Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010735

Physical Location & Seq

Genomic Coordinates Forward (+)

16722239 .. 16725040

Gene Structure 2802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGGAGGAGGCAAAAACAGAAGTGGAGAAGAAAGTGTCTATACTTTTAAAGTTTATTCAAAACAAAAACAAGATCCCTAAGGTTACAAAGAAGGAGCTTGTTGGGATTGTTGAAGATCTCCATAAGCAGTGTCAGCTACTTTACTCTGTGTTTGATGATTTTGGGACTGATGGAAGAAAAGGAAAATTGGGTACTGCTTCTTCATCGAGGTCTAGTTCCGATTTGGATTACTATTCCTCAGAGGAAGTAGAGATCAGTGCTGATAATGTTAGTGATACATTGAGCTCGGATTACGATGTGATGCTCAGAAAGCTACAAGAGACAGAGCTAAGAAATGAAGATTTAGAGAGACAGGTGAGCAATCTGAAACAGGAAACGGTTTTTTTACGCGATCAAAACATGGAAGTCGCGGGAGATATTGAAGGTAAGAGAAACGAGGACAGGGAACATCTCAAGGGGTTGATGACGAAACTTGAGGCTGCATTGTTGTGTAACCAGAAAAGGGAGTTGGAAATGGAGCTGGTGAAGAAAACCAATCAAGTTTCAGAGACGCAAATGCGTTTGAAGCGTCTAGAGGAAGAAACAGAGAAACGAGCTAAGGCTGAGATGAAGATTGTTAAAGAAAAGGAAGCTTTGTGGAACAAAGTACAGAAACTTGAAGCGGGCGTTGATACTTTTCGGAAGAAGAGAAAGGAGTTTAATGAGGAGATGAAGAGTAAGATTACTGAGAATCAGAAGCTGCATACAAAAATTGCAGTGATTGATGAAATTGAAGACAAGAGTAAGAAACTTGAGTACCAAGTTAAGGAACAAGAAGATATCATTCAACGGCTATCAATGGAGATTAAAGATCAGAAGAAGCTTCTTAAGGAACAGAAAGATGCCATAGATAAGTTCTCAGAGGATCAGAAGCTGATGAAGCGTTGGTCATTTGGTTCGAAATTGAATACTAATCTTCTCGAGAAGAAAATGGAAGAGTTAGCGGAAGATTTTCGGATGAAAATGGAAGATCATATCCGGATACTTCACAGGAGGATCCATGTAGCCGAACAAATACACTTAGAGAGCAAGAGCAGCTATATCAAGACGCGAGACAACACACAAACAGAAGAAAACAGAGGAAACAGAGCAGTCTCTGAAACCCAATTCAAGAAAATCAAGGAAATGGTGGAACAAGGGCTTGCTGGACCAGAGATGGCGATAAAGAAGCTGGAAGAAAGCGGGGAATTAGGGAACCGAGTAACGAGATTAGCTAAAGAGATCGATTCAGCGAGAAAGTGGGTGAAGGAGAAGGACAACAATATGAAGCATGAGGTGGAAACTCTAGAAGCGAAGCTAGAATGTAGAGAAGCGCAAGAATCTCTGCTAAAGGAGAAGCTATCGAAGCTAGAGGCTAAGCTAGCGGAGGAAGGAACAGAAAAGCTGAGTCTATCAAAGGCTATGAGGAAAATTAAAAAGCTTGAGATTAATGTGAAGGAGAAAGAGTTTGAGTTGTTGAGTTTAGGAGAAGGGAAGAGAGAAGCCATAAGACAACTATGTGTTTTGGTTGATTATCAACGTTGTCGATATGATGATCTCAAAACTTCCATTTGTCACGTAGCTCTTCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

KIP1

Protein Analysis

537

Amino Acids

62.74

Weight (kDa)

