Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8317171.1

Orthogroup ID

OG0011102

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 773

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8317171.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 772 bp

atggccaaagagaagcagaaagaagagaagaagctctacgtcggcatcgcatggaactacaccgccgagctgaagctgctgcttacagctctcctcatcctctgcactctcgccaccctcctccagttcatcccttcccgcttcaccatctccacctccgacctaagggtctgcatctcccgggtcctcactccggccctgccccagcaggcccaacccccggcccaacaacaagatgctattgtgactaatgttgatatttcagctgctgccgcttcaccgccaccgcttcagtctcctccgcctcctccgccgccgccgacggaggaggttctgagcaacggaataataaaaagggtgtttatcccgcacggcgcggcggcgtatagctatatcaacatgggagcttacagaggaggaatgaacacttttgctataatgggtttagcgtcgaagcctctccacgtgtactcaaatccgacgtacgaatgccagtggatccccaccgtcaactcctccgccaccgtctccgccgtcggatacaagatcctaccggactggggctacggccgagtttacaccgttgtggtggttaactgcacattttctcagcccgttaattccgacaactccggcggcaagttggtccttctcgcctccaccggcggcggcggcgaccggaatttgaacgtcaccgacgaaatcgaggccttgacggaaaacccaggaagcttaaacccttcaatcttcacttccaagcctaaatatgatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009987 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_92

Protein Analysis

257

Amino Acids

27.62

Weight (kDa)

