Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0017472

Physical Location & Seq

Genomic Coordinates Forward (+)

10578963 .. 10580887

Gene Structure 1925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g18400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGACTTTCATACTCAGAAGCTCAACAATTCTACTGCAAGTGCTTCTAATCTTTGGAATTTGGGCTTCTCAAGCCTACTGCCGCACATTTCCTGATGCTGATGTCAATGTAATGGTGAAGAGACATGACCAGTGGATGGCCAGTCATGGACGCGCCTACAAAGACCATGCAGAGAAGAAGAAGCGTTTCAAGATATTCAAGGACAATGTGAAGTTCATAGAATCTTTCAACATTGGTGGAAATCAGCCTTACAGTCTAAGGATCAATGAATTCGCAGACCTGACTAATGAAGAATTTCTGGCCTTGCGCAATGGATACAATTTTCAGTCTTCAAATCTCATGTCATCATCTAAAGCATCATTTAAATATTATAATGTGACTGCAGTCCCATCTAGTATGGATTGGAGGAAGAAGGGAGCCGTCACCCCTGTCAGAGACCAGGGTAATTGTGGATGTTGCTGGGCATTTTCTGCAGTGGCAGCTACAGAAGGAGTTACAAAGCTGAAAACAGGAAAGTTGGTGTCTCTTTCGGAGCAACAACTAGTCGATTGTGACACTCGCAGTGCAGGTTGTTCGGGTGGTCTAATGGATTATGCCTTCCAGTTCATCATCCGCAACAAAGGCTTGGCAGCTGAAGCAGACTATCCTTATGAGGGAGTTGATGGGAGTTGCGTGAGGAACAAGGAGGAACCTCCTGCAGCCAAGATCACCGGCTATGAGGTTGTGCCAGAGAATGAGGAGGCTTTGTTGAAGGCCGTCGCGAACCAACCAGTCTCCGTTGCAATTGATTCCAGTGGAGTTGCCATGCAATTTTACTCTAGTGGGGTGTTCACAGGACAATGTGGAAGTCAATTGGACCATGGAGTAACTGCAGTTGGGTATGGGACAAGCGATGATGGTACAAAGTTTTGGCTGGTGAAAAATTCATGGGGTAGAAGCTGGGGTGAAGATGAGTACATAAGAATCCAAAGAGATGTCAATGTTAAGGGAGGTCTTTGTGGTATTACTGAGCAAGCTTCCTATCCTACTGTTGACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

347

Amino Acids

38.19

Weight (kDa)

