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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G43310 AT5G43310 AT5G43310 AT5G43310 AT5G43310 |
| fragaria_vesca | FvH4_4g03880 FvH4_4g03880 FvH4_4g03880 FvH4_4g03880 FvH4_4g03880 |
| malus_domestica | MD13G1215700.v1.1 MD16G1220700.v1.1 |
| prunus_persica | Prupe.1G041100_v2.0.a1 Prupe.1G041100_v2.0.a1 Prupe.1G041100_v2.0.a1 |
| pyrus_communis | pycom13g18900 pycom16g18510 |
| rosa_chinensis | RchiOBHm_Chr4g0393911 |
| rosa_laevigata | RLG00000009728 |
| rosa_multiflora | Rmu_sc0000928.1_g000035 |
| rosa_roxburghii | Rroxscaffold_5G00338980 |
| rosa_rugosa | Rorug03G0371100.1 |
| rosa_samantha | Rh4AG049400 Rh4BG045800 Rh4CG052900 Rh4DG046400 |
| rosa_wichuraiana | Rw4G003910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 147 |
| Acc36I | ACCTGC | 1 cut(s) | 581 |
| AccB1I | GGYRCC | 1 cut(s) | 613 |
| AccBSI | CCGCTC | 1 cut(s) | 1173 |
| AccII | CGCG | 1 cut(s) | 1443 |
| AccIII | TCCGGA | 1 cut(s) | 1117 |
| AciI | CCGC | 4 cut(s) | 588, 1171, 1533, 1603 |
| AclWI | GGATC | 4 cut(s) | 1031, 1109, 1418, 1511 |
| AcoI | YGGCCR | 2 cut(s) | 159, 880 |
| AcsI | RAATTY | 5 cut(s) | 499, 758, 1408, 1551, 1583 |
| AcuI | CTGAAG | 3 cut(s) | 489, 756, 1230 |
| AcvI | CACGTG | 1 cut(s) | 578 |
| AfaI | GTAC | 3 cut(s) | 229, 284, 902 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 197, 965 |
| AjnI | CCWGG | 8 cut(s) | 56, 525, 877, 908, 928, 991, 1312, 1506 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 858, 890 |
| AluBI | AGCT | 5 cut(s) | 104, 409, 514, 731, 1262 |
| AluI | AGCT | 5 cut(s) | 104, 409, 514, 731, 1262 |
| Alw21I | GWGCWC | 2 cut(s) | 260, 1332 |
| Alw26I | GTCTC | 1 cut(s) | 524 |
| Alw44I | GTGCAC | 1 cut(s) | 1328 |
| AlwI | GGATC | 4 cut(s) | 1031, 1109, 1418, 1511 |
| Aor13HI | TCCGGA | 1 cut(s) | 1117 |
| AoxI | GGCC | 3 cut(s) | 159, 880, 911 |
| ApaLI | GTGCAC | 1 cut(s) | 1328 |
| ApeKI | GCWGC | 2 cut(s) | 547, 731 |
| ApoI | RAATTY | 5 cut(s) | 499, 758, 1408, 1551, 1583 |
| AseI | ATTAAT | 1 cut(s) | 1578 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 873, 1362 |
| AspLEI | GCGC | 1 cut(s) | 148 |
| AspS9I | GGNCC | 2 cut(s) | 54, 479 |
| AsuNHI | GCTAGC | 1 cut(s) | 1166 |
| AvaII | GGWCC | 2 cut(s) | 54, 479 |
| BaeGI | GKGCMC | 1 cut(s) | 1332 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 929, 962 |
| BalI | TGGCCA | 2 cut(s) | 161, 882 |
| BanI | GGYRCC | 1 cut(s) | 613 |
| BbrPI | CACGTG | 1 cut(s) | 578 |
| BbsI | GAAGAC | 2 cut(s) | 146, 1440 |