7.61

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20170 AT5G44670
fragaria_vesca	FvH4_3g13330 FvH4_3g13330
malus_domestica	MD05G1242800.v1.1 MD10G1224800.v1.1
prunus_persica	Prupe.4G120600_v2.0.a1
pyrus_communis	pycom05g21940 pycom10g18850
rosa_chinensis	RchiOBHm_Chr5g0021801
rosa_laevigata	RLG00000032629
rosa_multiflora	Rmu_co8317171.1_g000001 Rmu_ssc0000023.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056920
rosa_rugosa	Rorug05G0069600
rosa_samantha	Rh5AG158100 Rh5BG157700 Rh5CG171800 Rh5DG157900
rosa_wichuraiana	Rw5G014080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AccII	CGCG	1 cut(s)	377
AclWI	GGATC	3 cut(s)	493, 506, 541
AcoI	YGGCCR	2 cut(s)	3, 568
AcsI	RAATTY	1 cut(s)	682
AcuI	CTGAAG	2 cut(s)	92, 275
AcvI	CACGTG	1 cut(s)	466
AfaI	GTAC	2 cut(s)	470, 485
AfiI	CCNNNNNNNGG	4 cut(s)	165, 193, 220, 560
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	2 cut(s)	688, 744
AjnI	CCWGG	1 cut(s)	724
AleI	CACNNNNGTG	1 cut(s)	584
AluBI	AGCT	8 cut(s)	34, 70, 76, 89, 266, 390, 407, 732
AluI	AGCT	8 cut(s)	34, 70, 76, 89, 266, 390, 407, 732
Alw26I	GTCTC	2 cut(s)	300, 532
AlwI	GGATC	3 cut(s)	493, 506, 541
AlwNI	CAGNNNCTG	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	6 cut(s)	3, 195, 210, 222, 568, 708
ApeKI	GCWGC	4 cut(s)	76, 79, 266, 269
ApoI	RAATTY	1 cut(s)	682
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	5 cut(s)	184, 196, 211, 223, 646
AsuC2I	CCSGG	3 cut(s)	181, 182, 221
AsuHPI	GGTGA	3 cut(s)	136, 270, 685
AvaI	CYCGRG	1 cut(s)	180
AvaII	GGWCC	2 cut(s)	184, 646
AxyI	CCTNAGG	1 cut(s)	164
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	498
BarI	GAAGNNNNNNTAC	2 cut(s)	20, 52
BbrPI	CACGTG	1 cut(s)	466
BbvI	GCAGC	4 cut(s)	63, 66, 253, 256
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	3 cut(s)	388, 518, 583
BciT130I	CCWGG	1 cut(s)	726
BciVI	GTATCC	1 cut(s)	533
BcnI	CCSGG	3 cut(s)	181, 182, 221
BcoDI	GTCTC	2 cut(s)	300, 532
BfuI	GTATCC	1 cut(s)	533
Bme1390I	CCNGG	4 cut(s)	181, 182, 221, 726
Bme18I	GGWCC	2 cut(s)	184, 646
BmeT110I	CYCGRG	1 cut(s)	180
BmgT120I	GGNCC	5 cut(s)	184, 196, 211, 223, 646
BmiI	GGNNCC	2 cut(s)	185, 500
BmrFI	CCNGG	4 cut(s)	181, 182, 221, 726
BmrI	ACTGGG	1 cut(s)	568
BmsI	GCATC	3 cut(s)	54, 183, 226
BmuI	ACTGGG	1 cut(s)	568
BpmI	CTGGAG	1 cut(s)	107
BpuMI	CCSGG	3 cut(s)	181, 182, 221
BsaAI	YACGTR	1 cut(s)	466
BsaJI	CCNNGG	3 cut(s)	180, 219, 724
BsaWI	WCCGGW	2 cut(s)	553, 678
Bsc4I	CCNNNNNNNGG	4 cut(s)	165, 193, 220, 560
Bse118I	RCCGGY	1 cut(s)	662
Bse1I	ACTGG	3 cut(s)	124, 493, 563
Bse21I	CCTNAGG	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	3 cut(s)	180, 219, 724
BseGI	GGATG	2 cut(s)	96, 129
BseLI	CCNNNNNNNGG	4 cut(s)	165, 193, 220, 560
BseMII	CTCAG	2 cut(s)	326, 623
BseNI	ACTGG	3 cut(s)	124, 493, 563
BseRI	GAGGAG	7 cut(s)	83, 110, 288, 297, 341, 429, 505
BseX3I	CGGCCG	1 cut(s)	568
BseXI	GCAGC	4 cut(s)	63, 66, 253, 256
BseYI	CCCAGC	1 cut(s)	204
BsgI	GTGCAG	2 cut(s)	88, 583
Bsh1236I	CGCG	1 cut(s)	377
Bsh1285I	CGRYCG	2 cut(s)	571, 679
BshFI	GGCC	6 cut(s)	5, 197, 212, 224, 570, 710
BsiEI	CGRYCG	2 cut(s)	571, 679
BsiHKCI	CYCGRG	1 cut(s)	180
BsiSI	CCGG	7 cut(s)	181, 194, 221, 554, 633, 663, 679
BsiWI	CGTACG	1 cut(s)	483
BslI	CCNNNNNNNGG	4 cut(s)	165, 193, 220, 560
