Rmu_ssc0000023.1_g000003

Glycosyl transferase family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000023.1
OG0011102
Physical Location & Seq
Reverse (-)
6191 .. 7940
1750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000023.1_g000003.1.cds

Sequence Viewer

Length: 627 bp
atggagttggggtacgtgaccgtgcacgatataagagatcaggagaggtttgatgggtactatcacaaccagttcatggtggtgaatgattgtttgcataggtataaattcatggcaaagtggatgttcttttttgatgtggatgagtatatctatatgcctcccaagagcaccctcaaaactgttctggattctctggctgagtattcacagttcaccattgaacagatgccaatgagcaacaagctctgccgcattgaagattatcacaaaactcacagaaaatgggggtttgagaaacttgtgttcaaggatgtgaagacaggcataagaagagaccgaaaatacgctgtgcgaccgcgcaatgtgtatggcaccggggtgcacatgtcgcagaacctagctgggaagacgacgcacaaaaccgagaacaggatcaaatatttccattaccacggtaccattgcagacaggcgtgagccttgtaagaagctgatcaatgacacacagatctaccttgacaaagtcccttatgttatggacacaaccatgagagatgttgctggggctgtgaagagatttgagcaaagaatgattggatccaggttacaacagactaggcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009987 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

208

Amino Acids

25.05

Weight (kDa)

