Prupe.2G091800_v2.0.a1

protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0019577
Physical Location & Seq
Reverse (-)
14475129 .. 14476391
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G091800.1

Sequence Viewer

Length: 1263 bp
ATGAGGCTGTTAGAAAGCTCCAAATTCAGCCTCTTCAAATTCAAAGCTTGCTCATTAAGCTCACAAGTGACCCCGTTTGGCCCCTTCAATTCATTTGTGCAAAAGAGGTGGAGAAAGCCTATAATTTCCGCCCAAACACGCTTAGAAGATCGAACCAGGGACTCAAACCTAGACAAGCTCACAACCCACCTCAAGAAACTCGATATCATCTTAAAACTCCATGTCCTCGTGTCCAGTCGGAAGCGCGGACCATTTGTGTCCTTACAGCTAATGTCCCGATGGAGGAACCTCGTGGGGCTTAATGTCGGCATTGGCGCCTTTGTTCACAAATACCCACATGTTTTTGAGGTGTTTACACATCCGGTACGGCGCAATTTGTGTTGTAGGATAAGCAAGAAAATGATGGGTTTAATAGAGGAAGAAGCAGATGCTATGAAACAATTGGAGCTGGAAGTTGTCCGTCGGGTAAAGAAGTTATTGATGATGTCTGTGAGTGGCACTCTTCATCTCCATGCTTTGAGGTTGGTTAGGAGAGAATTGGGGTTGCCTGTGGATTTCAGGGAATCCATTCTTGGTAAATATTCGAAGGATTTTAAGTTGGTTGATTTAGAGGTTGTAGAATTGATTAGTAGAGATGAAAATTTGGAAGTGGCTGAAATTGAGAAATGGAGAGAGAAGGAATTTAGAGAGAAGTGGTTGAGTGAGTTCGAGACAAAGTATGCATTCCCGATCAATTTCCCAACGGGGTTTGAGATCCAGGCTGGGTTTAGAGATAAGTTGAAGAATTGGCAAAGACTTCCTTATGTGAAGCCTTATGACAGGAAAGAGTCTGTCCGCATTCGTACTTGTGGAGGGATTGAGAGGTATGAGAAACGGGCGGTTGGTATTCTTCATGAGTTCTTGAGTTTGACAACAGAGAAGATGGTTGAGGTTGAAAGGTTAGCTCATTTTCGGAGGGATTTCGCTATGGATGTTAATGTGCGTGAGCTTATCTTGAAGCACCCTGGAATTTTTTACATATCAACCAGACGTAATAGTTTAACTGTTTTTCTTAGAGAGGCATATAGTAAAGGGTGCCTCATTCAGTCTAATCAGATATATGATGTTCGGAGGAAAATGTTGGACCTTGTTTTCCTAGGGAGTCGAAATACTAGAGAAATGCCAGCTCAAAAGGAAATCAAGGAGTTCAAAGTAGATGGGGATGGTATAATGGATGGAGACTGGGTTATCCCAATGTTAGAGAACTTGGAGAATGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

421

Amino Acids

49.36

Weight (kDa)