BsmAI	GTCTC	2 cut(s)	300, 532
BsmBI	CGTCTC	1 cut(s)	532
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	6 cut(s)	5, 197, 212, 224, 570, 710
BsoBI	CYCGRG	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	498, 546
BspANI	GGCC	6 cut(s)	5, 197, 212, 224, 570, 710
BspCNI	CTCAG	2 cut(s)	327, 622
BspFNI	CGCG	1 cut(s)	377
BspLI	GGNNCC	2 cut(s)	185, 500
BspPI	GGATC	3 cut(s)	493, 506, 541
BsrFI	RCCGGY	1 cut(s)	662
BsrI	ACTGG	3 cut(s)	124, 493, 563
BssAI	RCCGGY	1 cut(s)	662
BssECI	CCNNGG	3 cut(s)	180, 219, 724
BssMI	GATC	2 cut(s)	498, 546
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	3 cut(s)	508, 526, 583
Bst6I	CTCTTC	1 cut(s)	18
BstBAI	YACGTR	1 cut(s)	466
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	3 cut(s)	164, 335, 609
BstF5I	GGATG	2 cut(s)	96, 129
BstFNI	CGCG	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	2 cut(s)	501, 549
BstMAI	GTCTC	2 cut(s)	300, 532
BstMBI	GATC	2 cut(s)	498, 546
BstMCI	CGRYCG	2 cut(s)	571, 679
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 272, 310, 672
BstNI	CCWGG	1 cut(s)	726
BstSCI	CCNGG	4 cut(s)	179, 180, 219, 724
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	4 cut(s)	63, 66, 253, 256
BstX2I	RGATCY	2 cut(s)	498, 546
BstYI	RGATCY	2 cut(s)	498, 546
BstZI	CGGCCG	1 cut(s)	568
Bsu36I	CCTNAGG	1 cut(s)	164
BsuI	GTATCC	1 cut(s)	533
BsuRI	GGCC	6 cut(s)	5, 197, 212, 224, 570, 710
BtgZI	GCGATG	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	96, 129
BtsIMutI	CAGTG	1 cut(s)	500
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	1 cut(s)	377
Cfr10I	RCCGGY	1 cut(s)	662
Cfr13I	GGNCC	5 cut(s)	184, 196, 211, 223, 646
Cfr9I	CCCGGG	1 cut(s)	180
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	2 cut(s)	469, 484
CviAII	CATG	2 cut(s)	51, 400
CviQI	GTAC	2 cut(s)	469, 484
DdeI	CTNAG	3 cut(s)	164, 335, 609
DpnI	GATC	2 cut(s)	500, 548
DpnII	GATC	2 cut(s)	498, 546
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	2 cut(s)	3, 568
EagI	CGGCCG	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
EciI	GGCGGA	4 cut(s)	291, 300, 508, 520
EclXI	CGGCCG	1 cut(s)	568
Eco147I	AGGCCT	1 cut(s)	710
Eco47I	GGWCC	2 cut(s)	184, 646
Eco52I	CGGCCG	1 cut(s)	568
Eco57I	CTGAAG	2 cut(s)	92, 275
Eco72I	CACGTG	1 cut(s)	466
Eco81I	CCTNAGG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	724
Esp3I	CGTCTC	1 cut(s)	532
FaeI	CATG	2 cut(s)	54, 403
FaiI	YATR	6 cut(s)	52, 387, 393, 401, 437, 768
FatI	CATG	2 cut(s)	50, 399
FauI	CCCGC	2 cut(s)	146, 375
FokI	GGATG	2 cut(s)	83, 116
GlaI	GCGC	1 cut(s)	376
GsaI	CCCAGC	1 cut(s)	208
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	6 cut(s)	5, 197, 212, 224, 570, 710
HapII	CCGG	7 cut(s)	181, 194, 221, 554, 633, 663, 679
HgaI	GACGC	1 cut(s)	438
HhaI	GCGC	1 cut(s)	377
Hin1II	CATG	2 cut(s)	54, 403
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HincII	GTYRAC	2 cut(s)	511, 595
HindII	GTYRAC	2 cut(s)	511, 595
HindIII	AAGCTT	1 cut(s)	730
HpaI	GTTAAC	1 cut(s)	595
HpaII	CCGG	7 cut(s)	181, 194, 221, 554, 633, 663, 679
HphI	GGTGA	3 cut(s)	136, 270, 685
Hpy166II	GTNNAC	4 cut(s)	469, 511, 577, 595
Hpy188I	TCNGA	5 cut(s)	160, 336, 480, 539, 625
Hpy8I	GTNNAC	4 cut(s)	469, 511, 577, 595
Hpy99I	CGWCG	6 cut(s)	44, 325, 454, 484, 539, 701
HpyAV	CCTTC	3 cut(s)	144, 659, 750