7.56

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64320 AT1G64320 AT5G41780 AT5G41780 AT5G41780 AT5G41780
fragaria_vesca	FvH4_5g04071 FvH4_5g04071 FvH4_5g04071
malus_domestica	MD06G1102200.v1.1 MD14G1121400.v1.1
prunus_persica	Prupe.5G115200_v2.0.a1 Prupe.5G115200_v2.0.a1
pyrus_communis	pycom06g09700
rosa_chinensis	RchiOBHm_Chr7g0195441
rosa_roxburghii	Rroxscaffold_3G00260480
rosa_rugosa	Rorug07G0023200 Rorug07G0023200
rosa_samantha	Rh7BG152300
rosa_wichuraiana	Rw7G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	390, 410, 1090
AccIII	TCCGGA	1 cut(s)	1017
AciI	CCGC	5 cut(s)	410, 662, 983, 1221, 1403
AclI	AACGTT	1 cut(s)	1558
AclWI	GGATC	4 cut(s)	67, 912, 1030, 1043
AfaI	GTAC	3 cut(s)	193, 648, 797
AfiI	CCNNNNNNNGG	2 cut(s)	502, 805
AflII	CTTAAG	1 cut(s)	866
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	5 cut(s)	314, 343, 542, 1086, 1138
AlwI	GGATC	4 cut(s)	67, 912, 1030, 1043
AlwNI	CAGNNNCTG	3 cut(s)	739, 913, 1136
Ama87I	CYCGRG	1 cut(s)	959
Aor13HI	TCCGGA	1 cut(s)	1017
ApeKI	GCWGC	3 cut(s)	479, 739, 1074
AseI	ATTAAT	1 cut(s)	1467
Asp700I	GAANNNNTTC	1 cut(s)	990
AspLEI	GCGC	1 cut(s)	1354
AspS9I	GGNCC	1 cut(s)	1187
AsuHPI	GGTGA	3 cut(s)	367, 535, 1294
AsuII	TTCGAA	1 cut(s)	938
AsuNHI	GCTAGC	1 cut(s)	1399
AvaI	CYCGRG	1 cut(s)	959
AvaII	GGWCC	1 cut(s)	1187
AxyI	CCTNAGG	1 cut(s)	78
BaeI	ACNNNNGTAYC	2 cut(s)	779, 812
BamHI	GGATCC	1 cut(s)	1035
BanII	GRGCYC	1 cut(s)	287
BarI	GAAGNNNNNNTAC	2 cut(s)	184, 216
BbsI	GAAGAC	1 cut(s)	780
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	3 cut(s)	466, 726, 1086
BccI	CCATC	2 cut(s)	164, 1189
BceAI	ACGGC	1 cut(s)	845
BciVI	GTATCC	1 cut(s)	1014
BcoDI	GTCTC	5 cut(s)	314, 343, 542, 1086, 1138
BfaI	CTAG	6 cut(s)	213, 572, 1325, 1337, 1388, 1400
BfrI	CTTAAG	1 cut(s)	866
BfuI	GTATCC	1 cut(s)	1014
BglII	AGATCT	1 cut(s)	115
BisI	GCNGC	3 cut(s)	480, 740, 1075
BlpI	GCTNAGC	1 cut(s)	1395
BlsI	GCNGC	3 cut(s)	481, 741, 1076
Bme18I	GGWCC	1 cut(s)	1187
BmeT110I	CYCGRG	1 cut(s)	959
BmgT120I	GGNCC	1 cut(s)	1187
BmiI	GGNNCC	2 cut(s)	1037, 1235
BmsI	GCATC	2 cut(s)	291, 871
BmtI	GCTAGC	1 cut(s)	1403
BpiI	GAAGAC	1 cut(s)	780
Bpu10I	CCTNAGC	1 cut(s)	597
Bpu1102I	GCTNAGC	1 cut(s)	1395
Bpu14I	TTCGAA	1 cut(s)	938
BpuEI	CTTGAG	4 cut(s)	437, 494, 812, 1481
Bsa29I	ATCGAT	1 cut(s)	1263
BsaAI	YACGTR	1 cut(s)	1597
