AT5G44670

cell wall biogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011102
Physical Location & Seq
Reverse (-)
18018905 .. 18021508
2604 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44670.1

Sequence Viewer

Length: 1560 bp
ATGGCTAAAGAGAGAGACCAAAACACTAAAGACAAAAACCTCCTCATCTGTTTCTTATGGAACTTCTCCGCCGAGCTTAAGCTAGCTCTAATGGCGTTACTCGTTCTCTGCACTTTAGCTACTCTCCTCCCTTTTCTACCTTCTTCTTTCTCCATCTCCGCTTCCGAACTCCGTTTCTGCATCTCACGCATCGCCGTAAACTCCACCTCCGTCAACTTCACCACCGTCGTCGAAAAGCCAGTCTTAGATAACGCTGTCAAGTTAACTGAGAAGCCGGTGTTGGATAACGGCGTTACGAAACAGCCGTTAACTGAAGAGAAGGTGTTAAATAACGGCGTTATTAAACGGACGTTTACTGGTTACGGCTGGGCAGCTTATAACTTCGTGTTAATGAACGCTTACAGAGGCGGCGTTAACACATTCGCCGTTATCGGTTTATCATCTAAACCACTTCACGTTTACTCTCATCCCACTTACCGTTGCGAATGGATTCCACTAAACCAATCCGATAACCGGATTTTAACCGACGGTACCAAAATCTTAACCGATTGGGGTTACGGTAGAGTTTACACAACCGTCGTCGTAAACTGTACTTTTCCGTCAAACACCGTGATAAACCCTAAAAACACCGGAGGTACTCTTCTCCTCCACGCAACCACCGGAGATACAGACCGGAACATCACCGATTCAATTCCGGTACTCACCGAAACTCCAAACACCGTCGATTTTGCTCTCTACGAATCCAATCTCCGCCGGCGAGAGAAGTACGATTATCTCTATTGTGGATCTTCTCTCTACGGCAACTTATCACCACAGAGAATCAGAGAATGGATCGCTTACCATGTAAGGTTCTTCGGTGAAAGATCTCATTTTGTTCTACATGACGCCGGAGGGATTACAGAGGAAGTGTTTGAGGTTTTAAAGCCATGGATAGAGCTTGGGAGAGTTACTGTTCATGATATTAGAGAACAAGAGAGATTTGATGGTTATTATCATAATCAATTCATGGTGGTGAATGATTGTTTGCATAGGTATAGATTCATGGCGAAGTGGATGTTTTTCTTCGATGTTGATGAGTTTATTTATGTTCCGGCGAAGAGTTCGATTTCGTCGGTGATGGTATCTTTGGAGGAATATTCTCAGTTTACTATTGAACAGATGCCTATGAGTAGTCAGCTTTGTTACGACGGTGATGGTCCGGCGAGGACTTACAGGAAATGGGGATTTGAGAAATTGGCGTATAGAGATGTGAAGAAAGTACCACGACGGGATAGGAAGTATGCGGTTCAACCGCGGAACGTATTTGCGACAGGGGTTCACATGTCTCAGCATCTACAAGGGAAGACGTATCACAGAGCGGAAGGGAAAATACGCTATTTTCACTACCATGGTTCAATCTCGCAGCGTCGTGAGCCTTGTCGTCATCTTTATAACGGTACCCGTATCGTTCATGAGAACAATCCTTACGTGCTTGATACCACAATGCGTGATATTGGTCTCGCGGTGAAGACGTTTGAGATTAGGACGATTGGAGATCGCTTGCTTAGGACGAGACAATGA

Protein Analysis

519

Amino Acids

59.95

Weight (kDa)

