AT5G45890

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
18613239 .. 18614963
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45890.1

Sequence Viewer

Length: 1041 bp
ATGGCTTTAAAACATATGCAAATCTTTCTCTTCGTCGCTATATTTTCATCATTCTGTTTCTCCATCACTCTTTCTCGTCCACTCGACAATGAACTCATCATGCAAAAGAGGCACATCGAGTGGATGACTAAACACGGCCGTGTCTACGCGGATGTGAAGGAGGAAAACAATCGCTACGTTGTGTTCAAAAACAACGTCGAACGCATTGAACATTTAAATAGCATTCCTGCCGGAAGAACTTTCAAACTTGCGGTAAATCAGTTTGCTGATTTAACCAATGACGAATTTCGTTCCATGTACACTGGTTTCAAAGGTGTCTCGGCATTATCTAGCCAAAGCCAAACTAAAATGTCGCCGTTTAGGTACCAAAACGTTTCTTCTGGTGCTTTGCCGGTTTCTGTTGACTGGAGGAAGAAAGGAGCTGTGACCCCTATCAAGAATCAAGGCAGCTGCGGATGTTGTTGGGCGTTTTCAGCGGTTGCGGCTATTGAAGGAGCAACACAAATAAAGAAAGGGAAACTTATATCTTTGTCAGAACAACAGCTTGTTGATTGCGACACAAACGATTTTGGCTGCGAAGGCGGTTTAATGGATACTGCGTTTGAGCATATAAAAGCGACTGGCGGCTTGACAACTGAGTCAAATTATCCTTACAAAGGCGAAGACGCTACTTGCAATTCCAAAAAGACCAATCCAAAAGCAACTTCTATTACAGGTTATGAGGATGTCCCGGTTAATGATGAGCAAGCACTGATGAAGGCAGTGGCACACCAACCGGTTAGCGTTGGAATTGAAGGAGGTGGTTTTGATTTCCAATTCTATTCGTCTGGTGTGTTCACTGGAGAGTGCACTACGTATCTTGATCATGCAGTAACTGCGATTGGATACGGCGAATCTACTAACGGATCAAAGTATTGGATCATCAAGAATTCATGGGGAACAAAATGGGGAGAAAGTGGATATATGAGGATTCAAAAAGATGTCAAGGATAAACAAGGACTATGTGGTCTTGCCATGAAAGCTTCTTACCCAACTATATGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

346

Amino Acids

38.23

Weight (kDa)

