Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0017472

Physical Location & Seq

Genomic Coordinates Reverse (-)

2850221 .. 2851701

Gene Structure 1481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G059800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCTTTCACACTTAGAAAGTCATCATCTATTCTACTGACACTTTTAGTCTTGGGGGTGTGGGCTTCCCAAGCCAACTGCCGCACATTGCTTGATGCTCATACTTCCATGTTAGATAGACATGAGCAGTGGATGGCTCGATATGTACCCATCTACAAGGACGATGAAGAGAGGGAAAAGCGTTTCCAGATATTCAAGGACAATGTGGAGTTCATAGAGTCCTTCAACTATGCTAGCAATCAGCCTTACAAGCTAAACATCAATGGATTTGCAGACCAGAGTCATGAAGAATTCCAAGCCTCTCGCAACCGATACAGAACATCCCTCAATACCATGTCATCTAAGACACCTTTTAGATATGAGAATGTGACTGCAATCCCATCCAGCATGGATTGGAGAAAAAAGGGAGCTGTCACCCCCATCAAGGACCAGGGTGAATGTGGATGCTGTTGGGCATTTTCTGCAGTGGCAGCCACAGAAGGCACTACAAAGCTGAAAAGTGGGAAGCTCGTGTCTCTTTCGGAGCAAGAGCTAGTGGATTGTGACACTCAGGGTGAGAACCAAGGCTGTGAGGGTGGTCTCATGGATGATGCCTTTAAGTTTGTAATGCGCAACAAAGGCCTGGCAGCTGAAGCAAACTACCCCTATAGAGGAATTGATGGAATTTGCAACAAGAACAAGGTAGCATATCATGCAGCAAAGATCACAGGTTATGAAGATGTACCAGCCAACGAGTTGGCTTTGTTGAAGGCCGTGGCCAATCAACCTGTTTCTGTTGCAATTGACGCCGGTGGATACGAATTCCAGTTTTACTCACGTGGAATTCTCACAGGAGATTGTGGAACTCATTTGAACCATGGTGTCACTGTAGTTGGGTATGGGACAGGTGCTGATGGTACCAAGTATTGGTTAGTCAAAAACTCATGGGGTGCAGAGTGGGGTGAGGGTGGATATGTAAGAATTCAAAGAGATGTGCATACTAGGCAAGGCCTTTGTGGCATTGCCATGAAAGCTTCTTATCCTACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

344

Amino Acids

38.1

Weight (kDa)

6.66

Isoelectric Point (pI)