BsaWI	WCCGGW	1 cut(s)	1017
BsaXI	ACNNNNNCTCC	2 cut(s)	1469, 1499
Bsc4I	CCNNNNNNNGG	2 cut(s)	502, 805
Bse21I	CCTNAGG	1 cut(s)	78
BseAI	TCCGGA	1 cut(s)	1017
BseCI	ATCGAT	1 cut(s)	1263
BseGI	GGATG	1 cut(s)	1002
BseLI	CCNNNNNNNGG	2 cut(s)	502, 805
BseMII	CTCAG	6 cut(s)	252, 319, 594, 717, 912, 1415
BseRI	GAGGAG	2 cut(s)	20, 719
BseXI	GCAGC	3 cut(s)	466, 726, 1086
Bsh1236I	CGCG	3 cut(s)	390, 410, 1090
BshVI	ATCGAT	1 cut(s)	1263
BsiHKAI	GWGCWC	1 cut(s)	287
BsiHKCI	CYCGRG	1 cut(s)	959
BsiSI	CCGG	1 cut(s)	1018
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	502, 805
BsmAI	GTCTC	5 cut(s)	314, 343, 542, 1086, 1138
BsmBI	CGTCTC	1 cut(s)	542
BsmFI	GGGAC	1 cut(s)	178
BsoBI	CYCGRG	1 cut(s)	959
Bsp119I	TTCGAA	1 cut(s)	938
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp13I	TCCGGA	1 cut(s)	1017
Bsp1720I	GCTNAGC	1 cut(s)	1395
BspACI	CCGC	5 cut(s)	410, 662, 983, 1221, 1403
BspCNI	CTCAG	6 cut(s)	251, 318, 595, 718, 911, 1416
BspDI	ATCGAT	1 cut(s)	1263
BspEI	TCCGGA	1 cut(s)	1017
BspFNI	CGCG	3 cut(s)	390, 410, 1090
BspLI	GGNNCC	2 cut(s)	1037, 1235
BspOI	GCTAGC	1 cut(s)	1403
BspPI	GGATC	4 cut(s)	67, 912, 1030, 1043
BspQI	GCTCTTC	1 cut(s)	1608
BspT104I	TTCGAA	1 cut(s)	938
BspTI	CTTAAG	1 cut(s)	866
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	5 cut(s)	680, 707, 969, 1508, 1608
BstAFI	CTTAAG	1 cut(s)	866
BstBAI	YACGTR	1 cut(s)	1597
BstBI	TTCGAA	1 cut(s)	938
BstC8I	GCNNGC	3 cut(s)	664, 1182, 1401
BstF5I	GGATG	1 cut(s)	1002
BstFNI	CGCG	3 cut(s)	390, 410, 1090
BstHHI	GCGC	1 cut(s)	1354
BstMAI	GTCTC	5 cut(s)	314, 343, 542, 1086, 1138
BstMWI	GCNNNNNNNGC	8 cut(s)	133, 310, 565, 919, 1074, 1384, 1400, 1607
BstUI	CGCG	3 cut(s)	390, 410, 1090
BstV1I	GCAGC	3 cut(s)	466, 726, 1086
BstV2I	GAAGAC	1 cut(s)	780
BstX2I	RGATCY	3 cut(s)	72, 115, 1035
BstYI	RGATCY	3 cut(s)	72, 115, 1035
Bsu15I	ATCGAT	1 cut(s)	1263
Bsu36I	CCTNAGG	1 cut(s)	78
BsuI	GTATCC	1 cut(s)	1014
BsuTUI	ATCGAT	1 cut(s)	1263
BtsCI	GGATG	1 cut(s)	1002
BtsI	GCAGTG	2 cut(s)	134, 762
BtsIMutI	CAGTG	3 cut(s)	134, 262, 762
Cac8I	GCNNGC	3 cut(s)	664, 1182, 1401
CaiI	CAGNNNCTG	3 cut(s)	739, 913, 1136
CfoI	GCGC	1 cut(s)	1354
Cfr13I	GGNCC	1 cut(s)	1187
ClaI	ATCGAT	1 cut(s)	1263
CseI	GACGC	3 cut(s)	557, 559, 1096
Csp6I	GTAC	3 cut(s)	192, 647, 796
CviAII	CATG	3 cut(s)	400, 1040, 1310
CviQI	GTAC	3 cut(s)	192, 647, 796