7.98

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 39 - 96 1.1e-16 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 130 - 345 8e-83 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45890
fragaria_vesca FvH4_5g18400
prunus_persica Prupe.4G059800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0010481
rosa_laevigata RLG00000031756
rosa_multiflora Rmu_sc0009313.1_g000001
rosa_roxburghii Rroxscaffold_1G00065840
rosa_rugosa Rorug04G0450600
rosa_samantha Rh5AG082000 Rh5BG077200
rosa_wichuraiana Rw0G000770 Rw0G021920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 637, 1005
Acc65I GGTACC 1 cut(s) 363
AccB1I GGYRCC 1 cut(s) 363
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 149
AciI CCGC 7 cut(s) 149, 251, 453, 476, 482, 582, 624
AclI AACGTT 1 cut(s) 372
AclWI GGATC 2 cut(s) 913, 926
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 2 cut(s) 284, 928
AfaI GTAC 2 cut(s) 299, 365
AfiI CCNNNNNNNGG 1 cut(s) 656
AgeI ACCGGT 1 cut(s) 775
AgsI TTSAA 7 cut(s) 187, 209, 244, 310, 491, 794, 974
AjuI GAANNNNNNNTTGG 2 cut(s) 688, 720
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 4 cut(s) 422, 450, 544, 1022
AluI AGCT 4 cut(s) 422, 450, 544, 1022
Alw21I GWGCWC 1 cut(s) 851
Alw26I GTCTC 1 cut(s) 322
Alw44I GTGCAC 1 cut(s) 847
AlwI GGATC 2 cut(s) 913, 926
AlwNI CAGNNNCTG 1 cut(s) 875
AoxI GGCC 1 cut(s) 136
ApaLI GTGCAC 1 cut(s) 847
ApeKI GCWGC 3 cut(s) 447, 450, 573
ApoI RAATTY 2 cut(s) 284, 928
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
AsiGI ACCGGT 1 cut(s) 775
Asp718I GGTACC 1 cut(s) 363
AsuC2I CCSGG 1 cut(s) 731
BaeGI GKGCMC 1 cut(s) 851
BanI GGYRCC 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 851
BbvI GCAGC 3 cut(s) 437, 459, 560
BccI CCATC 1 cut(s) 71
BceAI ACGGC 4 cut(s) 123, 151, 340, 904
BciVI GTATCC 2 cut(s) 586, 878
BclI TGATCA 1 cut(s) 862
BcnI CCSGG 1 cut(s) 731
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 1 cut(s) 330
BfuI GTATCC 2 cut(s) 586, 878
BisI GCNGC 5 cut(s) 448, 451, 483, 574, 625
BlsI GCNGC 5 cut(s) 449, 452, 484, 575, 626
Bme1390I CCNGG 1 cut(s) 731
BmiI GGNNCC 1 cut(s) 365
BmrFI CCNGG 1 cut(s) 731
BpiI GAAGAC 1 cut(s) 669
BpmI CTGGAG 2 cut(s) 427, 861
BpuMI CCSGG 1 cut(s) 731
BsaAI YACGTR 1 cut(s) 855
BsaWI WCCGGW 1 cut(s) 775
Bsc4I CCNNNNNNNGG 1 cut(s) 656
Bse118I RCCGGY 2 cut(s) 391, 775
Bse1I ACTGG 4 cut(s) 307, 410, 625, 844
BseGI GGATG 4 cut(s) 129, 157, 461, 730
BseLI CCNNNNNNNGG 1 cut(s) 656
BseMII CTCAG 1 cut(s) 627
BseNI ACTGG 4 cut(s) 307, 410, 625, 844
BseSI GKGCMC 1 cut(s) 851
BseX3I CGGCCG 1 cut(s) 136
BseXI GCAGC 3 cut(s) 437, 459, 560
Bsh1236I CGCG 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 363
BshTI ACCGGT 1 cut(s) 775
BsiEI CGRYCG 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 851
BsiSI CCGG 4 cut(s) 231, 392, 731, 776
BslFI GGGAC 1 cut(s) 713
BslI CCNNNNNNNGG 1 cut(s) 656
BsmAI GTCTC 1 cut(s) 322
BsmFI GGGAC 1 cut(s) 713
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 851