| Bbv12I | GWGCWC | 2 cut(s) | 260, 1332 |
| BbvI | GCAGC | 2 cut(s) | 534, 718 |
| BccI | CCATC | 3 cut(s) | 151, 340, 900 |
| BciT130I | CCWGG | 8 cut(s) | 58, 527, 879, 910, 930, 993, 1314, 1508 |
| BciVI | GTATCC | 1 cut(s) | 957 |
| BclI | TGATCA | 2 cut(s) | 604, 1624 |
| BcoDI | GTCTC | 1 cut(s) | 524 |
| BfaI | CTAG | 4 cut(s) | 416, 1041, 1167, 1263 |
| BfmI | CTRYAG | 3 cut(s) | 384, 548, 819 |
| BfuAI | ACCTGC | 1 cut(s) | 581 |
| BfuI | GTATCC | 1 cut(s) | 957 |
| BglII | AGATCT | 1 cut(s) | 267 |
| BisI | GCNGC | 4 cut(s) | 548, 588, 732, 1171 |
| BlsI | GCNGC | 4 cut(s) | 549, 589, 733, 1172 |
| Bme1390I | CCNGG | 8 cut(s) | 58, 527, 879, 910, 930, 993, 1314, 1508 |
| Bme18I | GGWCC | 2 cut(s) | 54, 479 |
| BmgT120I | GGNCC | 2 cut(s) | 54, 479 |
| BmiI | GGNNCC | 2 cut(s) | 481, 615 |
| BmrFI | CCNGG | 8 cut(s) | 58, 527, 879, 910, 930, 993, 1314, 1508 |
| BmrI | ACTGGG | 2 cut(s) | 24, 717 |
| BmsI | GCATC | 6 cut(s) | 196, 409, 448, 652, 785, 853 |
| BmtI | GCTAGC | 1 cut(s) | 1170 |
| BmuI | ACTGGG | 2 cut(s) | 24, 717 |
| BpiI | GAAGAC | 2 cut(s) | 146, 1440 |
| BpmI | CTGGAG | 2 cut(s) | 548, 912 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1174 |
| BpuEI | CTTGAG | 1 cut(s) | 206 |
| Bsa29I | ATCGAT | 1 cut(s) | 1651 |
| BsaAI | YACGTR | 1 cut(s) | 578 |
| BsaJI | CCNNGG | 8 cut(s) | 162, 837, 908, 991, 1080, 1313, 1453, 1507 |
| BsaWI | WCCGGW | 2 cut(s) | 107, 1117 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 197, 965 |
| Bse1I | ACTGG | 5 cut(s) | 19, 712, 883, 941, 1397 |
| Bse3DI | GCAATG | 1 cut(s) | 747 |
| BseAI | TCCGGA | 1 cut(s) | 1117 |
| BseBI | CCWGG | 8 cut(s) | 58, 527, 879, 910, 930, 993, 1314, 1508 |
| BseCI | ATCGAT | 1 cut(s) | 1651 |
| BseDI | CCNNGG | 8 cut(s) | 162, 837, 908, 991, 1080, 1313, 1453, 1507 |
| BseGI | GGATG | 2 cut(s) | 667, 1519 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 197, 965 |
| BseMI | GCAATG | 1 cut(s) | 747 |
| BseMII | CTCAG | 3 cut(s) | 288, 1188, 1432 |
| BseNI | ACTGG | 5 cut(s) | 19, 712, 883, 941, 1397 |
| BseSI | GKGCMC | 1 cut(s) | 1332 |
| BseXI | GCAGC | 2 cut(s) | 534, 718 |
| BsgI | GTGCAG | 1 cut(s) | 471 |
| Bsh1236I | CGCG | 1 cut(s) | 1443 |
| BshFI | GGCC | 3 cut(s) | 161, 882, 913 |
| BshNI | GGYRCC | 1 cut(s) | 613 |
| BshVI | ATCGAT | 1 cut(s) | 1651 |
| BsiHKAI | GWGCWC | 2 cut(s) | 260, 1332 |
| BsiSI | CCGG | 3 cut(s) | 108, 198, 1118 |
| BslFI | GGGAC | 2 cut(s) | 115, 363 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 197, 965 |
| BsmAI | GTCTC | 1 cut(s) | 524 |