9.05

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_92 PF01697 257 - 472 9.4e-32 Glycosyltransferase family 92
Glyco_tranf_2_4 PF13704 272 - 372 4.3e-09 Glycosyl transferase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20170 AT5G44670
fragaria_vesca FvH4_3g13330 FvH4_3g13330
malus_domestica MD05G1242800.v1.1 MD10G1224800.v1.1
prunus_persica Prupe.4G120600_v2.0.a1
pyrus_communis pycom05g21940 pycom10g18850
rosa_chinensis RchiOBHm_Chr5g0021801
rosa_laevigata RLG00000032629
rosa_multiflora Rmu_co8317171.1_g000001 Rmu_ssc0000023.1_g000003
rosa_roxburghii Rroxscaffold_1G00056920
rosa_rugosa Rorug05G0069600
rosa_samantha Rh5AG158100 Rh5BG157700 Rh5CG171800 Rh5DG157900
rosa_wichuraiana Rw5G014080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 378, 1431
Acc65I GGTACC 2 cut(s) 530, 1436
AccB1I GGYRCC 2 cut(s) 530, 1436
AccBSI CCGCTC 1 cut(s) 1358
AccII CGCG 2 cut(s) 1294, 1502
AciI CCGC 9 cut(s) 69, 159, 408, 751, 1283, 1292, 1294, 1358, 1502
AclWI GGATC 2 cut(s) 793, 839
AcuI CTGAAG 1 cut(s) 333
AcyI GRCGYC 1 cut(s) 885
AfaI GTAC 7 cut(s) 532, 592, 637, 699, 767, 1260, 1438
AfiI CCNNNNNNNGG 1 cut(s) 513
AflII CTTAAG 1 cut(s) 77
AflIII ACRYGT 1 cut(s) 1320
AgsI TTSAA 4 cut(s) 690, 1154, 1289, 1395
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 7 cut(s) 76, 82, 86, 119, 374, 937, 1177
AluI AGCT 7 cut(s) 76, 82, 86, 119, 374, 937, 1177
Alw26I GTCTC 4 cut(s) 9, 1329, 1502, 1546
AlwI GGATC 2 cut(s) 793, 839
ApeKI GCWGC 2 cut(s) 371, 1402
ArsI GACNNNNNNTTYG 2 cut(s) 225, 257
Asp700I GAANNNNTTC 1 cut(s) 489
Asp718I GGTACC 2 cut(s) 530, 1436
AspS9I GGNCC 1 cut(s) 1196
AsuHPI GGTGA 9 cut(s) 211, 673, 694, 801, 869, 1024, 1126, 1202, 1516
AsuNHI GCTAGC 1 cut(s) 82
AvaII GGWCC 1 cut(s) 1196
BanI GGYRCC 2 cut(s) 530, 1436
BarI GAAGNNNNNNTAC 2 cut(s) 1353, 1385
BbsI GAAGAC 2 cut(s) 1349, 1514
BbvI GCAGC 2 cut(s) 383, 1414
BccI CCATC 4 cut(s) 161, 977, 1111, 1187
BceAI ACGGC 7 cut(s) 179, 289, 304, 349, 379, 410, 814
BcoDI GTCTC 4 cut(s) 9, 1329, 1502, 1546
BfaI CTAG 1 cut(s) 83
BfrI CTTAAG 1 cut(s) 77
BglII AGATCT 1 cut(s) 863
BisI GCNGC 3 cut(s) 372, 409, 1403
BlsI GCNGC 3 cut(s) 373, 410, 1404
Bme18I GGWCC 1 cut(s) 1196
BmgT120I GGNCC 1 cut(s) 1196
BmiI GGNNCC 2 cut(s) 532, 1438
BmsI GCATC 4 cut(s) 189, 198, 1149, 1339
BmtI GCTAGC 1 cut(s) 86
BpiI GAAGAC 2 cut(s) 1349, 1514
Bpu10I CCTNAGC 1 cut(s) 1544
