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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G43310 AT5G43310 AT5G43310 AT5G43310 AT5G43310 |
| fragaria_vesca | FvH4_4g03880 FvH4_4g03880 FvH4_4g03880 FvH4_4g03880 FvH4_4g03880 |
| malus_domestica | MD13G1215700.v1.1 MD16G1220700.v1.1 |
| prunus_persica | Prupe.1G041100_v2.0.a1 Prupe.1G041100_v2.0.a1 Prupe.1G041100_v2.0.a1 |
| pyrus_communis | pycom13g18900 pycom16g18510 |
| rosa_chinensis | RchiOBHm_Chr4g0393911 |
| rosa_laevigata | RLG00000009728 |
| rosa_multiflora | Rmu_sc0000928.1_g000035 |
| rosa_roxburghii | Rroxscaffold_5G00338980 |
| rosa_rugosa | Rorug03G0371100.1 |
| rosa_samantha | Rh4AG049400 Rh4BG045800 Rh4CG052900 Rh4DG046400 |
| rosa_wichuraiana | Rw4G003910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1942 |
| AccB1I | GGYRCC | 1 cut(s) | 1115 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1564, 1799 |
| AccI | GTMKAC | 3 cut(s) | 563, 590, 1208 |
| AccIII | TCCGGA | 1 cut(s) | 2869 |
| AciI | CCGC | 3 cut(s) | 209, 2317, 2342 |
| AclI | AACGTT | 1 cut(s) | 1546 |
| AcoI | YGGCCR | 3 cut(s) | 886, 1094, 1234 |
| AcsI | RAATTY | 5 cut(s) | 851, 1753, 2227, 2510, 3473 |
| AcuI | CTGAAG | 4 cut(s) | 213, 1839, 2897, 3623 |
| AcvI | CACGTG | 2 cut(s) | 755, 2210 |
| AdeI | CACNNNGTG | 1 cut(s) | 1628 |
| AfaI | GTAC | 7 cut(s) | 259, 411, 1600, 2536, 3310, 3317, 3393 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 1243, 1564, 1799, 2522, 2735, 2894 |
| AflIII | ACRYGT | 1 cut(s) | 277 |
| AhlI | ACTAGT | 1 cut(s) | 2744 |
| AjiI | CACGTC | 1 cut(s) | 1226 |
| AjnI | CCWGG | 7 cut(s) | 988, 1091, 1165, 1174, 2067, 2440, 2630 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 597, 629, 3337, 3369 |
| Alw21I | GWGCWC | 3 cut(s) | 688, 2209, 2752 |
| Alw26I | GTCTC | 7 cut(s) | 701, 1023, 2107, 3106, 3191, 3356, 3687 |
| Alw44I | GTGCAC | 1 cut(s) | 2748 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1403, 1484, 2948, 3644 |
| Ama87I | CYCGRG | 3 cut(s) | 1845, 1860, 3282 |
| Aor13HI | TCCGGA | 1 cut(s) | 2869 |
| AoxI | GGCC | 9 cut(s) | 485, 744, 886, 1094, 1234, 1503, 2153, 2768, 3414 |
| ApaLI | GTGCAC | 1 cut(s) | 2748 |
| ApoI | RAATTY | 5 cut(s) | 851, 1753, 2227, 2510, 3473 |
| AseI | ATTAAT | 1 cut(s) | 1368 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 386, 2482 |
| AspLEI | GCGC | 2 cut(s) | 2286, 2778 |
| AspS9I | GGNCC | 2 cut(s) | 2153, 2897 |
| AsuC2I | CCSGG | 4 cut(s) | 58, 1113, 2151, 2406 |
| AsuHPI | GGTGA | 8 cut(s) | 448, 1357, 1640, 1721, 2445, 2571, 2634, 2926 |
| AvaI | CYCGRG | 3 cut(s) | 1845, 1860, 3282 |
| AvaII | GGWCC | 1 cut(s) | 2897 |