HpyCH4III	ACNGT	3 cut(s)	508, 526, 583
HpyCH4IV	ACGT	4 cut(s)	39, 465, 482, 690
HpyCH4V	TGCA	3 cut(s)	105, 174, 600
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 272, 310, 672
HpyF3I	CTNAG	3 cut(s)	164, 335, 609
HpySE526I	ACGT	4 cut(s)	39, 465, 482, 690
Hsp92II	CATG	2 cut(s)	54, 403
HspAI	GCGC	1 cut(s)	375
KspAI	GTTAAC	1 cut(s)	595
Kzo9I	GATC	2 cut(s)	498, 546
LmnI	GCTCC	1 cut(s)	404
Lsp1109I	GCAGC	4 cut(s)	63, 66, 253, 256
LweI	GCATC	3 cut(s)	54, 183, 226
MaeII	ACGT	4 cut(s)	39, 465, 482, 690
MaeIII	GTNAC	2 cut(s)	244, 691
MalI	GATC	2 cut(s)	500, 548
MboI	GATC	2 cut(s)	498, 546
MboII	GAAGA	3 cut(s)	35, 40, 739
MflI	RGATCY	2 cut(s)	498, 546
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	619, 682
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	4 cut(s)	183, 503, 517, 648
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	594, 618, 734
MslI	CAYNNNNRTG	1 cut(s)	584
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	7 cut(s)	181, 194, 221, 554, 633, 663, 679
MspR9I	CCNGG	4 cut(s)	181, 182, 221, 726
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	726
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	4 cut(s)	76, 272, 310, 672
NciI	CCSGG	3 cut(s)	181, 182, 221
NdeII	GATC	2 cut(s)	498, 546
NlaIII	CATG	2 cut(s)	54, 403
NlaIV	GGNNCC	2 cut(s)	185, 500
NmeAIII	GCCGAG	2 cut(s)	91, 596
NmuCI	GTSAC	2 cut(s)	244, 691
OliI	CACNNNNGTG	1 cut(s)	584
PceI	AGGCCT	1 cut(s)	710
PcsI	WCGNNNNNNNCGW	1 cut(s)	696
PctI	GAATGC	1 cut(s)	494
Pfl23II	CGTACG	1 cut(s)	483
PmaCI	CACGTG	1 cut(s)	466
PmlI	CACGTG	1 cut(s)	466
Ppu21I	YACGTR	1 cut(s)	466
PpuMI	RGGWCCY	1 cut(s)	184
Psp5II	RGGWCCY	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	724
PspCI	CACGTG	1 cut(s)	466
PspFI	CCCAGC	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	724
PspLI	CGTACG	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	185, 500
PspPI	GGNCC	5 cut(s)	184, 196, 211, 223, 646
PspPPI	RGGWCCY	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	2 cut(s)	498, 546
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	2 cut(s)	470, 485
RsaNI	GTAC	2 cut(s)	469, 484
RseI	CAYNNNNRTG	1 cut(s)	584
SaqAI	TTAA	3 cut(s)	594, 618, 734
Sau3AI	GATC	2 cut(s)	498, 546
Sau96I	GGNCC	5 cut(s)	184, 196, 211, 223, 646
ScrFI	CCNGG	4 cut(s)	181, 182, 221, 726
SfaNI	GCATC	3 cut(s)	54, 183, 226
SgrAI	CRCCGGYG	1 cut(s)	662
SinI	GGWCC	2 cut(s)	184, 646
SmaI	CCCGGG	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	584
Sse9I	AATT	2 cut(s)	619, 682
SseBI	AGGCCT	1 cut(s)	710
StuI	AGGCCT	1 cut(s)	710
StyD4I	CCNGG	4 cut(s)	179, 180, 219, 724
TaaI	ACNGT	3 cut(s)	508, 526, 583
TaiI	ACGT	4 cut(s)	42, 468, 485, 693
TaqI	TCGA	2 cut(s)	452, 705
TasI	AATT	2 cut(s)	619, 682
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	9 cut(s)	275, 316, 319, 380, 383, 639, 669, 672, 675
Tru1I	TTAA	3 cut(s)	594, 618, 734
Tru9I	TTAA	3 cut(s)	594, 618, 734
TscAI	CASTG	1 cut(s)	500
TseFI	GTSAC	2 cut(s)	244, 691
TseI	GCWGC	4 cut(s)	76, 79, 266, 269
Tsp45I	GTSAC	2 cut(s)	244, 691
TspDTI	ATGAA	2 cut(s)	118, 437
TspGWI	ACGGA	3 cut(s)	338, 357, 731
TspMI	CCCGGG	1 cut(s)	180
TspRI	CASTG	1 cut(s)	500
VpaK11BI	GGWCC	2 cut(s)	184, 646
XapI	RAATTY	1 cut(s)	682
XmaI	CCCGGG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.