9.5

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20170 AT5G44670
fragaria_vesca FvH4_3g13330 FvH4_3g13330
malus_domestica MD05G1242800.v1.1 MD10G1224800.v1.1
prunus_persica Prupe.4G120600_v2.0.a1
pyrus_communis pycom05g21940 pycom10g18850
rosa_chinensis RchiOBHm_Chr5g0021801
rosa_laevigata RLG00000032629
rosa_multiflora Rmu_co8317171.1_g000001 Rmu_ssc0000023.1_g000003
rosa_roxburghii Rroxscaffold_1G00056920
rosa_rugosa Rorug05G0069600
rosa_samantha Rh5AG158100 Rh5BG157700 Rh5CG171800 Rh5DG157900
rosa_wichuraiana Rw5G014080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 458
AccB1I GGYRCC 2 cut(s) 374, 458
AccB7I CCANNNNNTGG 1 cut(s) 76
AccII CGCG 1 cut(s) 361
AciI CCGC 2 cut(s) 253, 359
AclWI GGATC 3 cut(s) 443, 594, 607
AcsI RAATTY 1 cut(s) 107
AfaI GTAC 3 cut(s) 14, 59, 460
AfiI CCNNNNNNNGG 2 cut(s) 76, 432
AflIII ACRYGT 1 cut(s) 387
AgsI TTSAA 3 cut(s) 224, 260, 310
AjnI CCWGG 1 cut(s) 602
AleI CACNNNNGTG 1 cut(s) 380
AluBI AGCT 3 cut(s) 247, 404, 493
AluI AGCT 3 cut(s) 247, 404, 493
Alw21I GWGCWC 3 cut(s) 27, 173, 387
Alw26I GTCTC 1 cut(s) 330
Alw44I GTGCAC 2 cut(s) 23, 383
AlwI GGATC 3 cut(s) 443, 594, 607
ApaLI GTGCAC 2 cut(s) 23, 383
ApoI RAATTY 1 cut(s) 107
Asp718I GGTACC 1 cut(s) 458
AspLEI GCGC 1 cut(s) 363
AsuC2I CCSGG 1 cut(s) 379
AsuHPI GGTGA 2 cut(s) 94, 208
BaeGI GKGCMC 2 cut(s) 27, 387
BaeI ACNNNNGTAYC 2 cut(s) 442, 475
BamHI GGATCC 1 cut(s) 599
BanI GGYRCC 2 cut(s) 374, 458
BbsI GAAGAC 2 cut(s) 326, 416
Bbv12I GWGCWC 3 cut(s) 27, 173, 387
BccI CCATC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 604
BclI TGATCA 1 cut(s) 495
BcnI CCSGG 1 cut(s) 379
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 2 cut(s) 401, 618
BglII AGATCT 1 cut(s) 510
BisI GCNGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 254
Bme1390I CCNGG 2 cut(s) 379, 604
BmiI GGNNCC 3 cut(s) 376, 460, 601
BmrFI CCNGG 2 cut(s) 379, 604
BmsI GCATC 1 cut(s) 219
BpiI GAAGAC 2 cut(s) 326, 416
BpuMI CCSGG 1 cut(s) 379
BsaAI YACGTR 1 cut(s) 16
BsaI GGTCTC 1 cut(s) 330
BsaJI CCNNGG 2 cut(s) 378, 454
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 432
Bse1I ACTGG 1 cut(s) 70
Bse3DI GCAATG 2 cut(s) 370, 462
BseBI CCWGG 1 cut(s) 604
BseDI CCNNGG 2 cut(s) 378, 454
BseGI GGATG 3 cut(s) 129, 148, 319
BseLI CCNNNNNNNGG 2 cut(s) 76, 432
BseMI GCAATG 2 cut(s) 370, 462
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 70
BseSI GKGCMC 2 cut(s) 27, 387
BseYI CCCAGC 2 cut(s) 404, 563
Bsh1236I CGCG 1 cut(s) 361
Bsh1285I CGRYCG 1 cut(s) 359
BshNI GGYRCC 2 cut(s) 374, 458
BsiEI CGRYCG 1 cut(s) 359
BsiHKAI GWGCWC 3 cut(s) 27, 173, 387
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 1 cut(s) 512
BslI CCNNNNNNNGG 2 cut(s) 76, 432
BsmAI GTCTC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 512
Bso31I GGTCTC 1 cut(s) 330
Bsp1286I GDGCHC 3 cut(s) 27, 173, 387
Bsp143I GATC 5 cut(s) 37, 435, 495, 510, 599
BspACI CCGC 2 cut(s) 253, 359
BspCNI CTCAG 1 cut(s) 193
BspFNI CGCG 1 cut(s) 361
BspLI GGNNCC 3 cut(s) 376, 460, 601
BspPI GGATC 3 cut(s) 443, 594, 607
BspT107I GGYRCC 2 cut(s) 374, 458
BspTNI GGTCTC 1 cut(s) 330
BsrDI GCAATG 2 cut(s) 370, 462
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 378, 454
BssMI GATC 5 cut(s) 37, 435, 495, 510, 599
Bst2UI CCWGG 1 cut(s) 604
Bst4CI ACNGT 4 cut(s) 22, 184, 213, 458
Bst6I CTCTTC 2 cut(s) 328, 569
BstBAI YACGTR 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 201
BstDSI CCRYGG 1 cut(s) 454
BstF5I GGATG 3 cut(s) 129, 148, 319
BstFNI CGCG 1 cut(s) 361
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 5 cut(s) 40, 438, 498, 513, 602
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 5 cut(s) 37, 435, 495, 510, 599
BstMCI CGRYCG 1 cut(s) 359
BstMWI GCNNNNNNNGC 1 cut(s) 391
BstNI CCWGG 1 cut(s) 604
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 2 cut(s) 377, 602
BstSLI GKGCMC 2 cut(s) 27, 387
BstUI CGCG 1 cut(s) 361