24.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45890
fragaria_vesca	FvH4_5g18400
prunus_persica	Prupe.4G059800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0010481
rosa_laevigata	RLG00000031756
rosa_multiflora	Rmu_sc0009313.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065840
rosa_rugosa	Rorug04G0450600
rosa_samantha	Rh5AG082000 Rh5BG077200
rosa_wichuraiana	Rw0G000770 Rw0G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	611
Acc65I	GGTACC	1 cut(s)	896
AccB1I	GGYRCC	1 cut(s)	896
AccB7I	CCANNNNNTGG	1 cut(s)	906
AciI	CCGC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	756
AcsI	RAATTY	5 cut(s)	290, 663, 800, 822, 960
AcuI	CTGAAG	1 cut(s)	651
AcvI	CACGTG	1 cut(s)	818
AcyI	GRCGYC	1 cut(s)	786
AfaI	GTAC	3 cut(s)	147, 723, 898
AfiI	CCNNNNNNNGG	3 cut(s)	424, 650, 906
AgsI	TTSAA	5 cut(s)	196, 226, 748, 853, 965
AjnI	CCWGG	2 cut(s)	429, 621
AluBI	AGCT	7 cut(s)	253, 410, 493, 508, 532, 629, 1013
AluI	AGCT	7 cut(s)	253, 410, 493, 508, 532, 629, 1013
Alw26I	GTCTC	2 cut(s)	519, 584
AlwNI	CAGNNNCTG	1 cut(s)	890
AoxI	GGCC	4 cut(s)	619, 750, 756, 988
ApeKI	GCWGC	3 cut(s)	470, 626, 695
ApoI	RAATTY	5 cut(s)	290, 663, 800, 822, 960
Asp718I	GGTACC	1 cut(s)	896
AspLEI	GCGC	1 cut(s)	612
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	4 cut(s)	406, 446, 566, 953
AsuNHI	GCTAGC	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	427
BalI	TGGCCA	1 cut(s)	758
BanI	GGYRCC	1 cut(s)	896
BauI	CACGAG	1 cut(s)	509
BbrPI	CACGTG	1 cut(s)	818
BbvI	GCAGC	3 cut(s)	482, 638, 707
BccI	CCATC	6 cut(s)	127, 158, 388, 428, 653, 887
BceAI	ACGGC	1 cut(s)	737
BciT130I	CCWGG	2 cut(s)	431, 623
BciVI	GTATCC	1 cut(s)	788
BcoDI	GTCTC	2 cut(s)	519, 584
BfaI	CTAG	3 cut(s)	234, 533, 981
BfmI	CTRYAG	3 cut(s)	462, 646, 867
BfuI	GTATCC	1 cut(s)	788
BglI	GCCNNNNNGGC	1 cut(s)	996
BisI	GCNGC	4 cut(s)	82, 471, 627, 696
BlsI	GCNGC	4 cut(s)	83, 472, 628, 697
Bme1390I	CCNGG	2 cut(s)	431, 623
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	1 cut(s)	898
BmrFI	CCNGG	2 cut(s)	431, 623
BmsI	GCATC	3 cut(s)	85, 434, 580
BmtI	GCTAGC	1 cut(s)	237
BoxI	GACNNNNGTC	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	818
BsaHI	GRCGYC	1 cut(s)	786
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	4 cut(s)	430, 562, 753, 856
Bsc4I	CCNNNNNNNGG	3 cut(s)	424, 650, 906
Bse118I	RCCGGY	1 cut(s)	788
Bse1I	ACTGG	1 cut(s)	805
Bse3DI	GCAATG	2 cut(s)	86, 999
BseBI	CCWGG	2 cut(s)	431, 623
BseDI	CCNNGG	4 cut(s)	430, 562, 753, 856
BseGI	GGATG	5 cut(s)	138, 320, 380, 449, 592
BseLI	CCNNNNNNNGG	3 cut(s)	424, 650, 906
BseMI	GCAATG	2 cut(s)	86, 999
BseMII	CTCAG	1 cut(s)	563
BseNI	ACTGG	1 cut(s)	805
BseXI	GCAGC	3 cut(s)	482, 638, 707
BsgI	GTGCAG	1 cut(s)	951
BshFI	GGCC	4 cut(s)	621, 752, 758, 990
BshNI	GGYRCC	1 cut(s)	896
BsiSI	CCGG	1 cut(s)	789
BslFI	GGGAC	1 cut(s)	895
BslI	CCNNNNNNNGG	3 cut(s)	424, 650, 906
BsmAI	GTCTC	2 cut(s)	519, 584
BsmFI	GGGAC	1 cut(s)	895
BsnI	GGCC	4 cut(s)	621, 752, 758, 990
Bso31I	GGTCTC	1 cut(s)	584
Bsp143I	GATC	1 cut(s)	702