9.7

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45790 AT5G45790
malus_domestica MD02G1242700.v1.1 MD07G1073900.v1.1
prunus_persica Prupe.2G091800_v2.0.a1
pyrus_communis pycom02g20950 pycom07g05800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 314, 1074
AccII CGCG 1 cut(s) 246
AciI CCGC 4 cut(s) 129, 246, 835, 878
AclWI GGATC 1 cut(s) 748
AcsI RAATTY 5 cut(s) 23, 38, 640, 680, 1008
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 2 cut(s) 366, 844
AfiI CCNNNNNNNGG 1 cut(s) 282
AflIII ACRYGT 1 cut(s) 337
AgsI TTSAA 7 cut(s) 37, 43, 88, 781, 935, 997, 1189
AjnI CCWGG 3 cut(s) 155, 756, 1003
AjuI GAANNNNNNNTTGG 2 cut(s) 555, 587
AluBI AGCT 9 cut(s) 18, 47, 60, 178, 268, 448, 944, 988, 1166
AluI AGCT 9 cut(s) 18, 47, 60, 178, 268, 448, 944, 988, 1166
Alw26I GTCTC 2 cut(s) 704, 1212
AlwI GGATC 1 cut(s) 748
AoxI GGCC 1 cut(s) 79
ApoI RAATTY 5 cut(s) 23, 38, 640, 680, 1008
Asp700I GAANNNNTTC 1 cut(s) 567
AspA2I CCTAGG 1 cut(s) 1135
AspLEI GCGC 3 cut(s) 246, 317, 372
AspS9I GGNCC 3 cut(s) 80, 248, 1123
AsuII TTCGAA 1 cut(s) 584
AvaII GGWCC 2 cut(s) 248, 1123
AvrII CCTAGG 1 cut(s) 1135
BanI GGYRCC 2 cut(s) 314, 1074
BauI CACGAG 2 cut(s) 227, 290
BccI CCATC 6 cut(s) 273, 397, 916, 1190, 1196, 1208
BceAI ACGGC 1 cut(s) 383
BciT130I CCWGG 3 cut(s) 157, 758, 1005
BcoDI GTCTC 2 cut(s) 704, 1212
BfaI CTAG 3 cut(s) 170, 1136, 1152
BfoI RGCGCY 1 cut(s) 318
BlnI CCTAGG 1 cut(s) 1135
Bme1390I CCNGG 3 cut(s) 157, 758, 1005
Bme18I GGWCC 2 cut(s) 248, 1123
BmgT120I GGNCC 3 cut(s) 80, 248, 1123
BmiI GGNNCC 4 cut(s) 82, 287, 316, 1076
BmrFI CCNGG 3 cut(s) 157, 758, 1005
BmrI ACTGGG 1 cut(s) 1231
BmsI GCATC 1 cut(s) 418
BmuI ACTGGG 1 cut(s) 1231
BplI GAGNNNNNCTC 2 cut(s) 484, 516
Bpu14I TTCGAA 1 cut(s) 584
BpuEI CTTGAG 2 cut(s) 176, 922
BsaHI GRCGYC 1 cut(s) 315
BsaJI CCNNGG 3 cut(s) 156, 1003, 1135
BsaWI WCCGGW 1 cut(s) 361
BsaXI ACNNNNNCTCC 2 cut(s) 1209, 1239
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse1I ACTGG 2 cut(s) 234, 1226
BseBI CCWGG 3 cut(s) 157, 758, 1005
BseDI CCNNGG 3 cut(s) 156, 1003, 1135
BseGI GGATG 4 cut(s) 358, 976, 1207, 1219
BseLI CCNNNNNNNGG 1 cut(s) 282
BseNI ACTGG 2 cut(s) 234, 1226
BseYI CCCAGC 1 cut(s) 761
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 1 cut(s) 81
BshNI GGYRCC 2 cut(s) 314, 1074
BsiSI CCGG 1 cut(s) 362
BslFI GGGAC 2 cut(s) 173, 259
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 2 cut(s) 704, 1212
BsmFI GGGAC 2 cut(s) 173, 259
BsmI GAATGC 2 cut(s) 722, 837
BsnI GGCC 1 cut(s) 81
Bsp119I TTCGAA 1 cut(s) 584
Bsp143I GATC 3 cut(s) 148, 729, 753
BspACI CCGC 4 cut(s) 129, 246, 835, 878
BspANI GGCC 1 cut(s) 81
BspFNI CGCG 1 cut(s) 246
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 4 cut(s) 82, 287, 316, 1076
BspPI GGATC 1 cut(s) 748
BspT104I TTCGAA 1 cut(s) 584
BspT107I GGYRCC 2 cut(s) 314, 1074
BsrI ACTGG 2 cut(s) 234, 1226
BssECI CCNNGG 3 cut(s) 156, 1003, 1135