| BsmFI | GGGAC | 2 cut(s) | 115, 363 |
| BsmI | GAATGC | 3 cut(s) | 641, 778, 1308 |
| BsnI | GGCC | 3 cut(s) | 161, 882, 913 |
| Bsp1286I | GDGCHC | 2 cut(s) | 260, 1332 |
| Bsp13I | TCCGGA | 1 cut(s) | 1117 |
| Bsp1407I | TGTACA | 1 cut(s) | 282 |
| Bsp19I | CCATGG | 2 cut(s) | 837, 1080 |
| BspACI | CCGC | 4 cut(s) | 588, 1171, 1533, 1603 |
| BspANI | GGCC | 3 cut(s) | 161, 882, 913 |
| BspCNI | CTCAG | 3 cut(s) | 289, 1187, 1431 |
| BspDI | ATCGAT | 1 cut(s) | 1651 |
| BspEI | TCCGGA | 1 cut(s) | 1117 |
| BspFNI | CGCG | 1 cut(s) | 1443 |
| BspLI | GGNNCC | 2 cut(s) | 481, 615 |
| BspMAI | CTGCAG | 2 cut(s) | 552, 823 |
| BspMI | ACCTGC | 1 cut(s) | 581 |
| BspOI | GCTAGC | 1 cut(s) | 1170 |
| BspPI | GGATC | 4 cut(s) | 1031, 1109, 1418, 1511 |
| BspT107I | GGYRCC | 1 cut(s) | 613 |
| BsrBI | CCGCTC | 1 cut(s) | 1173 |
| BsrDI | GCAATG | 1 cut(s) | 747 |
| BsrGI | TGTACA | 1 cut(s) | 282 |
| BsrI | ACTGG | 5 cut(s) | 19, 712, 883, 941, 1397 |
| BssECI | CCNNGG | 8 cut(s) | 162, 837, 908, 991, 1080, 1313, 1453, 1507 |
| BssT1I | CCWWGG | 4 cut(s) | 162, 837, 1080, 1453 |
| Bst2UI | CCWGG | 8 cut(s) | 58, 527, 879, 910, 930, 993, 1314, 1508 |
| Bst4CI | ACNGT | 4 cut(s) | 232, 687, 1030, 1363 |
| Bst6I | CTCTTC | 3 cut(s) | 309, 423, 1249 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 970 |
| BstAUI | TGTACA | 1 cut(s) | 282 |
| BstBAI | YACGTR | 1 cut(s) | 578 |
| BstC8I | GCNNGC | 4 cut(s) | 971, 1168, 1398, 1607 |
| BstDEI | CTNAG | 3 cut(s) | 297, 1174, 1418 |
| BstDSI | CCRYGG | 2 cut(s) | 837, 1080 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 963 |
| BstF5I | GGATG | 2 cut(s) | 667, 1519 |
| BstFNI | CGCG | 1 cut(s) | 1443 |
| BstHHI | GCGC | 1 cut(s) | 148 |
| BstMAI | GTCTC | 1 cut(s) | 524 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 255, 556, 587, 737, 773, 970 |
| BstNI | CCWGG | 8 cut(s) | 58, 527, 879, 910, 930, 993, 1314, 1508 |
| BstNSI | RCATGY | 3 cut(s) | 973, 1462, 1609 |
| BstSCI | CCNGG | 8 cut(s) | 56, 525, 877, 908, 928, 991, 1312, 1506 |
| BstSFI | CTRYAG | 3 cut(s) | 384, 548, 819 |
| BstSLI | GKGCMC | 1 cut(s) | 1332 |
| BstUI | CGCG | 1 cut(s) | 1443 |
| BstV1I | GCAGC | 2 cut(s) | 534, 718 |
| BstV2I | GAAGAC | 2 cut(s) | 146, 1440 |
| BstX2I | RGATCY | 3 cut(s) | 267, 1036, 1423 |
| BstYI | RGATCY | 3 cut(s) | 267, 1036, 1423 |
| Bsu15I | ATCGAT | 1 cut(s) | 1651 |
| BsuI | GTATCC | 1 cut(s) | 957 |
| BsuRI | GGCC | 3 cut(s) | 161, 882, 913 |
| BsuTUI | ATCGAT | 1 cut(s) | 1651 |
| BtgI | CCRYGG | 2 cut(s) | 837, 1080 |
| BtsCI | GGATG | 2 cut(s) | 667, 1519 |