6.46

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	42 - 99	2.5e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	129 - 343	3.3e-80	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45890
fragaria_vesca	FvH4_5g18400
prunus_persica	Prupe.4G059800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0010481
rosa_laevigata	RLG00000031756
rosa_multiflora	Rmu_sc0009313.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065840
rosa_rugosa	Rorug04G0450600
rosa_samantha	Rh5AG082000 Rh5BG077200
rosa_wichuraiana	Rw0G000770 Rw0G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
Acc16I	TGCGCA	1 cut(s)	308
Acc36I	ACCTGC	1 cut(s)	557
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccII	CGCG	2 cut(s)	153, 761
AciI	CCGC	2 cut(s)	82, 613
AclWI	GGATC	1 cut(s)	269
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	4 cut(s)	57, 269, 293, 922
AcuI	CTGAAG	1 cut(s)	654
AfaI	GTAC	2 cut(s)	901, 956
AfiI	CCNNNNNNNGG	2 cut(s)	136, 653
AgsI	TTSAA	5 cut(s)	190, 199, 229, 333, 751
AhlI	ACTAGT	1 cut(s)	541
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	6 cut(s)	21, 482, 502, 632, 939, 1016
AluI	AGCT	6 cut(s)	21, 482, 502, 632, 939, 1016
Alw26I	GTCTC	4 cut(s)	115, 429, 528, 778
AlwI	GGATC	1 cut(s)	269
AoxI	GGCC	3 cut(s)	138, 300, 753
ApeKI	GCWGC	3 cut(s)	479, 629, 698
ApoI	RAATTY	4 cut(s)	57, 269, 293, 922
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
Asp700I	GAANNNNTTC	2 cut(s)	185, 294
AspLEI	GCGC	2 cut(s)	155, 309
AspS9I	GGNCC	1 cut(s)	856
AsuHPI	GGTGA	5 cut(s)	127, 415, 700, 928, 956
AvaII	GGWCC	1 cut(s)	856
BalI	TGGCCA	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	321
BbvI	GCAGC	3 cut(s)	491, 641, 710
BccI	CCATC	4 cut(s)	130, 397, 656, 890
BceAI	ACGGC	2 cut(s)	404, 740
BcgI	CGANNNNNNTGC	2 cut(s)	555, 589
BciT130I	CCWGG	1 cut(s)	440
BciVI	GTATCC	1 cut(s)	308
BcoDI	GTCTC	4 cut(s)	115, 429, 528, 778
BcuI	ACTAGT	1 cut(s)	541
BfaI	CTAG	3 cut(s)	393, 542, 819
BfmI	CTRYAG	5 cut(s)	381, 471, 483, 696, 870
BfuAI	ACCTGC	1 cut(s)	557
BfuI	GTATCC	1 cut(s)	308
BisI	GCNGC	4 cut(s)	82, 480, 630, 699
BlsI	GCNGC	4 cut(s)	83, 481, 631, 700
Bme1390I	CCNGG	1 cut(s)	440
Bme18I	GGWCC	1 cut(s)	856
BmgT120I	GGNCC	1 cut(s)	856
BmiI	GGNNCC	2 cut(s)	418, 690
BmrFI	CCNGG	1 cut(s)	440
BmsI	GCATC	2 cut(s)	85, 365
BoxI	GACNNNNGTC	1 cut(s)	383
BpiI	GAAGAC	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	429
BsaJI	CCNNGG	2 cut(s)	439, 859
BsaXI	ACNNNNNCTCC	2 cut(s)	731, 761
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 653
Bse118I	RCCGGY	1 cut(s)	710
Bse1I	ACTGG	5 cut(s)	130, 141, 601, 770, 792
Bse3DI	GCAATG	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	2 cut(s)	439, 859
BseGI	GGATG	3 cut(s)	141, 458, 609
BseLI	CCNNNNNNNGG	2 cut(s)	136, 653
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	2 cut(s)	28, 999
BseNI	ACTGG	5 cut(s)	130, 141, 601, 770, 792
BseRI	GAGGAG	1 cut(s)	752
BseXI	GCAGC	3 cut(s)	491, 641, 710
BseYI	CCCAGC	2 cut(s)	459, 939
BsgI	GTGCAG	1 cut(s)	585
Bsh1236I	CGCG	2 cut(s)	153, 761
BshFI	GGCC	3 cut(s)	140, 302, 755
BsiSI	CCGG	1 cut(s)	711
BslFI	GGGAC	2 cut(s)	371, 898
BslI	CCNNNNNNNGG	2 cut(s)	136, 653
BsmAI	GTCTC	4 cut(s)	115, 429, 528, 778
BsmFI	GGGAC	2 cut(s)	371, 898
BsnI	GGCC	3 cut(s)	140, 302, 755
Bso31I	GGTCTC	1 cut(s)	429