BsaAI YACGTR 1 cut(s) 1468
BsaHI GRCGYC 1 cut(s) 885
BsaI GGTCTC 2 cut(s) 9, 1502
BsaJI CCNNGG 3 cut(s) 926, 1292, 1387
BsaWI WCCGGW 5 cut(s) 513, 629, 659, 672, 694
BsaXI ACNNNNNCTCC 4 cut(s) 191, 221, 694, 724
Bsc4I CCNNNNNNNGG 1 cut(s) 513
Bse118I RCCGGY 2 cut(s) 274, 753
Bse1I ACTGG 2 cut(s) 239, 361
BseDI CCNNGG 3 cut(s) 926, 1292, 1387
BseGI GGATG 2 cut(s) 466, 1059
BseLI CCNNNNNNNGG 1 cut(s) 513
BseMII CTCAG 3 cut(s) 258, 1154, 1340
BseNI ACTGG 2 cut(s) 239, 361
BseRI GAGGAG 3 cut(s) 32, 116, 635
BseXI GCAGC 2 cut(s) 383, 1414
BseYI CCCAGC 1 cut(s) 366
BsgI GTGCAG 1 cut(s) 94
Bsh1236I CGCG 2 cut(s) 1294, 1502
BshNI GGYRCC 2 cut(s) 530, 1436
BslI CCNNNNNNNGG 1 cut(s) 513
BsmAI GTCTC 4 cut(s) 9, 1329, 1502, 1546
Bso31I GGTCTC 2 cut(s) 9, 1502
Bsp143I GATC 4 cut(s) 785, 831, 863, 1534
Bsp19I CCATGG 2 cut(s) 926, 1387
BspACI CCGC 9 cut(s) 69, 159, 408, 751, 1283, 1292, 1294, 1358, 1502
BspCNI CTCAG 3 cut(s) 259, 1153, 1339
BspFNI CGCG 2 cut(s) 1294, 1502
BspHI TCATGA 2 cut(s) 955, 1450
BspLI GGNNCC 2 cut(s) 532, 1438
BspOI GCTAGC 1 cut(s) 86
BspPI GGATC 2 cut(s) 793, 839
BspT107I GGYRCC 2 cut(s) 530, 1436
BspTI CTTAAG 1 cut(s) 77
BspTNI GGTCTC 2 cut(s) 9, 1502
BsrBI CCGCTC 1 cut(s) 1358
BsrFI RCCGGY 2 cut(s) 274, 753
BsrI ACTGG 2 cut(s) 239, 361
BssAI RCCGGY 2 cut(s) 274, 753
BssECI CCNNGG 3 cut(s) 926, 1292, 1387
BssMI GATC 4 cut(s) 785, 831, 863, 1534
BssNI GRCGYC 1 cut(s) 885
BssT1I CCWWGG 2 cut(s) 926, 1387
Bst6I CTCTTC 3 cut(s) 309, 645, 1091
BstACI GRCGYC 1 cut(s) 885
BstAFI CTTAAG 1 cut(s) 77
BstBAI YACGTR 1 cut(s) 1468
BstC8I GCNNGC 3 cut(s) 84, 755, 1541
BstDEI CTNAG 5 cut(s) 244, 267, 1140, 1326, 1544
BstDSI CCRYGG 3 cut(s) 926, 1292, 1387
BstF5I GGATG 2 cut(s) 466, 1059
BstFNI CGCG 2 cut(s) 1294, 1502
BstKTI GATC 4 cut(s) 788, 834, 866, 1537
BstMAI GTCTC 4 cut(s) 9, 1329, 1502, 1546
BstMBI GATC 4 cut(s) 785, 831, 863, 1534
BstMWI GCNNNNNNNGC 3 cut(s) 92, 186, 1411
BstNSI RCATGY 1 cut(s) 1324
BstUI CGCG 2 cut(s) 1294, 1502
BstV1I GCAGC 2 cut(s) 383, 1414
BstV2I GAAGAC 2 cut(s) 1349, 1514
BstX2I RGATCY 2 cut(s) 785, 863
BstYI RGATCY 2 cut(s) 785, 863
BtgI CCRYGG 3 cut(s) 926, 1292, 1387
BtgZI GCGATG 1 cut(s) 175
BtsCI GGATG 2 cut(s) 466, 1059
Cac8I GCNNGC 3 cut(s) 84, 755, 1541
CciI TCATGA 2 cut(s) 955, 1450
Cfr10I RCCGGY 2 cut(s) 274, 753
Cfr13I GGNCC 1 cut(s) 1196