Bsp19I	CCATGG	1 cut(s)	856
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	4 cut(s)	621, 752, 758, 990
BspCNI	CTCAG	1 cut(s)	562
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	898
BspMAI	CTGCAG	1 cut(s)	466
BspOI	GCTAGC	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	896
BspTNI	GGTCTC	1 cut(s)	584
BsrDI	GCAATG	2 cut(s)	86, 999
BsrFI	RCCGGY	1 cut(s)	788
BsrI	ACTGG	1 cut(s)	805
BssAI	RCCGGY	1 cut(s)	788
BssECI	CCNNGG	4 cut(s)	430, 562, 753, 856
BssMI	GATC	1 cut(s)	702
BssNI	GRCGYC	1 cut(s)	786
BssSI	CACGAG	1 cut(s)	509
BssT1I	CCWWGG	2 cut(s)	562, 856
Bst2BI	CACGAG	1 cut(s)	509
Bst2UI	CCWGG	2 cut(s)	431, 623
Bst4CI	ACNGT	1 cut(s)	868
Bst6I	CTCTTC	1 cut(s)	162
BstACI	GRCGYC	1 cut(s)	786
BstAPI	GCANNNNNTGC	2 cut(s)	461, 692
BstBAI	YACGTR	1 cut(s)	818
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	3 cut(s)	14, 342, 549
BstDSI	CCRYGG	2 cut(s)	753, 856
BstF5I	GGATG	5 cut(s)	138, 320, 380, 449, 592
BstHHI	GCGC	1 cut(s)	612
BstKTI	GATC	1 cut(s)	705
BstMAI	GTCTC	2 cut(s)	519, 584
BstMBI	GATC	1 cut(s)	702
BstNI	CCWGG	2 cut(s)	431, 623
BstPAI	GACNNNNGTC	1 cut(s)	279
BstSCI	CCNGG	2 cut(s)	429, 621
BstSFI	CTRYAG	3 cut(s)	462, 646, 867
BstV1I	GCAGC	3 cut(s)	482, 638, 707
BstXI	CCANNNNNNTGG	1 cut(s)	736
BsuI	GTATCC	1 cut(s)	788
BsuRI	GGCC	4 cut(s)	621, 752, 758, 990
BtgI	CCRYGG	2 cut(s)	753, 856
BtsCI	GGATG	5 cut(s)	138, 320, 380, 449, 592
BtsI	GCAGTG	2 cut(s)	134, 471
BtsIMutI	CAGTG	3 cut(s)	134, 471, 864
Cac8I	GCNNGC	1 cut(s)	235
CaiI	CAGNNNCTG	1 cut(s)	890
CciI	TCATGA	1 cut(s)	283
CfoI	GCGC	1 cut(s)	612
Cfr10I	RCCGGY	1 cut(s)	788
Cfr13I	GGNCC	1 cut(s)	427
CseI	GACGC	1 cut(s)	794
Csp6I	GTAC	3 cut(s)	146, 722, 897
CviQI	GTAC	3 cut(s)	146, 722, 897
DdeI	CTNAG	3 cut(s)	14, 342, 549
DpnI	GATC	1 cut(s)	704
DpnII	GATC	1 cut(s)	702
EaeI	YGGCCR	1 cut(s)	756
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco130I	CCWWGG	2 cut(s)	562, 856
Eco147I	AGGCCT	2 cut(s)	621, 990
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	651
Eco72I	CACGTG	1 cut(s)	818
EcoRI	GAATTC	4 cut(s)	290, 800, 822, 960
EcoRII	CCWGG	2 cut(s)	429, 621
EcoT14I	CCWWGG	2 cut(s)	562, 856
ErhI	CCWWGG	2 cut(s)	562, 856
FaqI	GGGAC	1 cut(s)	895
Fnu4HI	GCNGC	4 cut(s)	82, 471, 627, 696
FokI	GGATG	5 cut(s)	145, 307, 367, 456, 599
Fsp4HI	GCNGC	4 cut(s)	82, 471, 627, 696
FspBI	CTAG	3 cut(s)	234, 533, 981
FspI	TGCGCA	1 cut(s)	611
GlaI	GCGC	1 cut(s)	611
GluI	GCNGC	4 cut(s)	82, 471, 627, 696
HaeIII	GGCC	4 cut(s)	621, 752, 758, 990
HapII	CCGG	1 cut(s)	789
HgaI	GACGC	1 cut(s)	794
HhaI	GCGC	1 cut(s)	612
Hin1I	GRCGYC	1 cut(s)	786
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	1011
HinfI	GANTC	2 cut(s)	218, 280
HpaII	CCGG	1 cut(s)	789
HphI	GGTGA	4 cut(s)	406, 446, 566, 953
Hpy188I	TCNGA	1 cut(s)	523
Hpy188III	TCNNGA	2 cut(s)	187, 284
HpyAV	CCTTC	3 cut(s)	232, 473, 742
HpyCH4III	ACNGT	1 cut(s)	868
HpyCH4IV	ACGT	1 cut(s)	817
HpyCH4V	TGCA	8 cut(s)	272, 374, 464, 669, 695, 779, 932, 976
HpyF3I	CTNAG	3 cut(s)	14, 342, 549