Bsp143I	GATC	2 cut(s)	261, 705
Bsp19I	CCATGG	1 cut(s)	859
Bsp68I	TCGCGA	1 cut(s)	761
BspACI	CCGC	2 cut(s)	82, 613
BspANI	GGCC	3 cut(s)	140, 302, 755
BspCNI	CTCAG	2 cut(s)	27, 1000
BspFNI	CGCG	2 cut(s)	153, 761
BspLI	GGNNCC	2 cut(s)	418, 690
BspMAI	CTGCAG	4 cut(s)	385, 475, 700, 874
BspMI	ACCTGC	1 cut(s)	557
BspPI	GGATC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	710
BsrI	ACTGG	5 cut(s)	130, 141, 601, 770, 792
BssAI	RCCGGY	1 cut(s)	710
BssECI	CCNNGG	2 cut(s)	439, 859
BssMI	GATC	2 cut(s)	261, 705
BssT1I	CCWWGG	1 cut(s)	859
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	2 cut(s)	254, 1030
Bst6I	CTCTTC	1 cut(s)	113
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	1014
BstDEI	CTNAG	3 cut(s)	14, 257, 1008
BstDSI	CCRYGG	1 cut(s)	859
BstF5I	GGATG	3 cut(s)	141, 458, 609
BstFNI	CGCG	2 cut(s)	153, 761
BstHHI	GCGC	2 cut(s)	155, 309
BstKTI	GATC	2 cut(s)	264, 708
BstMAI	GTCTC	4 cut(s)	115, 429, 528, 778
BstMBI	GATC	2 cut(s)	261, 705
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 470, 479, 621, 635
BstNI	CCWGG	1 cut(s)	440
BstPAI	GACNNNNGTC	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	438
BstSFI	CTRYAG	5 cut(s)	381, 471, 483, 696, 870
BstUI	CGCG	2 cut(s)	153, 761
BstV1I	GCAGC	3 cut(s)	491, 641, 710
BstV2I	GAAGAC	1 cut(s)	321
BsuI	GTATCC	1 cut(s)	308
BsuRI	GGCC	3 cut(s)	140, 302, 755
BtgI	CCRYGG	1 cut(s)	859
BtgZI	GCGATG	1 cut(s)	906
BtsCI	GGATG	3 cut(s)	141, 458, 609
BtsI	GCAGTG	2 cut(s)	480, 568
BtsIMutI	CAGTG	4 cut(s)	137, 480, 568, 799
BtuMI	TCGCGA	1 cut(s)	761
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	1 cut(s)	1014
CfoI	GCGC	2 cut(s)	155, 309
Cfr10I	RCCGGY	1 cut(s)	710
Cfr13I	GGNCC	1 cut(s)	856
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	900, 955
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviAII	CATG	7 cut(s)	125, 146, 167, 340, 805, 860, 927
CviQI	GTAC	2 cut(s)	900, 955
DdeI	CTNAG	3 cut(s)	14, 257, 1008
DpnI	GATC	2 cut(s)	263, 707
DpnII	GATC	2 cut(s)	261, 705
DraI	TTTAAA	1 cut(s)	364
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	859
Eco31I	GGTCTC	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	856
Eco57I	CTGAAG	1 cut(s)	654
EcoRI	GAATTC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	438
EcoT14I	CCWWGG	1 cut(s)	859
ErhI	CCWWGG	1 cut(s)	859
FaeI	CATG	7 cut(s)	128, 149, 170, 343, 808, 863, 930
FaqI	GGGAC	2 cut(s)	371, 898
FatI	CATG	7 cut(s)	124, 145, 166, 339, 804, 859, 926
Fnu4HI	GCNGC	4 cut(s)	82, 480, 630, 699
FokI	GGATG	3 cut(s)	148, 465, 596
Fsp4HI	GCNGC	4 cut(s)	82, 480, 630, 699
FspBI	CTAG	3 cut(s)	393, 542, 819
FspI	TGCGCA	1 cut(s)	308
GlaI	GCGC	2 cut(s)	154, 308
GluI	GCNGC	4 cut(s)	82, 480, 630, 699
GsaI	CCCAGC	2 cut(s)	463, 943
HaeIII	GGCC	3 cut(s)	140, 302, 755
HapII	CCGG	1 cut(s)	711
HgaI	GACGC	1 cut(s)	159
HhaI	GCGC	2 cut(s)	155, 309
Hin1II	CATG	7 cut(s)	128, 149, 170, 343, 808, 863, 930
Hin6I	GCGC	2 cut(s)	153, 307
HinP1I	GCGC	2 cut(s)	153, 307
HincII	GTYRAC	1 cut(s)	1033
HindII	GTYRAC	1 cut(s)	1033
HindIII	AAGCTT	1 cut(s)	1014
HinfI	GANTC	3 cut(s)	221, 788, 963
HpaII	CCGG	1 cut(s)	711
HphI	GGTGA	5 cut(s)	127, 415, 700, 928, 956
Hpy166II	GTNNAC	2 cut(s)	831, 1033
Hpy188I	TCNGA	3 cut(s)	17, 434, 532
Hpy188III	TCNNGA	3 cut(s)	92, 190, 760
Hpy8I	GTNNAC	2 cut(s)	831, 1033