| BaeGI | GKGCMC | 2 cut(s) | 1118, 2752 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1833, 1866 |
| BalI | TGGCCA | 3 cut(s) | 888, 1096, 1236 |
| BamHI | GGATCC | 1 cut(s) | 2042 |
| BanI | GGYRCC | 1 cut(s) | 1115 |
| BanII | GRGCYC | 2 cut(s) | 688, 3459 |
| BbrPI | CACGTG | 2 cut(s) | 755, 2210 |
| BbsI | GAAGAC | 6 cut(s) | 2176, 2280, 2459, 3029, 3486, 3707 |
| Bbv12I | GWGCWC | 3 cut(s) | 688, 2209, 2752 |
| BccI | CCATC | 6 cut(s) | 549, 829, 1201, 1558, 1928, 3028 |
| BceAI | ACGGC | 1 cut(s) | 2789 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 539, 573, 2739, 2773 |
| BciT130I | CCWGG | 7 cut(s) | 990, 1093, 1167, 1176, 2069, 2442, 2632 |
| BciVI | GTATCC | 1 cut(s) | 1654 |
| BcnI | CCSGG | 4 cut(s) | 58, 1113, 2151, 2406 |
| BcoDI | GTCTC | 7 cut(s) | 701, 1023, 2107, 3106, 3191, 3356, 3687 |
| BcuI | ACTAGT | 1 cut(s) | 2744 |
| BfmI | CTRYAG | 6 cut(s) | 105, 494, 1023, 1893, 2130, 3633 |
| BfuAI | ACCTGC | 1 cut(s) | 1942 |
| BfuI | GTATCC | 1 cut(s) | 1654 |
| BglII | AGATCT | 1 cut(s) | 1911 |
| BmcAI | AGTACT | 1 cut(s) | 411 |
| Bme18I | GGWCC | 1 cut(s) | 2897 |
| BmeT110I | CYCGRG | 3 cut(s) | 1845, 1860, 3282 |
| BmgBI | CACGTC | 1 cut(s) | 1226 |
| BmgT120I | GGNCC | 2 cut(s) | 2153, 2897 |
| BmiI | GGNNCC | 5 cut(s) | 823, 1117, 2044, 2148, 2154 |
| BmrI | ACTGGG | 1 cut(s) | 1500 |
| BmuI | ACTGGG | 1 cut(s) | 1500 |
| BpiI | GAAGAC | 6 cut(s) | 2176, 2280, 2459, 3029, 3486, 3707 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2131, 2163 |
| BpmI | CTGGAG | 5 cut(s) | 725, 2097, 2228, 2574, 2994 |
| BpuEI | CTTGAG | 3 cut(s) | 170, 672, 3603 |
| BpuMI | CCSGG | 4 cut(s) | 58, 1113, 2151, 2406 |
| BsaAI | YACGTR | 2 cut(s) | 755, 2210 |
| BsaBI | GATNNNNATC | 2 cut(s) | 540, 1416 |
| BsaJI | CCNNGG | 7 cut(s) | 989, 1091, 1165, 1793, 2150, 2771, 3417 |
| BsaWI | WCCGGW | 1 cut(s) | 2869 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3431, 3461 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 1243, 1564, 1799, 2522, 2735, 2894 |
| Bse1I | ACTGG | 6 cut(s) | 889, 889, 1097, 1124, 1495, 3011 |
| Bse3DI | GCAATG | 2 cut(s) | 3178, 3553 |
| Bse8I | GATNNNNATC | 2 cut(s) | 540, 1416 |
| BseAI | TCCGGA | 1 cut(s) | 2869 |
| BseBI | CCWGG | 7 cut(s) | 990, 1093, 1167, 1176, 2069, 2442, 2632 |
| BseDI | CCNNGG | 7 cut(s) | 989, 1091, 1165, 1793, 2150, 2771, 3417 |
| BseGI | GGATG | 3 cut(s) | 541, 844, 1828 |
| BseJI | GATNNNNATC | 2 cut(s) | 540, 1416 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 1243, 1564, 1799, 2522, 2735, 2894 |
| BseMI | GCAATG | 2 cut(s) | 3178, 3553 |
| BseNI | ACTGG | 6 cut(s) | 889, 889, 1097, 1124, 1495, 3011 |
| BseRI | GAGGAG | 2 cut(s) | 521, 1452 |
