AT5G45790

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0019577
Physical Location & Seq
Forward (+)
18572301 .. 18574011
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45790.1

Sequence Viewer

Length: 1065 bp
ATGCCCACTTTACTTCTACAATCAACGAAGATGGTTAAAGCCTGTAGATTCAGCACAAACAAGCTTATGTCTAGATGGAAGAATCTCGTTGGTTTGAATGTAAATGTTGGAGCTTTTATCGGTAAGTATCCTCATGCTTTTGAGATCTTTACACATCCTTTTAGTAAGAATCTTTGTTGTAAGATTACTGAGAAGTTTAAGGTATTGATTGATGAGGAAGAGAATGTTGTTAGAGAGTGTGAGGTTGATGCTGTGAAGAGGGTAAAGAAGTTGTTGTTGTTGTCGAAACACGGTGTTCTTCGTGTACATGCTTTGAGGTTGATTAGAAAGGAATTGGGTTTGCCTGAGGATTTTCGAGATTCTATTTTAGCTAAGTATAGTTCAGAGTTCAGGTTAGTTGATTTGGAGACTTTAGAGTTAGTTGATAGAGATGATGAGAGTTTGTGTGTGGCAAAAGTTGAGGAGTGGAGAGAAGTTGAATATAGAGAGAAATGGTTAAGTAAGTTTGAGACGAATTACGCGTTTCCTATTCATCTTCCTACAGGGTTCAAGATTGAGAAAGGGTTTAGAGAAGAGTTAAAGAATTGGCAAAGGGTTCCTTATGTGAAGCCTTATGATAGAAAGGAGATTTCTCGAGGGTTAGAGCGATTCGAGAAGCGTGTTGTTGCAGTTATCCATGAGCTTCTGAGCTTAACGGTAGAGAAAATGGTTGAAGTTGAGAGATTAGCTCATTTTCGAAAGGATCTTGGTATTGAAGTAAACGTGAGGGAAGTTATATTGAAACATCCCGGGATTTTCTATGTGTCGACGAAAGGAAGTAGTCAGACTTTGTTTCTAAGAGAAGCTTATAGCAAAGGGTGTTTGATTGAGCCGAACCCGATATACAATGTGAGGAGGAAAATGCTTGATCTTGTGTTGTTGAAAACGCGTTATTCGAGAATGTTGTTACAAAGGGAAGATGAAACTCATAGAGAAGAGAAGAGTAGAGATGTTTTGATTAGCTCTAATGAAGATTGGGAAGGAGGGAGAGATGGAGATTGGGTCTTACCAATTTTGGGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

354

Amino Acids

41.64

Weight (kDa)