Cfr42I CCGCGG 1 cut(s) 1295
CseI GACGC 2 cut(s) 893, 1394
Csp6I GTAC 7 cut(s) 531, 591, 636, 698, 766, 1259, 1437
CviAII CATG 9 cut(s) 842, 881, 927, 956, 1006, 1042, 1321, 1388, 1451
CviQI GTAC 7 cut(s) 531, 591, 636, 698, 766, 1259, 1437
DdeI CTNAG 5 cut(s) 244, 267, 1140, 1326, 1544
DpnI GATC 4 cut(s) 787, 833, 865, 1536
DpnII GATC 4 cut(s) 785, 831, 863, 1534
DraI TTTAAA 1 cut(s) 921
Eam1104I CTCTTC 3 cut(s) 309, 645, 1091
EarI CTCTTC 3 cut(s) 309, 645, 1091
EciI GGCGGA 2 cut(s) 58, 740
Eco130I CCWWGG 2 cut(s) 926, 1387
Eco31I GGTCTC 2 cut(s) 9, 1502
Eco47I GGWCC 1 cut(s) 1196
Eco57I CTGAAG 1 cut(s) 333
EcoT14I CCWWGG 2 cut(s) 926, 1387
ErhI CCWWGG 2 cut(s) 926, 1387
FaeI CATG 9 cut(s) 845, 884, 930, 959, 1009, 1045, 1324, 1391, 1454
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FatI CATG 9 cut(s) 841, 880, 926, 955, 1005, 1041, 1320, 1387, 1450
Fnu4HI GCNGC 3 cut(s) 372, 409, 1403
FokI GGATG 2 cut(s) 453, 1066
Fsp4HI GCNGC 3 cut(s) 372, 409, 1403
FspBI CTAG 1 cut(s) 83
GluI GCNGC 3 cut(s) 372, 409, 1403
GsaI CCCAGC 1 cut(s) 370
HgaI GACGC 2 cut(s) 893, 1394
Hin1I GRCGYC 1 cut(s) 885
Hin1II CATG 9 cut(s) 845, 884, 930, 959, 1009, 1045, 1324, 1391, 1454
HincII GTYRAC 4 cut(s) 214, 264, 309, 415
HindII GTYRAC 4 cut(s) 214, 264, 309, 415
HinfI GANTC 5 cut(s) 490, 686, 740, 819, 1038
HpaI GTTAAC 3 cut(s) 264, 309, 415
HphI GGTGA 9 cut(s) 211, 673, 694, 801, 869, 1024, 1126, 1202, 1516
Hpy188I TCNGA 3 cut(s) 166, 508, 824
Hpy188III TCNNGA 3 cut(s) 956, 1409, 1451
HpyAV CCTTC 3 cut(s) 150, 313, 1355
HpyCH4IV ACGT 6 cut(s) 350, 456, 1299, 1346, 1467, 1511
HpyCH4V TGCA 3 cut(s) 111, 180, 1027
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 186, 1411
HpyF3I CTNAG 5 cut(s) 244, 267, 1140, 1326, 1544
HpySE526I ACGT 6 cut(s) 350, 456, 1299, 1346, 1467, 1511
Hsp92I GRCGYC 1 cut(s) 885
Hsp92II CATG 9 cut(s) 845, 884, 930, 959, 1009, 1045, 1324, 1391, 1454
KpnI GGTACC 2 cut(s) 534, 1440
KroI GCCGGC 1 cut(s) 753
KroNI GCCGGC 1 cut(s) 755
KspAI GTTAAC 3 cut(s) 264, 309, 415
KspI CCGCGG 1 cut(s) 1295
Kzo9I GATC 4 cut(s) 785, 831, 863, 1534
Lsp1109I GCAGC 2 cut(s) 383, 1414
LweI GCATC 4 cut(s) 189, 198, 1149, 1339
MaeI CTAG 1 cut(s) 83
MaeII ACGT 6 cut(s) 350, 456, 1299, 1346, 1467, 1511
MaeIII GTNAC 6 cut(s) 96, 292, 359, 554, 946, 1181
MalI GATC 4 cut(s) 787, 833, 865, 1536
MbiI CCGCTC 1 cut(s) 1358