| BtsI | GCAGTG | 4 cut(s) | 208, 483, 719, 1224 |
| BtsIMutI | CAGTG | 5 cut(s) | 208, 483, 719, 948, 1224 |
| BveI | ACCTGC | 1 cut(s) | 581 |
| Cac8I | GCNNGC | 4 cut(s) | 971, 1168, 1398, 1607 |
| CfoI | GCGC | 1 cut(s) | 148 |
| Cfr13I | GGNCC | 2 cut(s) | 54, 479 |
| ClaI | ATCGAT | 1 cut(s) | 1651 |
| CseI | GACGC | 1 cut(s) | 1449 |
| CsiI | ACCWGGT | 1 cut(s) | 56 |
| Csp6I | GTAC | 3 cut(s) | 228, 283, 901 |
| CviQI | GTAC | 3 cut(s) | 228, 283, 901 |
| DdeI | CTNAG | 3 cut(s) | 297, 1174, 1418 |
| DraI | TTTAAA | 1 cut(s) | 519 |
| EaeI | YGGCCR | 2 cut(s) | 159, 880 |
| Eam1104I | CTCTTC | 3 cut(s) | 309, 423, 1249 |
| EarI | CTCTTC | 3 cut(s) | 309, 423, 1249 |
| Eco130I | CCWWGG | 4 cut(s) | 162, 837, 1080, 1453 |
| Eco32I | GATATC | 2 cut(s) | 624, 1638 |
| Eco47I | GGWCC | 2 cut(s) | 54, 479 |
| Eco57I | CTGAAG | 3 cut(s) | 489, 756, 1230 |
| Eco72I | CACGTG | 1 cut(s) | 578 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 963 |
| EcoRI | GAATTC | 1 cut(s) | 758 |
| EcoRII | CCWGG | 8 cut(s) | 56, 525, 877, 908, 928, 991, 1312, 1506 |
| EcoRV | GATATC | 2 cut(s) | 624, 1638 |
| EcoT14I | CCWWGG | 4 cut(s) | 162, 837, 1080, 1453 |
| EcoT22I | ATGCAT | 1 cut(s) | 778 |
| ErhI | CCWWGG | 4 cut(s) | 162, 837, 1080, 1453 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 498, 530 |
| FaqI | GGGAC | 2 cut(s) | 115, 363 |
| FauI | CCCGC | 1 cut(s) | 1610 |
| FbaI | TGATCA | 2 cut(s) | 604, 1624 |
| Fnu4HI | GCNGC | 4 cut(s) | 548, 588, 732, 1171 |
| FokI | GGATG | 2 cut(s) | 674, 1526 |
| Fsp4HI | GCNGC | 4 cut(s) | 548, 588, 732, 1171 |
| FspBI | CTAG | 4 cut(s) | 416, 1041, 1167, 1263 |
| FspI | TGCGCA | 1 cut(s) | 147 |
| GlaI | GCGC | 1 cut(s) | 147 |
| GluI | GCNGC | 4 cut(s) | 548, 588, 732, 1171 |
| GsuI | CTGGAG | 2 cut(s) | 548, 912 |
| HaeIII | GGCC | 3 cut(s) | 161, 882, 913 |
| HapII | CCGG | 3 cut(s) | 108, 198, 1118 |
| HgaI | GACGC | 1 cut(s) | 1449 |
| HhaI | GCGC | 1 cut(s) | 148 |
| Hin6I | GCGC | 1 cut(s) | 146 |
| HinP1I | GCGC | 1 cut(s) | 146 |
| HincII | GTYRAC | 1 cut(s) | 1484 |
| HindII | GTYRAC | 1 cut(s) | 1484 |
| HindIII | AAGCTT | 1 cut(s) | 407 |
| HinfI | GANTC | 9 cut(s) | 23, 118, 194, 293, 1044, 1106, 1151, 1256, 1268 |
| HpaII | CCGG | 3 cut(s) | 108, 198, 1118 |
| Hpy166II | GTNNAC | 5 cut(s) | 219, 283, 285, 1330, 1484 |
| Hpy188III | TCNNGA | 8 cut(s) | 185, 1118, 1148, 1155, 1427, 1448, 1538, 1556 |
| Hpy8I | GTNNAC | 5 cut(s) | 219, 283, 285, 1330, 1484 |
| HpyAV | CCTTC | 7 cut(s) | 392, 1123, 1156, 1315, 1366, 1471, 1553 |
