, 99, 116, 243
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	5 cut(s)	71, 229, 368, 461, 482
Mph1103I	ATGCAT	1 cut(s)	81
MseI	TTAA	2 cut(s)	98, 102
MspA1I	CMGCKG	1 cut(s)	12
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	387
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	3 cut(s)	140, 224, 233
NdeII	GATC	2 cut(s)	159, 316
NmuCI	GTSAC	1 cut(s)	271
NsbI	TGCGCA	1 cut(s)	401
NsiI	ATGCAT	1 cut(s)	81
NspV	TTCGAA	1 cut(s)	38
PacI	TTAATTAA	1 cut(s)	102
PctI	GAATGC	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	283
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	2 cut(s)	430, 433
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	385
PstI	CTGCAG	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	98, 102
SatI	GCNGC	2 cut(s)	429, 432
Sau3AI	GATC	2 cut(s)	159, 316
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	387
SetI	ASST	8 cut(s)	14, 58, 110, 136, 186, 278, 379, 397
SfaNI	GCATC	4 cut(s)	152, 245, 411, 512
SfcI	CTRYAG	1 cut(s)	429
SfuI	TTCGAA	1 cut(s)	38
Sse9I	AATT	5 cut(s)	34, 65, 99, 116, 243
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	385
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	4 cut(s)	38, 221, 293, 373
TaqII	GACCGA	2 cut(s)	143, 276
TasI	AATT	5 cut(s)	34, 65, 99, 116, 243
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	2 cut(s)	98, 102
Tru9I	TTAA	2 cut(s)	98, 102
TscAI	CASTG	1 cut(s)	50
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	428, 431
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	73, 126
TspRI	CASTG	1 cut(s)	50
Van91I	CCANNNNNTGG	1 cut(s)	464
XapI	RAATTY	1 cut(s)	34
XspI	CTAG	1 cut(s)	362
Zsp2I	ATGCAT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.