9.01

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 19 - 308 2.1e-102 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45790 AT5G45790
malus_domestica MD02G1242700.v1.1 MD07G1073900.v1.1
prunus_persica Prupe.2G091800_v2.0.a1
pyrus_communis pycom02g20950 pycom07g05800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 806
AccII CGCG 2 cut(s) 521, 928
AclWI GGATC 1 cut(s) 750
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 1055
AflIII ACRYGT 2 cut(s) 519, 926
AgsI TTSAA 7 cut(s) 97, 479, 550, 713, 755, 781, 922
AluBI AGCT 8 cut(s) 64, 113, 371, 682, 690, 728, 845, 1002
AluI AGCT 8 cut(s) 64, 113, 371, 682, 690, 728, 845, 1002
Alw26I GTCTC 2 cut(s) 401, 503
AlwI GGATC 1 cut(s) 750
Ama87I CYCGRG 2 cut(s) 633, 788
AsuC2I CCSGG 2 cut(s) 789, 790
AsuII TTCGAA 1 cut(s) 736
AvaI CYCGRG 2 cut(s) 633, 788
AxyI CCTNAGG 1 cut(s) 345
BccI CCATC 3 cut(s) 25, 69, 1025
BciVI GTATCC 1 cut(s) 138
BcnI CCSGG 2 cut(s) 789, 790
BcoDI GTCTC 2 cut(s) 401, 503
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 2 cut(s) 43, 540
BfuI GTATCC 1 cut(s) 138
BglII AGATCT 1 cut(s) 144
Bme1390I CCNGG 2 cut(s) 789, 790
BmeT110I CYCGRG 2 cut(s) 633, 788
BmiI GGNNCC 1 cut(s) 597
BmrFI CCNGG 2 cut(s) 789, 790
BmsI GCATC 1 cut(s) 238
BplI GAGNNNNNCTC 2 cut(s) 712, 744
Bpu14I TTCGAA 1 cut(s) 736
BpuMI CCSGG 2 cut(s) 789, 790
BsaJI CCNNGG 1 cut(s) 788
BsaXI ACNNNNNCTCC 2 cut(s) 1026, 1056
Bsc4I CCNNNNNNNGG 1 cut(s) 1055
Bse21I CCTNAGG 1 cut(s) 345
BseDI CCNNGG 1 cut(s) 788
BseGI GGATG 2 cut(s) 154, 784
BseLI CCNNNNNNNGG 1 cut(s) 1055
BseMII CTCAG 3 cut(s) 180, 336, 677
BseRI GAGGAG 2 cut(s) 476, 907
Bsh1236I CGCG 2 cut(s) 521, 928
BsiHKCI CYCGRG 2 cut(s) 633, 788
BsiSI CCGG 1 cut(s) 789
BslI CCNNNNNNNGG 1 cut(s) 1055
BsmAI GTCTC 2 cut(s) 401, 503
BsmBI CGTCTC 1 cut(s) 503
BsoBI CYCGRG 2 cut(s) 633, 788
Bsp119I TTCGAA 1 cut(s) 736
Bsp1407I TGTACA 1 cut(s) 304
Bsp143I GATC 3 cut(s) 144, 742, 907
BspCNI CTCAG 3 cut(s) 181, 337, 678
BspFNI CGCG 2 cut(s) 521, 928
BspLI GGNNCC 1 cut(s) 597
BspPI GGATC 1 cut(s) 750
BspT104I TTCGAA 1 cut(s) 736
BsrGI TGTACA 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 788
BssMI GATC 3 cut(s) 144, 742, 907
Bst4CI ACNGT 2 cut(s) 293, 697
Bst6I CTCTTC 5 cut(s) 213, 251, 567, 969, 974
BstAUI TGTACA 1 cut(s) 304
BstBI TTCGAA 1 cut(s) 736
BstDEI CTNAG 5 cut(s) 189, 345, 372, 686, 836
BstF5I GGATG 2 cut(s) 154, 784
BstFNI CGCG 2 cut(s) 521, 928
BstKTI GATC 3 cut(s) 147, 745, 910
BstMAI GTCTC 2 cut(s) 401, 503
BstMBI GATC 3 cut(s) 144, 742, 907
BstNSI RCATGY 1 cut(s) 311
BstSCI CCNGG 2 cut(s) 787, 788
BstSFI CTRYAG 2 cut(s) 43, 540
BstUI CGCG 2 cut(s) 521, 928
BstX2I RGATCY 2 cut(s) 144, 742
BstYI RGATCY 2 cut(s) 144, 742
Bsu36I CCTNAGG 1 cut(s) 345
BsuI GTATCC 1 cut(s) 138
BtsCI GGATG 2 cut(s) 154, 784
Cfr9I CCCGGG 1 cut(s) 788
Csp6I GTAC 1 cut(s) 305
CviAII CATG 3 cut(s) 134, 308, 677
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 5 cut(s) 189, 345, 372, 686, 836
DpnI GATC 3 cut(s) 146, 744, 909