| BseSI | GKGCMC | 2 cut(s) | 1118, 2752 |
| BseYI | CCCAGC | 1 cut(s) | 2015 |
| BsgI | GTGCAG | 2 cut(s) | 492, 2349 |
| BshFI | GGCC | 9 cut(s) | 487, 746, 888, 1096, 1236, 1505, 2155, 2770, 3416 |
| BshNI | GGYRCC | 1 cut(s) | 1115 |
| BsiHKAI | GWGCWC | 3 cut(s) | 688, 2209, 2752 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1845, 1860, 3282 |
| BsiSI | CCGG | 6 cut(s) | 58, 263, 1112, 2150, 2406, 2870 |
| BslFI | GGGAC | 2 cut(s) | 387, 1006 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 1243, 1564, 1799, 2522, 2735, 2894 |
| BsmAI | GTCTC | 7 cut(s) | 701, 1023, 2107, 3106, 3191, 3356, 3687 |
| BsmFI | GGGAC | 2 cut(s) | 387, 1006 |
| BsnI | GGCC | 9 cut(s) | 487, 746, 888, 1096, 1236, 1505, 2155, 2770, 3416 |
| BsoBI | CYCGRG | 3 cut(s) | 1845, 1860, 3282 |
| Bsp1286I | GDGCHC | 5 cut(s) | 688, 1118, 2209, 2752, 3459 |
| Bsp13I | TCCGGA | 1 cut(s) | 2869 |
| Bsp1407I | TGTACA | 1 cut(s) | 3308 |
| BspACI | CCGC | 3 cut(s) | 209, 2317, 2342 |
| BspANI | GGCC | 9 cut(s) | 487, 746, 888, 1096, 1236, 1505, 2155, 2770, 3416 |
| BspEI | TCCGGA | 1 cut(s) | 2869 |
| BspHI | TCATGA | 3 cut(s) | 1420, 1969, 3556 |
| BspLI | GGNNCC | 5 cut(s) | 823, 1117, 2044, 2148, 2154 |
| BspMAI | CTGCAG | 1 cut(s) | 2134 |
| BspMI | ACCTGC | 1 cut(s) | 1942 |
| BspT107I | GGYRCC | 1 cut(s) | 1115 |
| BsrDI | GCAATG | 2 cut(s) | 3178, 3553 |
| BsrGI | TGTACA | 1 cut(s) | 3308 |
| BsrI | ACTGG | 6 cut(s) | 889, 889, 1097, 1124, 1495, 3011 |
| BssECI | CCNNGG | 7 cut(s) | 989, 1091, 1165, 1793, 2150, 2771, 3417 |
| BssNAI | GTATAC | 1 cut(s) | 591 |
| BssT1I | CCWWGG | 1 cut(s) | 1793 |
| Bst1107I | GTATAC | 1 cut(s) | 591 |
| Bst2UI | CCWGG | 7 cut(s) | 990, 1093, 1167, 1176, 2069, 2442, 2632 |
| Bst6I | CTCTTC | 6 cut(s) | 1583, 1921, 2262, 2463, 2871, 3479 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 470, 977, 1153, 3644 |
| BstAUI | TGTACA | 1 cut(s) | 3308 |
| BstBAI | YACGTR | 2 cut(s) | 755, 2210 |
| BstC8I | GCNNGC | 5 cut(s) | 485, 552, 1154, 1503, 2364 |
| BstDSI | CCRYGG | 1 cut(s) | 2771 |
| BstF5I | GGATG | 3 cut(s) | 541, 844, 1828 |
| BstHHI | GCGC | 2 cut(s) | 2286, 2778 |
| BstMAI | GTCTC | 7 cut(s) | 701, 1023, 2107, 3106, 3191, 3356, 3687 |
| BstNI | CCWGG | 7 cut(s) | 990, 1093, 1167, 1176, 2069, 2442, 2632 |
| BstNSI | RCATGY | 2 cut(s) | 846, 1156 |
| BstSFI | CTRYAG | 6 cut(s) | 105, 494, 1023, 1893, 2130, 3633 |
| BstSLI | GKGCMC | 2 cut(s) | 1118, 2752 |
| BstV2I | GAAGAC | 6 cut(s) | 2176, 2280, 2459, 3029, 3486, 3707 |
| BstX2I | RGATCY | 5 cut(s) | 1706, 1911, 2042, 2101, 3301 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2075 |
| BstYI | RGATCY | 5 cut(s) | 1706, 1911, 2042, 2101, 3301 |