BssMI GATC 3 cut(s) 148, 729, 753
BssNI GRCGYC 1 cut(s) 315
BssSI CACGAG 2 cut(s) 227, 290
BssT1I CCWWGG 1 cut(s) 1135
Bst2BI CACGAG 2 cut(s) 227, 290
Bst2UI CCWGG 3 cut(s) 157, 758, 1005
Bst4CI ACNGT 1 cut(s) 1045
Bst6I CTCTTC 2 cut(s) 38, 507
BstACI GRCGYC 1 cut(s) 315
BstBI TTCGAA 1 cut(s) 584
BstC8I GCNNGC 2 cut(s) 49, 1164
BstDEI CTNAG 2 cut(s) 142, 1052
BstF5I GGATG 4 cut(s) 358, 976, 1207, 1219
BstFNI CGCG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 3 cut(s) 246, 317, 372
BstKTI GATC 3 cut(s) 151, 732, 756
BstMAI GTCTC 2 cut(s) 704, 1212
BstMBI GATC 3 cut(s) 148, 729, 753
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstNI CCWGG 3 cut(s) 157, 758, 1005
BstNSI RCATGY 1 cut(s) 341
BstSCI CCNGG 3 cut(s) 155, 756, 1003
BstUI CGCG 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 753
BstYI RGATCY 1 cut(s) 753
BsuRI GGCC 1 cut(s) 81
BtsCI GGATG 4 cut(s) 358, 976, 1207, 1219
Cac8I GCNNGC 2 cut(s) 49, 1164
CciI TCATGA 1 cut(s) 892
CfoI GCGC 3 cut(s) 246, 317, 372
Cfr13I GGNCC 3 cut(s) 80, 248, 1123
Csp6I GTAC 2 cut(s) 365, 843
CspCI CAANNNNNGTGG 2 cut(s) 89, 124
CviAII CATG 4 cut(s) 221, 338, 512, 893
CviQI GTAC 2 cut(s) 365, 843
DdeI CTNAG 2 cut(s) 142, 1052
DinI GGCGCC 1 cut(s) 316
DpnI GATC 3 cut(s) 150, 731, 755
DpnII GATC 3 cut(s) 148, 729, 753
Eam1104I CTCTTC 2 cut(s) 38, 507
EarI CTCTTC 2 cut(s) 38, 507
EciI GGCGGA 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 1135
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 2 cut(s) 248, 1123
EcoRII CCWGG 3 cut(s) 155, 756, 1003
EcoRV GATATC 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 1135
EcoT22I ATGCAT 1 cut(s) 724
EgeI GGCGCC 1 cut(s) 316
EheI GGCGCC 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 1135
FaeI CATG 4 cut(s) 224, 341, 515, 896
FalI AAGNNNNNCTT 2 cut(s) 784, 816
FaqI GGGAC 2 cut(s) 173, 259
FatI CATG 4 cut(s) 220, 337, 511, 892
FokI GGATG 4 cut(s) 345, 983, 1214, 1226
FspBI CTAG 3 cut(s) 170, 1136, 1152
GlaI GCGC 3 cut(s) 245, 316, 371
GsaI CCCAGC 1 cut(s) 765
HaeII RGCGCY 1 cut(s) 318
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 362
HhaI GCGC 3 cut(s) 246, 317, 372
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 4 cut(s) 224, 341, 515, 896
Hin6I GCGC 3 cut(s) 244, 315, 370
HinP1I GCGC 3 cut(s) 244, 315, 370
HindIII AAGCTT 1 cut(s) 45
HinfI GANTC 4 cut(s) 161, 563, 827, 1141
HpaII CCGG 1 cut(s) 362
Hpy166II GTNNAC 2 cut(s) 325, 354
Hpy188I TCNGA 4 cut(s) 240, 954, 1095, 1110
Hpy188III TCNNGA 7 cut(s) 193, 276, 709, 727, 893, 901, 994
Hpy8I GTNNAC 2 cut(s) 325, 354
Hpy99I CGWCG 1 cut(s) 465
HpyAV CCTTC 3 cut(s) 94, 580, 670
HpyCH4III ACNGT 1 cut(s) 1045
HpyCH4IV ACGT 1 cut(s) 1030
HpyCH4V TGCA 2 cut(s) 100, 722
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
HpyF3I CTNAG 2 cut(s) 142, 1052
HpySE526I ACGT 1 cut(s) 1030
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 4 cut(s) 224, 341, 515, 896