BstV2I GAAGAC 2 cut(s) 326, 416
BstX2I RGATCY 2 cut(s) 510, 599
BstYI RGATCY 2 cut(s) 510, 599
BtgI CCRYGG 1 cut(s) 454
BtsCI GGATG 3 cut(s) 129, 148, 319
CfoI GCGC 1 cut(s) 363
CseI GACGC 1 cut(s) 424
Csp6I GTAC 3 cut(s) 13, 58, 459
CviAII CATG 4 cut(s) 76, 112, 388, 550
CviJI RGCY 6 cut(s) 200, 247, 404, 481, 493, 569
CviKI_1 RGCY 6 cut(s) 200, 247, 404, 481, 493, 569
CviQI GTAC 3 cut(s) 13, 58, 459
DdeI CTNAG 1 cut(s) 201
DpnI GATC 5 cut(s) 39, 437, 497, 512, 601
DpnII GATC 5 cut(s) 37, 435, 495, 510, 599
Eam1104I CTCTTC 2 cut(s) 328, 569
EarI CTCTTC 2 cut(s) 328, 569
Eco31I GGTCTC 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 602
FaeI CATG 4 cut(s) 79, 115, 391, 553
FaqI GGGAC 1 cut(s) 512
FatI CATG 4 cut(s) 75, 111, 387, 549
FbaI TGATCA 1 cut(s) 495
Fnu4HI GCNGC 1 cut(s) 253
FokI GGATG 3 cut(s) 136, 155, 326
Fsp4HI GCNGC 1 cut(s) 253
FspBI CTAG 2 cut(s) 401, 618
GlaI GCGC 1 cut(s) 362
GluI GCNGC 1 cut(s) 253
GsaI CCCAGC 2 cut(s) 408, 567
HapII CCGG 1 cut(s) 378
HgaI GACGC 1 cut(s) 424
HhaI GCGC 1 cut(s) 363
Hin1II CATG 4 cut(s) 79, 115, 391, 553
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HinfI GANTC 1 cut(s) 191
HpaII CCGG 1 cut(s) 378
HphI GGTGA 2 cut(s) 94, 208
Hpy166II GTNNAC 3 cut(s) 25, 216, 385
Hpy188III TCNNGA 2 cut(s) 41, 188
Hpy8I GTNNAC 3 cut(s) 25, 216, 385
Hpy99I CGWCG 1 cut(s) 418
HpyCH4III ACNGT 4 cut(s) 22, 184, 213, 458
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 25, 97, 385, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 391
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 4 cut(s) 79, 115, 391, 553
HspAI GCGC 1 cut(s) 361
KpnI GGTACC 1 cut(s) 462
Ksp22I TGATCA 1 cut(s) 495
Kzo9I GATC 5 cut(s) 37, 435, 495, 510, 599
LweI GCATC 1 cut(s) 219
MaeI CTAG 2 cut(s) 401, 618
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 16, 606
MalI GATC 5 cut(s) 39, 437, 497, 512, 601
MboI GATC 5 cut(s) 37, 435, 495, 510, 599
MboII GAAGA 5 cut(s) 272, 331, 345, 421, 586
MflI RGATCY 2 cut(s) 510, 599
MhlI GDGCHC 3 cut(s) 27, 173, 387
MluCI AATT 1 cut(s) 107
MnlI CCTC 3 cut(s) 39, 171, 185
MslI CAYNNNNRTG 3 cut(s) 80, 380, 548
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 2 cut(s) 379, 604
MvaI CCWGG 1 cut(s) 604
MvnI CGCG 1 cut(s) 361
MwoI GCNNNNNNNGC 1 cut(s) 391
NciI CCSGG 1 cut(s) 379
NdeII GATC 5 cut(s) 37, 435, 495, 510, 599
NlaIII CATG 4 cut(s) 79, 115, 391, 553
NlaIV GGNNCC 3 cut(s) 376, 460, 601
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 1 cut(s) 391
OliI CACNNNNGTG 1 cut(s) 380
PciI ACATGT 1 cut(s) 387
PfeI GAWTC 1 cut(s) 191
PflFI GACNNNGTC 1 cut(s) 524
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 1 cut(s) 254
Ppu21I YACGTR 1 cut(s) 16
PscI ACATGT 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 602
PspFI CCCAGC 2 cut(s) 404, 563
PspGI CCWGG 1 cut(s) 602
PspN4I GGNNCC 3 cut(s) 376, 460, 601
PsrI GAACNNNNNNTAC 2 cut(s) 197, 229
PsuI RGATCY 2 cut(s) 510, 599
PsyI GACNNNGTC 1 cut(s) 524
RsaI GTAC 3 cut(s) 14, 59, 460
RsaNI GTAC 3 cut(s) 13, 58, 459
RseI CAYNNNNRTG 3 cut(s) 80, 380, 548
SatI GCNGC 1 cut(s) 253
Sau3AI GATC 5 cut(s) 37, 435, 495, 510, 599
ScrFI CCNGG 2 cut(s) 379, 604
SduI GDGCHC 3 cut(s) 27, 173, 387
SetI ASST 9 cut(s) 18, 50, 104, 249, 402, 406, 495, 519, 608
SfaNI GCATC 1 cut(s) 219
SmiMI CAYNNNNRTG 3 cut(s) 80, 380, 548
Sse9I AATT 1 cut(s) 107
SsiI CCGC 2 cut(s) 253, 359
SspI AATATT 1 cut(s) 443
SspMI CTAG 2 cut(s) 401, 618
StyD4I CCNGG 2 cut(s) 377, 602
TaaI ACNGT 4 cut(s) 22, 184, 213, 458
TaiI ACGT 1 cut(s) 18
TaqII GACCGA 1 cut(s) 354
TasI AATT 1 cut(s) 107
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 1 cut(s) 191
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 64, 100
Tth111I GACNNNGTC 1 cut(s) 524
Van91I CCANNNNNTGG 1 cut(s) 76
VneI GTGCAC 2 cut(s) 23, 383
XapI RAATTY 1 cut(s) 107
XceI RCATGY 1 cut(s) 391
XspI CTAG 2 cut(s) 401, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.