MboI GATC 4 cut(s) 785, 831, 863, 1534
MflI RGATCY 2 cut(s) 785, 863
MluCI AATT 3 cut(s) 690, 1001, 1232
MmeI TCCRAC 1 cut(s) 261
MreI CGCCGGCG 1 cut(s) 753
MroNI GCCGGC 1 cut(s) 753
MroXI GAANNNNTTC 1 cut(s) 489
MslI CAYNNNNRTG 2 cut(s) 1010, 1386
MspA1I CMGCKG 1 cut(s) 1294
MspCI CTTAAG 1 cut(s) 77
MvnI CGCG 2 cut(s) 1294, 1502
MwoI GCNNNNNNNGC 3 cut(s) 92, 186, 1411
NaeI GCCGGC 1 cut(s) 755
NcoI CCATGG 2 cut(s) 926, 1387
NdeII GATC 4 cut(s) 785, 831, 863, 1534
NgoMIV GCCGGC 1 cut(s) 753
NheI GCTAGC 1 cut(s) 82
NlaIII CATG 9 cut(s) 845, 884, 930, 959, 1009, 1045, 1324, 1391, 1454
NlaIV GGNNCC 2 cut(s) 532, 1438
NmeAIII GCCGAG 1 cut(s) 97
NspI RCATGY 1 cut(s) 1324
PagI TCATGA 2 cut(s) 955, 1450
PciI ACATGT 1 cut(s) 1320
PcsI WCGNNNNNNNCGW 1 cut(s) 302
PdiI GCCGGC 1 cut(s) 755
PdmI GAANNNNTTC 1 cut(s) 489
PfeI GAWTC 5 cut(s) 490, 686, 740, 819, 1038
PkrI GCNGC 3 cut(s) 373, 410, 1404
Ppu21I YACGTR 1 cut(s) 1468
PscI ACATGT 1 cut(s) 1320
PsiI TTATAA 2 cut(s) 378, 1431
PspFI CCCAGC 1 cut(s) 366
PspN4I GGNNCC 2 cut(s) 532, 1438
PspPI GGNCC 1 cut(s) 1196
PsrI GAACNNNNNNTAC 2 cut(s) 1448, 1480
PsuI RGATCY 2 cut(s) 785, 863
RsaI GTAC 7 cut(s) 532, 592, 637, 699, 767, 1260, 1438
RsaNI GTAC 7 cut(s) 531, 591, 636, 698, 766, 1259, 1437
RseI CAYNNNNRTG 2 cut(s) 1010, 1386
SacII CCGCGG 1 cut(s) 1295
SatI GCNGC 3 cut(s) 372, 409, 1403
Sau3AI GATC 4 cut(s) 785, 831, 863, 1534
Sau96I GGNCC 1 cut(s) 1196
SfaNI GCATC 4 cut(s) 189, 198, 1149, 1339
Sfr303I CCGCGG 1 cut(s) 1295
SgrAI CRCCGGYG 1 cut(s) 753
SgrBI CCGCGG 1 cut(s) 1295
SinI GGWCC 1 cut(s) 1196
SmiMI CAYNNNNRTG 2 cut(s) 1010, 1386
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 3 cut(s) 690, 1001, 1232
SsiI CCGC 9 cut(s) 69, 159, 408, 751, 1283, 1292, 1294, 1358, 1502
SspI AATATT 1 cut(s) 1136
SspMI CTAG 1 cut(s) 83
StyI CCWWGG 2 cut(s) 926, 1387
TaiI ACGT 6 cut(s) 353, 459, 1302, 1349, 1470, 1514
TaqI TCGA 4 cut(s) 231, 723, 1065, 1103
TasI AATT 3 cut(s) 690, 1001, 1232
TatI WGTACW 1 cut(s) 590
TauI GCSGC 1 cut(s) 411
TfiI GAWTC 5 cut(s) 490, 686, 740, 819, 1038
TseI GCWGC 2 cut(s) 371, 1402
TspDTI ATGAA 5 cut(s) 407, 944, 994, 1030, 1439
TspGWI ACGGA 4 cut(s) 161, 199, 361, 588
Vha464I CTTAAG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 1196
XceI RCATGY 1 cut(s) 1324
XmnI GAANNNNTTC 1 cut(s) 489
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.