HspAI GCGC 3 cut(s) 244, 315, 370
KasI GGCGCC 1 cut(s) 314
Kzo9I GATC 3 cut(s) 148, 729, 753
LmnI GCTCC 2 cut(s) 23, 445
LweI GCATC 1 cut(s) 418
MaeI CTAG 3 cut(s) 170, 1136, 1152
MaeII ACGT 1 cut(s) 1030
MaeIII GTNAC 1 cut(s) 67
MalI GATC 3 cut(s) 150, 731, 755
MboI GATC 3 cut(s) 148, 729, 753
MboII GAAGA 7 cut(s) 25, 158, 431, 494, 793, 881, 931
MfeI CAATTG 1 cut(s) 440
MflI RGATCY 1 cut(s) 753
Mly113I GGCGCC 1 cut(s) 315
MlyI GAGTC 3 cut(s) 155, 836, 1150
MmeI TCCRAC 2 cut(s) 218, 1101
Mph1103I ATGCAT 1 cut(s) 724
MroXI GAANNNNTTC 1 cut(s) 567
MseI TTAA 7 cut(s) 56, 212, 300, 410, 594, 975, 1040
MslI CAYNNNNRTG 1 cut(s) 510
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 3 cut(s) 157, 758, 1005
MunI CAATTG 1 cut(s) 440
Mva1269I GAATGC 2 cut(s) 722, 837
MvaI CCWGG 3 cut(s) 157, 758, 1005
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 57
NarI GGCGCC 1 cut(s) 315
NdeII GATC 3 cut(s) 148, 729, 753
NlaIII CATG 4 cut(s) 224, 341, 515, 896
NlaIV GGNNCC 4 cut(s) 82, 287, 316, 1076
NmuCI GTSAC 1 cut(s) 67
NsiI ATGCAT 1 cut(s) 724
NspI RCATGY 1 cut(s) 341
NspV TTCGAA 1 cut(s) 584
PagI TCATGA 1 cut(s) 892
PciI ACATGT 1 cut(s) 337
PctI GAATGC 2 cut(s) 722, 837
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 1 cut(s) 563
PleI GAGTC 3 cut(s) 155, 835, 1149
PluTI GGCGCC 1 cut(s) 318
PpsI GAGTC 3 cut(s) 155, 835, 1149
PscI ACATGT 1 cut(s) 337
Psp6I CCWGG 3 cut(s) 155, 756, 1003
PspFI CCCAGC 1 cut(s) 761
PspGI CCWGG 3 cut(s) 155, 756, 1003
PspN4I GGNNCC 4 cut(s) 82, 287, 316, 1076
PspPI GGNCC 3 cut(s) 80, 248, 1123
PsuI RGATCY 1 cut(s) 753
RsaI GTAC 2 cut(s) 366, 844
RsaNI GTAC 2 cut(s) 365, 843
RseI CAYNNNNRTG 1 cut(s) 510
SaqAI TTAA 7 cut(s) 56, 212, 300, 410, 594, 975, 1040
Sau3AI GATC 3 cut(s) 148, 729, 753
Sau96I GGNCC 3 cut(s) 80, 248, 1123
SchI GAGTC 3 cut(s) 155, 836, 1150
ScrFI CCNGG 3 cut(s) 157, 758, 1005
SfaNI GCATC 1 cut(s) 418
SfoI GGCGCC 1 cut(s) 316
SfuI TTCGAA 1 cut(s) 584
SinI GGWCC 2 cut(s) 248, 1123
SmiMI CAYNNNNRTG 1 cut(s) 510
SmlI CTYRAG 2 cut(s) 191, 901
SmoI CTYRAG 2 cut(s) 191, 901
SsiI CCGC 4 cut(s) 129, 246, 835, 878
SspDI GGCGCC 1 cut(s) 314
SspI AATATT 1 cut(s) 581
SspMI CTAG 3 cut(s) 170, 1136, 1152
StyD4I CCNGG 3 cut(s) 155, 756, 1003
StyI CCWWGG 1 cut(s) 1135
TaaI ACNGT 1 cut(s) 1045
TaiI ACGT 1 cut(s) 1033
TaqI TCGA 5 cut(s) 151, 201, 584, 708, 1144
TfiI GAWTC 1 cut(s) 563
Tru1I TTAA 7 cut(s) 56, 212, 300, 410, 594, 975, 1040
Tru9I TTAA 7 cut(s) 56, 212, 300, 410, 594, 975, 1040
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 5 cut(s) 81, 449, 494, 651, 881
TspGWI ACGGA 1 cut(s) 449
VpaK11BI GGWCC 2 cut(s) 248, 1123
XapI RAATTY 5 cut(s) 23, 38, 640, 680, 1008
XceI RCATGY 1 cut(s) 341
XmaJI CCTAGG 1 cut(s) 1135
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 3 cut(s) 170, 1136, 1152
Zsp2I ATGCAT 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.