DraI	TTTAAA	1 cut(s)	48
Eam1104I	CTCTTC	5 cut(s)	680, 707, 969, 1508, 1608
EarI	CTCTTC	5 cut(s)	680, 707, 969, 1508, 1608
Ecl136II	GAGCTC	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	287
Eco32I	GATATC	1 cut(s)	820
Eco47I	GGWCC	1 cut(s)	1187
Eco53kI	GAGCTC	1 cut(s)	285
Eco81I	CCTNAGG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	959
EcoICRI	GAGCTC	1 cut(s)	285
EcoRV	GATATC	1 cut(s)	820
EcoT38I	GRGCYC	1 cut(s)	287
Esp3I	CGTCTC	1 cut(s)	542
FaeI	CATG	3 cut(s)	403, 1043, 1313
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	3 cut(s)	399, 1039, 1309
FauI	CCCGC	3 cut(s)	403, 655, 1214
Fnu4HI	GCNGC	3 cut(s)	480, 740, 1075
FokI	GGATG	1 cut(s)	1009
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	3 cut(s)	480, 740, 1075
FspBI	CTAG	6 cut(s)	213, 572, 1325, 1337, 1388, 1400
GlaI	GCGC	1 cut(s)	1353
GluI	GCNGC	3 cut(s)	480, 740, 1075
HapII	CCGG	1 cut(s)	1018
HgaI	GACGC	3 cut(s)	557, 559, 1096
HhaI	GCGC	1 cut(s)	1354
Hin1II	CATG	3 cut(s)	403, 1043, 1313
Hin6I	GCGC	1 cut(s)	1352
HinP1I	GCGC	1 cut(s)	1352
HindIII	AAGCTT	3 cut(s)	630, 860, 1457
HinfI	GANTC	4 cut(s)	730, 1265, 1358, 1426
HpaII	CCGG	1 cut(s)	1018
HphI	GGTGA	3 cut(s)	367, 535, 1294
Hpy188III	TCNNGA	7 cut(s)	572, 959, 961, 1018, 1084, 1150, 1325
HpyAV	CCTTC	7 cut(s)	85, 416, 1279, 1285, 1403, 1468, 1502
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4IV	ACGT	2 cut(s)	1558, 1596
HpyCH4V	TGCA	3 cut(s)	482, 742, 755
HpyF10VI	GCNNNNNNNGC	8 cut(s)	133, 310, 565, 919, 1074, 1384, 1400, 1607
HpySE526I	ACGT	2 cut(s)	1558, 1596
Hsp92II	CATG	3 cut(s)	403, 1043, 1313
HspAI	GCGC	1 cut(s)	1352
Kpn2I	TCCGGA	1 cut(s)	1017
LguI	GCTCTTC	1 cut(s)	1608
LmnI	GCTCC	2 cut(s)	94, 517
Lsp1109I	GCAGC	3 cut(s)	466, 726, 1086
LweI	GCATC	2 cut(s)	291, 871
MaeI	CTAG	6 cut(s)	213, 572, 1325, 1337, 1388, 1400
MaeII	ACGT	2 cut(s)	1558, 1596
MaeIII	GTNAC	4 cut(s)	82, 491, 1240, 1592
MflI	RGATCY	3 cut(s)	72, 115, 1035
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	7 cut(s)	185, 750, 768, 941, 1145, 1226, 1449
MlyI	GAGTC	1 cut(s)	1435
MmeI	TCCRAC	1 cut(s)	489
MroI	TCCGGA	1 cut(s)	1017
MroXI	GAANNNNTTC	1 cut(s)	990
MseI	TTAA	8 cut(s)	47, 618, 699, 804, 846, 867, 1452, 1467
MslI	CAYNNNNRTG	1 cut(s)	487
MspCI	CTTAAG	1 cut(s)	866
MspI	CCGG	1 cut(s)	1018
MvnI	CGCG	3 cut(s)	390, 410, 1090