| BstZ17I | GTATAC | 1 cut(s) | 591 |
| BsuI | GTATCC | 1 cut(s) | 1654 |
| BsuRI | GGCC | 9 cut(s) | 487, 746, 888, 1096, 1236, 1505, 2155, 2770, 3416 |
| BtgI | CCRYGG | 1 cut(s) | 2771 |
| BtrI | CACGTC | 1 cut(s) | 1226 |
| BtsCI | GGATG | 3 cut(s) | 541, 844, 1828 |
| BtsIMutI | CAGTG | 6 cut(s) | 896, 1488, 2769, 3018, 3318, 3599 |
| BveI | ACCTGC | 1 cut(s) | 1942 |
| Cac8I | GCNNGC | 5 cut(s) | 485, 552, 1154, 1503, 2364 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1403, 1484, 2948, 3644 |
| CciI | TCATGA | 3 cut(s) | 1420, 1969, 3556 |
| CfoI | GCGC | 2 cut(s) | 2286, 2778 |
| Cfr13I | GGNCC | 2 cut(s) | 2153, 2897 |
| CseI | GACGC | 3 cut(s) | 2813, 2934, 3435 |
| CsiI | ACCWGGT | 2 cut(s) | 2440, 2630 |
| Csp6I | GTAC | 7 cut(s) | 258, 410, 1599, 2535, 3309, 3316, 3392 |
| CviQI | GTAC | 7 cut(s) | 258, 410, 1599, 2535, 3309, 3316, 3392 |
| DraI | TTTAAA | 1 cut(s) | 138 |
| DraIII | CACNNNGTG | 1 cut(s) | 1628 |
| EaeI | YGGCCR | 3 cut(s) | 886, 1094, 1234 |
| Eam1104I | CTCTTC | 6 cut(s) | 1583, 1921, 2262, 2463, 2871, 3479 |
| EarI | CTCTTC | 6 cut(s) | 1583, 1921, 2262, 2463, 2871, 3479 |
| Ecl136II | GAGCTC | 1 cut(s) | 686 |
| Eco130I | CCWWGG | 1 cut(s) | 1793 |
| Eco147I | AGGCCT | 3 cut(s) | 487, 1505, 3416 |
| Eco24I | GRGCYC | 2 cut(s) | 688, 3459 |
| Eco32I | GATATC | 1 cut(s) | 2577 |
| Eco47I | GGWCC | 1 cut(s) | 2897 |
| Eco53kI | GAGCTC | 1 cut(s) | 686 |
| Eco57I | CTGAAG | 4 cut(s) | 213, 1839, 2897, 3623 |
| Eco72I | CACGTG | 2 cut(s) | 755, 2210 |
| Eco88I | CYCGRG | 3 cut(s) | 1845, 1860, 3282 |
| EcoICRI | GAGCTC | 1 cut(s) | 686 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2897 |
| EcoRI | GAATTC | 1 cut(s) | 1753 |
| EcoRII | CCWGG | 7 cut(s) | 988, 1091, 1165, 1174, 2067, 2440, 2630 |
| EcoRV | GATATC | 1 cut(s) | 2577 |
| EcoT14I | CCWWGG | 1 cut(s) | 1793 |
| EcoT22I | ATGCAT | 2 cut(s) | 844, 3535 |
| EcoT38I | GRGCYC | 2 cut(s) | 688, 3459 |
| ErhI | CCWWGG | 1 cut(s) | 1793 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2467, 2499, 3577, 3609 |
| FaqI | GGGAC | 2 cut(s) | 387, 1006 |
| FauNDI | CATATG | 3 cut(s) | 1560, 3265, 3277 |
| FblI | GTMKAC | 3 cut(s) | 563, 590, 1208 |
| FokI | GGATG | 3 cut(s) | 528, 851, 1835 |
| FriOI | GRGCYC | 2 cut(s) | 688, 3459 |
| GlaI | GCGC | 2 cut(s) | 2285, 2777 |
| GsaI | CCCAGC | 1 cut(s) | 2019 |
| GsuI | CTGGAG | 5 cut(s) | 725, 2097, 2228, 2574, 2994 |
| HaeIII | GGCC | 9 cut(s) | 487, 746, 888, 1096, 1236, 1505, 2155, 2770, 3416 |
| HapII | CCGG | 6 cut(s) | 58, 263, 1112, 2150, 2406, 2870 |
| HgaI | GACGC | 3 cut(s) | 2813, 2934, 3435 |
| HhaI | GCGC | 2 cut(s) | 2286, 2778 |
| Hin6I | GCGC | 2 cut(s) | 2284, 2776 |