Hpy99I	CGWCG	1 cut(s)	761
HpyAV	CCTTC	4 cut(s)	406, 482, 607, 745
HpyCH4III	ACNGT	2 cut(s)	254, 1030
HpyCH4V	TGCA	9 cut(s)	37, 170, 383, 473, 566, 698, 782, 808, 872
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 470, 479, 621, 635
HpyF3I	CTNAG	3 cut(s)	14, 257, 1008
Hsp92II	CATG	7 cut(s)	128, 149, 170, 343, 808, 863, 930
HspAI	GCGC	2 cut(s)	153, 307
Kzo9I	GATC	2 cut(s)	261, 705
LmnI	GCTCC	2 cut(s)	416, 532
Lsp1109I	GCAGC	3 cut(s)	491, 641, 710
LweI	GCATC	2 cut(s)	85, 365
MaeI	CTAG	3 cut(s)	393, 542, 819
MaeIII	GTNAC	5 cut(s)	376, 421, 493, 551, 865
MalI	GATC	2 cut(s)	263, 707
MboI	GATC	2 cut(s)	261, 705
MboII	GAAGA	7 cut(s)	130, 187, 190, 302, 321, 421, 959
MfeI	CAATTG	2 cut(s)	783, 851
MlsI	TGGCCA	1 cut(s)	140
MluNI	TGGCCA	1 cut(s)	140
MnlI	CCTC	9 cut(s)	399, 646, 669, 679, 702, 712, 730, 733, 983
Mox20I	TGGCCA	1 cut(s)	140
MroXI	GAANNNNTTC	2 cut(s)	185, 294
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	2 cut(s)	363, 984
Msp20I	TGGCCA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	632
MspI	CCGG	1 cut(s)	711
MspR9I	CCNGG	1 cut(s)	440
MunI	CAATTG	2 cut(s)	783, 851
MvaI	CCWGG	1 cut(s)	440
MvnI	CGCG	2 cut(s)	153, 761
MwoI	GCNNNNNNNGC	5 cut(s)	71, 470, 479, 621, 635
NcoI	CCATGG	1 cut(s)	859
NdeII	GATC	2 cut(s)	261, 705
NlaIII	CATG	7 cut(s)	128, 149, 170, 343, 808, 863, 930
NlaIV	GGNNCC	2 cut(s)	418, 690
NmuCI	GTSAC	3 cut(s)	376, 421, 551
NruI	TCGCGA	1 cut(s)	761
NsbI	TGCGCA	1 cut(s)	308
PdmI	GAANNNNTTC	2 cut(s)	185, 294
PfeI	GAWTC	3 cut(s)	221, 788, 963
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	4 cut(s)	83, 481, 631, 700
PshAI	GACNNNNGTC	1 cut(s)	383
PsiI	TTATAA	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	438
PspFI	CCCAGC	2 cut(s)	459, 939
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	2 cut(s)	418, 690
PspPI	GGNCC	1 cut(s)	856
PstI	CTGCAG	4 cut(s)	385, 475, 700, 874
PvuII	CAGCTG	1 cut(s)	632
RruI	TCGCGA	1 cut(s)	761
RsaI	GTAC	2 cut(s)	901, 956
RsaNI	GTAC	2 cut(s)	900, 955
SaqAI	TTAA	2 cut(s)	363, 984
SatI	GCNGC	4 cut(s)	82, 480, 630, 699
Sau3AI	GATC	2 cut(s)	261, 705
Sau96I	GGNCC	1 cut(s)	856
ScrFI	CCNGG	1 cut(s)	440
SfaNI	GCATC	2 cut(s)	85, 365
SfcI	CTRYAG	5 cut(s)	381, 471, 483, 696, 870
SinI	GGWCC	1 cut(s)	856
SmiI	ATTTAAAT	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
SpeI	ACTAGT	1 cut(s)	541
SsiI	CCGC	2 cut(s)	82, 613
SspI	AATATT	1 cut(s)	368
SspMI	CTAG	3 cut(s)	393, 542, 819
StyD4I	CCNGG	1 cut(s)	438
StyI	CCWWGG	1 cut(s)	859
SwaI	ATTTAAAT	1 cut(s)	364
TaaI	ACNGT	2 cut(s)	254, 1030
TaqI	TCGA	1 cut(s)	546
TatI	WGTACW	1 cut(s)	954
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	3 cut(s)	221, 788, 963
Tru1I	TTAA	2 cut(s)	363, 984
Tru9I	TTAA	2 cut(s)	363, 984
TscAI	CASTG	4 cut(s)	137, 480, 568, 799
TseFI	GTSAC	3 cut(s)	376, 421, 551
TseI	GCWGC	3 cut(s)	479, 629, 698
Tsp45I	GTSAC	3 cut(s)	376, 421, 551
TspDTI	ATGAA	5 cut(s)	205, 282, 303, 595, 915
TspGWI	ACGGA	1 cut(s)	766
TspRI	CASTG	4 cut(s)	137, 480, 568, 799
Van91I	CCANNNNNTGG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	856
XapI	RAATTY	4 cut(s)	57, 269, 293, 922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	446
XmnI	GAANNNNTTC	2 cut(s)	185, 294
XspI	CTAG	3 cut(s)	393, 542, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.