MwoI	GCNNNNNNNGC	8 cut(s)	133, 310, 565, 919, 1074, 1384, 1400, 1607
NheI	GCTAGC	1 cut(s)	1399
NlaIII	CATG	3 cut(s)	403, 1043, 1313
NlaIV	GGNNCC	2 cut(s)	1037, 1235
NmuCI	GTSAC	1 cut(s)	1592
NspV	TTCGAA	1 cut(s)	938
PaeR7I	CTCGAG	1 cut(s)	959
PciSI	GCTCTTC	1 cut(s)	1608
PdmI	GAANNNNTTC	1 cut(s)	990
PfeI	GAWTC	3 cut(s)	730, 1265, 1358
PkrI	GCNGC	3 cut(s)	481, 741, 1076
PleI	GAGTC	1 cut(s)	1434
PpsI	GAGTC	1 cut(s)	1434
Ppu21I	YACGTR	1 cut(s)	1597
PshBI	ATTAAT	1 cut(s)	1467
Psp124BI	GAGCTC	1 cut(s)	287
Psp1406I	AACGTT	1 cut(s)	1558
PspN4I	GGNNCC	2 cut(s)	1037, 1235
PspPI	GGNCC	1 cut(s)	1187
PstNI	CAGNNNCTG	3 cut(s)	739, 913, 1136
PsuI	RGATCY	3 cut(s)	72, 115, 1035
RsaI	GTAC	3 cut(s)	193, 648, 797
RsaNI	GTAC	3 cut(s)	192, 647, 796
RseI	CAYNNNNRTG	1 cut(s)	487
SacI	GAGCTC	1 cut(s)	287
SapI	GCTCTTC	1 cut(s)	1608
SaqAI	TTAA	8 cut(s)	47, 618, 699, 804, 846, 867, 1452, 1467
SatI	GCNGC	3 cut(s)	480, 740, 1075
Sau96I	GGNCC	1 cut(s)	1187
SchI	GAGTC	1 cut(s)	1435
SduI	GDGCHC	1 cut(s)	287
SfaNI	GCATC	2 cut(s)	291, 871
Sfr274I	CTCGAG	1 cut(s)	959
SfuI	TTCGAA	1 cut(s)	938
SinI	GGWCC	1 cut(s)	1187
SlaI	CTCGAG	1 cut(s)	959
SmiMI	CAYNNNNRTG	1 cut(s)	487
SmlI	CTYRAG	6 cut(s)	452, 473, 791, 866, 959, 1460
SmoI	CTYRAG	6 cut(s)	452, 473, 791, 866, 959, 1460
Sse9I	AATT	7 cut(s)	185, 750, 768, 941, 1145, 1226, 1449
SsiI	CCGC	5 cut(s)	410, 662, 983, 1221, 1403
SspMI	CTAG	6 cut(s)	213, 572, 1325, 1337, 1388, 1400
SstI	GAGCTC	1 cut(s)	287
TaaI	ACNGT	1 cut(s)	379
TaiI	ACGT	2 cut(s)	1561, 1599
TaqI	TCGA	6 cut(s)	206, 938, 960, 1263, 1382, 1564
TasI	AATT	7 cut(s)	185, 750, 768, 941, 1145, 1226, 1449
TatI	WGTACW	1 cut(s)	646
TfiI	GAWTC	3 cut(s)	730, 1265, 1358
Tru1I	TTAA	8 cut(s)	47, 618, 699, 804, 846, 867, 1452, 1467
Tru9I	TTAA	8 cut(s)	47, 618, 699, 804, 846, 867, 1452, 1467
TscAI	CASTG	3 cut(s)	134, 262, 762
TseFI	GTSAC	1 cut(s)	1592
TseI	GCWGC	3 cut(s)	479, 739, 1074
Tsp45I	GTSAC	1 cut(s)	1592
TspDTI	ATGAA	8 cut(s)	192, 351, 623, 725, 780, 932, 1013, 1319
TspRI	CASTG	3 cut(s)	134, 262, 762
Vha464I	CTTAAG	1 cut(s)	866
VpaK11BI	GGWCC	1 cut(s)	1187
VspI	ATTAAT	1 cut(s)	1467
XbaI	TCTAGA	2 cut(s)	571, 1324
XhoI	CTCGAG	1 cut(s)	959
XmnI	GAANNNNTTC	1 cut(s)	990
XspI	CTAG	6 cut(s)	213, 572, 1325, 1337, 1388, 1400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.