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 3 cut(s) 862, 905, 918
BspACI CCGC 7 cut(s) 149, 251, 453, 476, 482, 582, 624
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 628
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 365
BspPI GGATC 2 cut(s) 913, 926
BspT107I GGYRCC 1 cut(s) 363
BsrFI RCCGGY 2 cut(s) 391, 775
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 4 cut(s) 307, 410, 625, 844
BssAI RCCGGY 2 cut(s) 391, 775
BssMI GATC 3 cut(s) 862, 905, 918
Bst6I CTCTTC 1 cut(s) 35
BstAPI GCANNNNNTGC 1 cut(s) 875
BstAUI TGTACA 1 cut(s) 297
BstBAI YACGTR 1 cut(s) 855
BstC8I GCNNGC 1 cut(s) 747
BstDEI CTNAG 1 cut(s) 636
BstENI CCTNNNNNAGG 1 cut(s) 654
BstF5I GGATG 4 cut(s) 129, 157, 461, 730
BstFNI CGCG 1 cut(s) 149
BstKTI GATC 3 cut(s) 865, 908, 921
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 3 cut(s) 862, 905, 918
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 6 cut(s) 109, 473, 482, 579, 875, 1019
BstSCI CCNGG 1 cut(s) 729
BstSLI GKGCMC 1 cut(s) 851
BstSNI TACGTA 1 cut(s) 855
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 3 cut(s) 437, 459, 560
BstV2I GAAGAC 1 cut(s) 669
BstZI CGGCCG 1 cut(s) 136
BsuI GTATCC 2 cut(s) 586, 878
BsuRI GGCC 1 cut(s) 138
BtsCI GGATG 4 cut(s) 129, 157, 461, 730
BtsI GCAGTG 1 cut(s) 768
BtsIMutI CAGTG 4 cut(s) 300, 749, 768, 837
Cac8I GCNNGC 1 cut(s) 747
CaiI CAGNNNCTG 1 cut(s) 875
Cfr10I RCCGGY 2 cut(s) 391, 775
CseI GACGC 1 cut(s) 674
Csp6I GTAC 2 cut(s) 298, 364
CspAI ACCGGT 1 cut(s) 775
CviAII CATG 5 cut(s) 100, 295, 866, 933, 1015
CviQI GTAC 2 cut(s) 298, 364
DdeI CTNAG 1 cut(s) 636
DpnI GATC 3 cut(s) 864, 907, 920
DpnII GATC 3 cut(s) 862, 905, 918
DraI TTTAAA 2 cut(s) 9, 216
DrdI GACNNNNNNGTC 2 cut(s) 637, 1005
DseDI GACNNNNNNGTC 2 cut(s) 637, 1005
EaeI YGGCCR 1 cut(s) 136
EagI CGGCCG 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
EclXI CGGCCG 1 cut(s) 136
Eco105I TACGTA 1 cut(s) 855
Eco52I CGGCCG 1 cut(s) 136
EcoNI CCTNNNNNAGG 1 cut(s) 654
EcoRI GAATTC 1 cut(s) 928
FaeI CATG 5 cut(s) 103, 298, 869, 936, 1018
FalI AAGNNNNNCTT 2 cut(s) 504, 536
FaqI GGGAC 1 cut(s) 713
FatI CATG 5 cut(s) 99, 294, 865, 932, 1014
FauNDI CATATG 1 cut(s) 15
FbaI TGATCA 1 cut(s) 862
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 5 cut(s) 448, 451, 483, 574, 625
FokI GGATG 4 cut(s) 136, 164, 468, 737
Fsp4HI GCNGC 5 cut(s) 448, 451, 483, 574, 625
FspBI CTAG 1 cut(s) 330
GluI GCNGC 5 cut(s) 448, 451, 483, 574, 625
GsuI CTGGAG 2 cut(s) 427, 861
HaeIII GGCC 1 cut(s) 138
HapII CCGG 4 cut(s) 231, 392, 731, 776
HgaI GACGC 1 cut(s) 674
Hin1II CATG 5 cut(s) 103, 298, 869, 936, 1018
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 1 cut(s) 1020
HinfI GANTC 4 cut(s) 439, 638, 893, 970
HpaII CCGG 4 cut(s) 231, 392, 731, 776
Hpy166II GTNNAC 6 cut(s) 80, 145, 300, 403, 837, 849
Hpy188I TCNGA 1 cut(s) 535
Hpy188III TCNNGA 3 cut(s) 436, 860, 925
Hpy8I GTNNAC 6 cut(s) 80, 145, 300, 403, 837, 849
Hpy99I CGWCG 2 cut(s) 38, 200
HpyAV CCTTC 5 cut(s) 151, 485, 572, 751, 788