| HpyCH4III | ACNGT | 4 cut(s) | 232, 687, 1030, 1363 |
| HpyCH4IV | ACGT | 2 cut(s) | 577, 600 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 255, 556, 587, 737, 773, 970 |
| HpyF3I | CTNAG | 3 cut(s) | 297, 1174, 1418 |
| HpySE526I | ACGT | 2 cut(s) | 577, 600 |
| HspAI | GCGC | 1 cut(s) | 146 |
| Kpn2I | TCCGGA | 1 cut(s) | 1117 |
| Ksp22I | TGATCA | 2 cut(s) | 604, 1624 |
| LmnI | GCTCC | 1 cut(s) | 841 |
| Lsp1109I | GCAGC | 2 cut(s) | 534, 718 |
| LweI | GCATC | 6 cut(s) | 196, 409, 448, 652, 785, 853 |
| MabI | ACCWGGT | 1 cut(s) | 56 |
| MaeI | CTAG | 4 cut(s) | 416, 1041, 1167, 1263 |
| MaeII | ACGT | 2 cut(s) | 577, 600 |
| MaeIII | GTNAC | 4 cut(s) | 814, 1145, 1265, 1597 |
| MbiI | CCGCTC | 1 cut(s) | 1173 |
| MfeI | CAATTG | 2 cut(s) | 321, 438 |
| MflI | RGATCY | 3 cut(s) | 267, 1036, 1423 |
| MhlI | GDGCHC | 2 cut(s) | 260, 1332 |
| MlsI | TGGCCA | 2 cut(s) | 161, 882 |
| MluNI | TGGCCA | 2 cut(s) | 161, 882 |
| MlyI | GAGTC | 4 cut(s) | 17, 203, 1038, 1262 |
| MmeI | TCCRAC | 3 cut(s) | 61, 1049, 1104 |
| Mox20I | TGGCCA | 2 cut(s) | 161, 882 |
| Mph1103I | ATGCAT | 1 cut(s) | 778 |
| MroI | TCCGGA | 1 cut(s) | 1117 |
| MroXI | GAANNNNTTC | 2 cut(s) | 873, 1362 |
| MscI | TGGCCA | 2 cut(s) | 161, 882 |
| MseI | TTAA | 5 cut(s) | 518, 656, 857, 1214, 1578 |
| Msp20I | TGGCCA | 2 cut(s) | 161, 882 |
| MspI | CCGG | 3 cut(s) | 108, 198, 1118 |
| MspR9I | CCNGG | 8 cut(s) | 58, 527, 879, 910, 930, 993, 1314, 1508 |
| MunI | CAATTG | 2 cut(s) | 321, 438 |
| Mva1269I | GAATGC | 3 cut(s) | 641, 778, 1308 |
| MvaI | CCWGG | 8 cut(s) | 58, 527, 879, 910, 930, 993, 1314, 1508 |
| MvnI | CGCG | 1 cut(s) | 1443 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 255, 556, 587, 737, 773, 970 |
| NcoI | CCATGG | 2 cut(s) | 837, 1080 |
| NheI | GCTAGC | 1 cut(s) | 1166 |
| NlaIV | GGNNCC | 2 cut(s) | 481, 615 |
| NmuCI | GTSAC | 2 cut(s) | 1145, 1265 |
| NsbI | TGCGCA | 1 cut(s) | 147 |
| NsiI | ATGCAT | 1 cut(s) | 778 |
| NspI | RCATGY | 3 cut(s) | 973, 1462, 1609 |
| PaeI | GCATGC | 2 cut(s) | 973, 1609 |
| PctI | GAATGC | 3 cut(s) | 641, 778, 1308 |
| PdmI | GAANNNNTTC | 2 cut(s) | 873, 1362 |
| PfeI | GAWTC | 5 cut(s) | 118, 293, 1106, 1151, 1256 |
| PfoI | TCCNGGA | 1 cut(s) | 525 |
| PkrI | GCNGC | 4 cut(s) | 549, 589, 733, 1172 |
| PleI | GAGTC | 4 cut(s) | 17, 202, 1038, 1262 |
| PmaCI | CACGTG | 1 cut(s) | 578 |
| PmlI | CACGTG | 1 cut(s) | 578 |
| PpsI | GAGTC | 4 cut(s) | 17, 202, 1038, 1262 |
| Ppu21I | YACGTR | 1 cut(s) | 578 |