HpySE526I	ACGT	1 cut(s)	817
Hsp92I	GRCGYC	1 cut(s)	786
HspAI	GCGC	1 cut(s)	610
KpnI	GGTACC	1 cut(s)	900
Kzo9I	GATC	1 cut(s)	702
LmnI	GCTCC	2 cut(s)	407, 523
Lsp1109I	GCAGC	3 cut(s)	482, 638, 707
LweI	GCATC	3 cut(s)	85, 434, 580
MaeI	CTAG	3 cut(s)	234, 533, 981
MaeII	ACGT	1 cut(s)	817
MaeIII	GTNAC	4 cut(s)	367, 412, 542, 862
MalI	GATC	1 cut(s)	704
MboI	GATC	1 cut(s)	702
MboII	GAAGA	3 cut(s)	179, 299, 728
MfeI	CAATTG	1 cut(s)	780
MlsI	TGGCCA	1 cut(s)	758
MluCI	AATT	7 cut(s)	290, 654, 663, 780, 800, 822, 960
MluNI	TGGCCA	1 cut(s)	758
MlyI	GAGTC	2 cut(s)	227, 289
MnlI	CCTC	6 cut(s)	165, 310, 335, 565, 644, 937
Mox20I	TGGCCA	1 cut(s)	758
MscI	TGGCCA	1 cut(s)	758
MseI	TTAA	1 cut(s)	597
MslI	CAYNNNNRTG	1 cut(s)	1004
Msp20I	TGGCCA	1 cut(s)	758
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	1 cut(s)	789
MspR9I	CCNGG	2 cut(s)	431, 623
MunI	CAATTG	1 cut(s)	780
MvaI	CCWGG	2 cut(s)	431, 623
NcoI	CCATGG	1 cut(s)	856
NdeII	GATC	1 cut(s)	702
NheI	GCTAGC	1 cut(s)	233
NlaIV	GGNNCC	1 cut(s)	898
NmuCI	GTSAC	4 cut(s)	367, 412, 542, 862
NsbI	TGCGCA	1 cut(s)	611
PagI	TCATGA	1 cut(s)	283
PceI	AGGCCT	2 cut(s)	621, 990
PflMI	CCANNNNNTGG	1 cut(s)	906
PkrI	GCNGC	4 cut(s)	83, 472, 628, 697
PleI	GAGTC	2 cut(s)	226, 288
PmaCI	CACGTG	1 cut(s)	818
PmlI	CACGTG	1 cut(s)	818
PpsI	GAGTC	2 cut(s)	226, 288
Ppu21I	YACGTR	1 cut(s)	818
PshAI	GACNNNNGTC	1 cut(s)	279
Psp6I	CCWGG	2 cut(s)	429, 621
PspCI	CACGTG	1 cut(s)	818
PspGI	CCWGG	2 cut(s)	429, 621
PspN4I	GGNNCC	1 cut(s)	898
PspPI	GGNCC	1 cut(s)	427
PstI	CTGCAG	1 cut(s)	466
PstNI	CAGNNNCTG	1 cut(s)	890
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	3 cut(s)	147, 723, 898
RsaNI	GTAC	3 cut(s)	146, 722, 897
RseI	CAYNNNNRTG	1 cut(s)	1004
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	4 cut(s)	82, 471, 627, 696
Sau3AI	GATC	1 cut(s)	702
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	2 cut(s)	227, 289
ScrFI	CCNGG	2 cut(s)	431, 623
SfaNI	GCATC	3 cut(s)	85, 434, 580
SfcI	CTRYAG	3 cut(s)	462, 646, 867
SgrAI	CRCCGGYG	1 cut(s)	788
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	1004
Sse9I	AATT	7 cut(s)	290, 654, 663, 780, 800, 822, 960
SseBI	AGGCCT	2 cut(s)	621, 990
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	3 cut(s)	234, 533, 981
StuI	AGGCCT	2 cut(s)	621, 990
StyD4I	CCNGG	2 cut(s)	429, 621
StyI	CCWWGG	2 cut(s)	562, 856
TaaI	ACNGT	1 cut(s)	868
TaiI	ACGT	1 cut(s)	820
TaqI	TCGA	1 cut(s)	139
TasI	AATT	7 cut(s)	290, 654, 663, 780, 800, 822, 960
TauI	GCSGC	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	3 cut(s)	134, 471, 871
TseFI	GTSAC	4 cut(s)	367, 412, 542, 862
TseI	GCWGC	3 cut(s)	470, 626, 695
Tsp45I	GTSAC	4 cut(s)	367, 412, 542, 862
TspDTI	ATGAA	5 cut(s)	180, 202, 300, 729, 1022
TspRI	CASTG	3 cut(s)	134, 471, 871
Van91I	CCANNNNNTGG	1 cut(s)	906
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	5 cut(s)	290, 663, 800, 822, 960
XcmI	CCANNNNNNNNNTGG	1 cut(s)	437
XspI	CTAG	3 cut(s)	234, 533, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.