HpyCH4IV ACGT 4 cut(s) 177, 195, 372, 854
HpyCH4V TGCA 5 cut(s) 19, 103, 675, 849, 869
HpyF10VI GCNNNNNNNGC 6 cut(s) 109, 473, 482, 579, 875, 1019
HpyF3I CTNAG 1 cut(s) 636
HpySE526I ACGT 4 cut(s) 177, 195, 372, 854
Hsp92II CATG 5 cut(s) 103, 298, 869, 936, 1018
KpnI GGTACC 1 cut(s) 367
Ksp22I TGATCA 1 cut(s) 862
Kzo9I GATC 3 cut(s) 862, 905, 918
LmnI GCTCC 2 cut(s) 419, 494
Lsp1109I GCAGC 3 cut(s) 437, 459, 560
MaeI CTAG 1 cut(s) 330
MaeII ACGT 4 cut(s) 177, 195, 372, 854
MaeIII GTNAC 2 cut(s) 424, 871
MalI GATC 3 cut(s) 864, 907, 920
MboI GATC 3 cut(s) 862, 905, 918
MboII GAAGA 5 cut(s) 22, 246, 369, 424, 674
MhlI GDGCHC 1 cut(s) 851
MluCI AATT 6 cut(s) 284, 643, 676, 789, 815, 928
MlyI GAGTC 1 cut(s) 647
MmeI TCCRAC 1 cut(s) 766
MnlI CCTC 6 cut(s) 102, 154, 402, 715, 791, 960
MseI TTAA 5 cut(s) 8, 215, 272, 587, 735
MslI CAYNNNNRTG 1 cut(s) 138
MspA1I CMGCKG 2 cut(s) 450, 476
MspI CCGG 4 cut(s) 231, 392, 731, 776
MspR9I CCNGG 1 cut(s) 731
Mva1269I GAATGC 1 cut(s) 222
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 6 cut(s) 109, 473, 482, 579, 875, 1019
NciI CCSGG 1 cut(s) 731
NdeI CATATG 1 cut(s) 15
NdeII GATC 3 cut(s) 862, 905, 918
NlaIII CATG 5 cut(s) 103, 298, 869, 936, 1018
NlaIV GGNNCC 1 cut(s) 365
NmeAIII GCCGAG 1 cut(s) 299
NmuCI GTSAC 1 cut(s) 424
OliI CACNNNNGTG 1 cut(s) 138
PctI GAATGC 1 cut(s) 222
PfeI GAWTC 3 cut(s) 439, 893, 970
PinAI ACCGGT 1 cut(s) 775
PkrI GCNGC 5 cut(s) 449, 452, 484, 575, 626
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
Ppu21I YACGTR 1 cut(s) 855
Psp1406I AACGTT 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 365
PstNI CAGNNNCTG 1 cut(s) 875
PvuII CAGCTG 1 cut(s) 450
RsaI GTAC 2 cut(s) 299, 365
RsaNI GTAC 2 cut(s) 298, 364
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 5 cut(s) 8, 215, 272, 587, 735
SatI GCNGC 5 cut(s) 448, 451, 483, 574, 625
Sau3AI GATC 3 cut(s) 862, 905, 918
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 1 cut(s) 731
SduI GDGCHC 1 cut(s) 851
SmiI ATTTAAAT 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 138
SnaBI TACGTA 1 cut(s) 855
Sse9I AATT 6 cut(s) 284, 643, 676, 789, 815, 928
SsiI CCGC 7 cut(s) 149, 251, 453, 476, 482, 582, 624
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 729
SwaI ATTTAAAT 1 cut(s) 216
TaiI ACGT 4 cut(s) 180, 198, 375, 857
TaqI TCGA 3 cut(s) 84, 117, 198
TasI AATT 6 cut(s) 284, 643, 676, 789, 815, 928
TatI WGTACW 1 cut(s) 297
TauI GCSGC 2 cut(s) 485, 627
TfiI GAWTC 3 cut(s) 439, 893, 970
Tru1I TTAA 5 cut(s) 8, 215, 272, 587, 735
Tru9I TTAA 5 cut(s) 8, 215, 272, 587, 735
TscAI CASTG 4 cut(s) 307, 756, 768, 844
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 3 cut(s) 447, 450, 573
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 5 cut(s) 36, 105, 770, 921, 1031
TspGWI ACGGA 1 cut(s) 918
TspRI CASTG 4 cut(s) 307, 756, 768, 844
VneI GTGCAC 1 cut(s) 847
XagI CCTNNNNNAGG 1 cut(s) 654
XapI RAATTY 2 cut(s) 284, 928
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.