| PshBI | ATTAAT | 1 cut(s) | 1578 |
| Psp6I | CCWGG | 8 cut(s) | 56, 525, 877, 908, 928, 991, 1312, 1506 |
| PspCI | CACGTG | 1 cut(s) | 578 |
| PspGI | CCWGG | 8 cut(s) | 56, 525, 877, 908, 928, 991, 1312, 1506 |
| PspN4I | GGNNCC | 2 cut(s) | 481, 615 |
| PspPI | GGNCC | 2 cut(s) | 54, 479 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1202, 1234 |
| PstI | CTGCAG | 2 cut(s) | 552, 823 |
| PsuI | RGATCY | 3 cut(s) | 267, 1036, 1423 |
| RsaI | GTAC | 3 cut(s) | 229, 284, 902 |
| RsaNI | GTAC | 3 cut(s) | 228, 283, 901 |
| SaqAI | TTAA | 5 cut(s) | 518, 656, 857, 1214, 1578 |
| SatI | GCNGC | 4 cut(s) | 548, 588, 732, 1171 |
| Sau96I | GGNCC | 2 cut(s) | 54, 479 |
| SchI | GAGTC | 4 cut(s) | 17, 203, 1038, 1262 |
| ScrFI | CCNGG | 8 cut(s) | 58, 527, 879, 910, 930, 993, 1314, 1508 |
| SduI | GDGCHC | 2 cut(s) | 260, 1332 |
| SexAI | ACCWGGT | 1 cut(s) | 56 |
| SfaNI | GCATC | 6 cut(s) | 196, 409, 448, 652, 785, 853 |
| SfcI | CTRYAG | 3 cut(s) | 384, 548, 819 |
| SinI | GGWCC | 2 cut(s) | 54, 479 |
| SmlI | CTYRAG | 1 cut(s) | 185 |
| SmoI | CTYRAG | 1 cut(s) | 185 |
| SphI | GCATGC | 2 cut(s) | 973, 1609 |
| SsiI | CCGC | 4 cut(s) | 588, 1171, 1533, 1603 |
| SspI | AATATT | 1 cut(s) | 872 |
| SspMI | CTAG | 4 cut(s) | 416, 1041, 1167, 1263 |
| StyD4I | CCNGG | 8 cut(s) | 56, 525, 877, 908, 928, 991, 1312, 1506 |
| StyI | CCWWGG | 4 cut(s) | 162, 837, 1080, 1453 |
| TaaI | ACNGT | 4 cut(s) | 232, 687, 1030, 1363 |
| TaiI | ACGT | 2 cut(s) | 580, 603 |
| TaqI | TCGA | 2 cut(s) | 1346, 1651 |
| TatI | WGTACW | 1 cut(s) | 282 |
| TauI | GCSGC | 2 cut(s) | 590, 1173 |
| TfiI | GAWTC | 5 cut(s) | 118, 293, 1106, 1151, 1256 |
| Tru1I | TTAA | 5 cut(s) | 518, 656, 857, 1214, 1578 |
| Tru9I | TTAA | 5 cut(s) | 518, 656, 857, 1214, 1578 |
| TscAI | CASTG | 5 cut(s) | 208, 490, 719, 948, 1231 |
| TseFI | GTSAC | 2 cut(s) | 1145, 1265 |
| TseI | GCWGC | 2 cut(s) | 547, 731 |
| Tsp45I | GTSAC | 2 cut(s) | 1145, 1265 |
| TspDTI | ATGAA | 9 cut(s) | 17, 347, 441, 717, 785, 908, 1385, 1446, 1485 |
| TspRI | CASTG | 5 cut(s) | 208, 490, 719, 948, 1231 |
| VneI | GTGCAC | 1 cut(s) | 1328 |
| VpaK11BI | GGWCC | 2 cut(s) | 54, 479 |
| VspI | ATTAAT | 1 cut(s) | 1578 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 963 |
| XapI | RAATTY | 5 cut(s) | 499, 758, 1408, 1551, 1583 |
| XceI | RCATGY | 3 cut(s) | 973, 1462, 1609 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 64 |
| XmnI | GAANNNNTTC | 2 cut(s) | 873, 1362 |
| XspI | CTAG | 4 cut(s) | 416, 1041, 1167, 1263 |
| Zsp2I | ATGCAT | 1 cut(s) | 778 |