| HinP1I | GCGC | 2 cut(s) | 2284, 2776 |
| HincII | GTYRAC | 3 cut(s) | 2550, 2628, 2839 |
| HindII | GTYRAC | 3 cut(s) | 2550, 2628, 2839 |
| HindIII | AAGCTT | 3 cut(s) | 2049, 3346, 3591 |
| HpaI | GTTAAC | 2 cut(s) | 2628, 2839 |
| HpaII | CCGG | 6 cut(s) | 58, 263, 1112, 2150, 2406, 2870 |
| HphI | GGTGA | 8 cut(s) | 448, 1357, 1640, 1721, 2445, 2571, 2634, 2926 |
| HpyCH4IV | ACGT | 8 cut(s) | 277, 754, 829, 1225, 1546, 1633, 2209, 2464 |
| HpySE526I | ACGT | 8 cut(s) | 277, 754, 829, 1225, 1546, 1633, 2209, 2464 |
| HspAI | GCGC | 2 cut(s) | 2284, 2776 |
| Kpn2I | TCCGGA | 1 cut(s) | 2869 |
| KspAI | GTTAAC | 2 cut(s) | 2628, 2839 |
| LmnI | GCTCC | 5 cut(s) | 821, 1178, 2152, 2812, 3277 |
| MabI | ACCWGGT | 2 cut(s) | 2440, 2630 |
| MaeII | ACGT | 8 cut(s) | 277, 754, 829, 1225, 1546, 1633, 2209, 2464 |
| MfeI | CAATTG | 2 cut(s) | 155, 231 |
| MflI | RGATCY | 5 cut(s) | 1706, 1911, 2042, 2101, 3301 |
| MhlI | GDGCHC | 5 cut(s) | 688, 1118, 2209, 2752, 3459 |
| MlsI | TGGCCA | 3 cut(s) | 888, 1096, 1236 |
| MluNI | TGGCCA | 3 cut(s) | 888, 1096, 1236 |
| Mox20I | TGGCCA | 3 cut(s) | 888, 1096, 1236 |
| Mph1103I | ATGCAT | 2 cut(s) | 844, 3535 |
| MroI | TCCGGA | 1 cut(s) | 2869 |
| MroXI | GAANNNNTTC | 2 cut(s) | 386, 2482 |
| MscI | TGGCCA | 3 cut(s) | 888, 1096, 1236 |
| MseI | TTAA | 7 cut(s) | 137, 414, 648, 1368, 2627, 2838, 3540 |
| Msp20I | TGGCCA | 3 cut(s) | 888, 1096, 1236 |
| MspA1I | CMGCKG | 7 cut(s) | 767, 1667, 2015, 2075, 2342, 3566, 3644 |
| MspI | CCGG | 6 cut(s) | 58, 263, 1112, 2150, 2406, 2870 |
| MunI | CAATTG | 2 cut(s) | 155, 231 |
| MvaI | CCWGG | 7 cut(s) | 990, 1093, 1167, 1176, 2069, 2442, 2632 |
| NciI | CCSGG | 4 cut(s) | 58, 1113, 2151, 2406 |
| NdeI | CATATG | 3 cut(s) | 1560, 3265, 3277 |
| NlaIV | GGNNCC | 5 cut(s) | 823, 1117, 2044, 2148, 2154 |
| NmuCI | GTSAC | 6 cut(s) | 200, 1687, 1712, 2352, 2451, 3206 |
| NsiI | ATGCAT | 2 cut(s) | 844, 3535 |
| NspI | RCATGY | 2 cut(s) | 846, 1156 |
| PaeI | GCATGC | 1 cut(s) | 1156 |
| PagI | TCATGA | 3 cut(s) | 1420, 1969, 3556 |
| PceI | AGGCCT | 3 cut(s) | 487, 1505, 3416 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2579 |
| PdmI | GAANNNNTTC | 2 cut(s) | 386, 2482 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1564, 1799 |
| PfoI | TCCNGGA | 1 cut(s) | 1174 |
| PmaCI | CACGTG | 2 cut(s) | 755, 2210 |
| PmlI | CACGTG | 2 cut(s) | 755, 2210 |
| Ppu21I | YACGTR | 2 cut(s) | 755, 2210 |
| PpuMI | RGGWCCY | 1 cut(s) | 2897 |
| PshBI | ATTAAT | 1 cut(s) | 1368 |
| Psp124BI | GAGCTC | 1 cut(s) | 688 |
| Psp1406I | AACGTT | 1 cut(s) | 1546 |
| Psp5II | RGGWCCY | 1 cut(s) | 2897 |