DpnII GATC 3 cut(s) 144, 742, 907
Eam1104I CTCTTC 5 cut(s) 213, 251, 567, 969, 974
EarI CTCTTC 5 cut(s) 213, 251, 567, 969, 974
Eco81I CCTNAGG 1 cut(s) 345
Eco88I CYCGRG 2 cut(s) 633, 788
Esp3I CGTCTC 1 cut(s) 503
FaeI CATG 3 cut(s) 137, 311, 680
FalI AAGNNNNNCTT 4 cut(s) 583, 615, 829, 861
FatI CATG 3 cut(s) 133, 307, 676
FblI GTMKAC 1 cut(s) 806
FokI GGATG 2 cut(s) 141, 771
FspBI CTAG 1 cut(s) 72
HapII CCGG 1 cut(s) 789
Hin1II CATG 3 cut(s) 137, 311, 680
HincII GTYRAC 1 cut(s) 807
HindII GTYRAC 1 cut(s) 807
HindIII AAGCTT 2 cut(s) 62, 843
HinfI GANTC 5 cut(s) 48, 82, 169, 359, 648
HpaII CCGG 1 cut(s) 789
Hpy166II GTNNAC 3 cut(s) 305, 760, 807
Hpy188I TCNGA 3 cut(s) 385, 687, 825
Hpy188III TCNNGA 6 cut(s) 72, 356, 550, 633, 652, 936
Hpy8I GTNNAC 3 cut(s) 305, 760, 807
Hpy99I CGWCG 1 cut(s) 811
HpyAV CCTTC 1 cut(s) 1013
HpyCH4III ACNGT 2 cut(s) 293, 697
HpyCH4IV ACGT 1 cut(s) 762
HpyCH4V TGCA 1 cut(s) 668
HpyF3I CTNAG 5 cut(s) 189, 345, 372, 686, 836
HpySE526I ACGT 1 cut(s) 762
Hsp92II CATG 3 cut(s) 137, 311, 680
Kzo9I GATC 3 cut(s) 144, 742, 907
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 5 cut(s) 55, 357, 376, 528, 802
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 72
MaeII ACGT 1 cut(s) 762
MaeIII GTNAC 1 cut(s) 945
MalI GATC 3 cut(s) 146, 744, 909
MboI GATC 3 cut(s) 144, 742, 907
MflI RGATCY 2 cut(s) 144, 742
MluCI AATT 4 cut(s) 332, 514, 583, 1050
MluI ACGCGT 2 cut(s) 519, 926
MmeI TCCRAC 1 cut(s) 88
MseI TTAA 5 cut(s) 36, 198, 497, 578, 692
MspI CCGG 1 cut(s) 789
MspR9I CCNGG 2 cut(s) 789, 790
MvnI CGCG 2 cut(s) 521, 928
NciI CCSGG 2 cut(s) 789, 790
NdeII GATC 3 cut(s) 144, 742, 907
NlaIII CATG 3 cut(s) 137, 311, 680
NlaIV GGNNCC 1 cut(s) 597
NspI RCATGY 1 cut(s) 311
NspV TTCGAA 1 cut(s) 736
PaeR7I CTCGAG 1 cut(s) 633
PcsI WCGNNNNNNNCGW 2 cut(s) 518, 932
PfeI GAWTC 5 cut(s) 48, 82, 169, 359, 648
PspN4I GGNNCC 1 cut(s) 597
PsrI GAACNNNNNNTAC 2 cut(s) 866, 898
PsuI RGATCY 2 cut(s) 144, 742
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SalI GTCGAC 1 cut(s) 805
SaqAI TTAA 5 cut(s) 36, 198, 497, 578, 692
Sau3AI GATC 3 cut(s) 144, 742, 907
ScrFI CCNGG 2 cut(s) 789, 790
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 2 cut(s) 43, 540
Sfr274I CTCGAG 1 cut(s) 633
SfuI TTCGAA 1 cut(s) 736
SlaI CTCGAG 1 cut(s) 633
SmaI CCCGGG 1 cut(s) 790
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
Sse9I AATT 4 cut(s) 332, 514, 583, 1050
SspMI CTAG 1 cut(s) 72
StyD4I CCNGG 2 cut(s) 787, 788
TaaI ACNGT 2 cut(s) 293, 697
TaiI ACGT 1 cut(s) 765
TaqI TCGA 7 cut(s) 284, 355, 634, 651, 736, 806, 935
TasI AATT 4 cut(s) 332, 514, 583, 1050
TatI WGTACW 1 cut(s) 304
TfiI GAWTC 5 cut(s) 48, 82, 169, 359, 648
Tru1I TTAA 5 cut(s) 36, 198, 497, 578, 692
Tru9I TTAA 5 cut(s) 36, 198, 497, 578, 692
TspDTI ATGAA 3 cut(s) 521, 975, 1023
TspMI CCCGGG 1 cut(s) 788
XbaI TCTAGA 1 cut(s) 71
XceI RCATGY 1 cut(s) 311
XhoI CTCGAG 1 cut(s) 633
XmaI CCCGGG 1 cut(s) 788
XmiI GTMKAC 1 cut(s) 806
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.