| Psp6I | CCWGG | 7 cut(s) | 988, 1091, 1165, 1174, 2067, 2440, 2630 |
| PspCI | CACGTG | 2 cut(s) | 755, 2210 |
| PspFI | CCCAGC | 1 cut(s) | 2015 |
| PspGI | CCWGG | 7 cut(s) | 988, 1091, 1165, 1174, 2067, 2440, 2630 |
| PspN4I | GGNNCC | 5 cut(s) | 823, 1117, 2044, 2148, 2154 |
| PspPI | GGNCC | 2 cut(s) | 2153, 2897 |
| PspPPI | RGGWCCY | 1 cut(s) | 2897 |
| PstI | CTGCAG | 1 cut(s) | 2134 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1403, 1484, 2948, 3644 |
| PsuI | RGATCY | 5 cut(s) | 1706, 1911, 2042, 2101, 3301 |
| PvuII | CAGCTG | 6 cut(s) | 767, 1667, 2015, 2075, 3566, 3644 |
| RsaI | GTAC | 7 cut(s) | 259, 411, 1600, 2536, 3310, 3317, 3393 |
| RsaNI | GTAC | 7 cut(s) | 258, 410, 1599, 2535, 3309, 3316, 3392 |
| SacI | GAGCTC | 1 cut(s) | 688 |
| SaqAI | TTAA | 7 cut(s) | 137, 414, 648, 1368, 2627, 2838, 3540 |
| Sau96I | GGNCC | 2 cut(s) | 2153, 2897 |
| ScaI | AGTACT | 1 cut(s) | 411 |
| SduI | GDGCHC | 5 cut(s) | 688, 1118, 2209, 2752, 3459 |
| SexAI | ACCWGGT | 2 cut(s) | 2440, 2630 |
| SfcI | CTRYAG | 6 cut(s) | 105, 494, 1023, 1893, 2130, 3633 |
| SinI | GGWCC | 1 cut(s) | 2897 |
| SmlI | CTYRAG | 3 cut(s) | 185, 687, 3618 |
| SmoI | CTYRAG | 3 cut(s) | 185, 687, 3618 |
| SpeI | ACTAGT | 1 cut(s) | 2744 |
| SphI | GCATGC | 1 cut(s) | 1156 |
| SseBI | AGGCCT | 3 cut(s) | 487, 1505, 3416 |
| SsiI | CCGC | 3 cut(s) | 209, 2317, 2342 |
| SstI | GAGCTC | 1 cut(s) | 688 |
| StuI | AGGCCT | 3 cut(s) | 487, 1505, 3416 |
| StyI | CCWWGG | 1 cut(s) | 1793 |
| TaiI | ACGT | 8 cut(s) | 280, 757, 832, 1228, 1549, 1636, 2212, 2467 |
| TaqII | GACCGA | 2 cut(s) | 549, 2188 |
| TatI | WGTACW | 3 cut(s) | 409, 3308, 3315 |
| TauI | GCSGC | 1 cut(s) | 212 |
| Tru1I | TTAA | 7 cut(s) | 137, 414, 648, 1368, 2627, 2838, 3540 |
| Tru9I | TTAA | 7 cut(s) | 137, 414, 648, 1368, 2627, 2838, 3540 |
| TscAI | CASTG | 6 cut(s) | 896, 1495, 2769, 3018, 3318, 3606 |
| TseFI | GTSAC | 6 cut(s) | 200, 1687, 1712, 2352, 2451, 3206 |
| Tsp45I | GTSAC | 6 cut(s) | 200, 1687, 1712, 2352, 2451, 3206 |
| TspGWI | ACGGA | 3 cut(s) | 727, 1194, 2176 |
| TspRI | CASTG | 6 cut(s) | 896, 1495, 2769, 3018, 3318, 3606 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1564, 1799 |
| VneI | GTGCAC | 1 cut(s) | 2748 |
| VpaK11BI | GGWCC | 1 cut(s) | 2897 |
| VspI | ATTAAT | 1 cut(s) | 1368 |
| XapI | RAATTY | 5 cut(s) | 851, 1753, 2227, 2510, 3473 |
| XbaI | TCTAGA | 3 cut(s) | 1220, 2411, 2680 |
| XceI | RCATGY | 2 cut(s) | 846, 1156 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1739 |
| XmiI | GTMKAC | 3 cut(s) | 563, 590, 1208 |
| XmnI | GAANNNNTTC | 2 cut(s) | 386, 2482 |
| ZrmI | AGTACT | 1 cut(s) | 411 |
| Zsp2I | ATGCAT | 2 cut(s) | 844, 3535 |