Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009313.1

Orthogroup ID

OG0017472

Physical Location & Seq

Genomic Coordinates Forward (+)

1702 .. 3209

Gene Structure 1508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009313.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

atggctttcatactcaaaagctcgtcaattctactgcatgtgcttctagtctttggaatttgggcttcccaagcctactgccgcacattgcctgatgctgaggtcaatgtaatgctaaagaggcatgaccagtggatggctcgtcatggacgtgcctacaaggaccatgcggagaaggagaagcgtttcaagatattcaaggacaatgtggagttcatagagtctttcaacaggggtgggaatcagccttacagtctaaggatcaatgaatttgcagaccagactaatgaagaattcttgacctcgcgcagtggatacaattttcagtctccagatctcatgtcatcatctgaatcatcatttagatatgacaatgtgactgcagtcccatccagtatggattggagggagaacggagctgtcacccctgtcaaggaccagggtgactgtgtggcagctacagaaggcattacgaagctgaaaacagggaagttggtgtctctttctgagcaacagctagtcgattgtgacactcggagtgcaggttgtcagggtggtctaatggattatgcctttaagttcatcatccgcaacaaaggcctggcagctgaagcaaactacccttatcagggagttgacgggatttgcatgaggaacagggaggaatcacctgcagccaagatcacaggctatgaggttgtgccgaataatgaggaggctttgttgaaggccgtggcgaaccaaccggtctctgttgcaattgatgccagtggaattgccatgcagttttactctagtggggtgttcacaggacaatgtggaagtcaattggatcatggagtaactgcagttgggtatgggacaagtgatgatgatggtacgaagttttggctattgaaaaattcatggggtagaagctggggtgaagatgggtacataagaatccaaagagatgtcaatgttaggggaggtctttgcggtgttactaagcaagcttcctatcctactgttgacttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

339

Amino Acids

37.54

Weight (kDa)

5.66

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45890
fragaria_vesca	FvH4_5g18400
prunus_persica	Prupe.4G059800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0010481
rosa_laevigata	RLG00000031756
rosa_multiflora	Rmu_sc0009313.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065840
rosa_rugosa	Rorug04G0450600
rosa_samantha	Rh5AG082000 Rh5BG077200
rosa_wichuraiana	Rw0G000770 Rw0G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	679
Acc36I	ACCTGC	2 cut(s)	533, 679
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccII	CGCG	1 cut(s)	307
AciI	CCGC	4 cut(s)	82, 170, 589, 978
AclWI	GGATC	2 cut(s)	269, 840
AcsI	RAATTY	4 cut(s)	57, 269, 293, 901
AcuI	CTGAAG	1 cut(s)	630
AfaI	GTAC	2 cut(s)	880, 935
AfiI	CCNNNNNNNGG	4 cut(s)	136, 433, 628, 629
AgeI	ACCGGT	1 cut(s)	745
AgsI	TTSAA	5 cut(s)	190, 199, 229, 727, 898
AjiI	CACGTC	1 cut(s)	152
AjnI	CCWGG	2 cut(s)	438, 600
AluBI	AGCT	8 cut(s)	21, 419, 458, 478, 517, 608, 918, 995
AluI	AGCT	8 cut(s)	21, 419, 458, 478, 517, 608, 918, 995
Alw26I	GTCTC	3 cut(s)	333, 504, 754
AlwI	GGATC	2 cut(s)	269, 840
AoxI	GGCC	2 cut(s)	598, 729
ApeKI	GCWGC	3 cut(s)	455, 605, 674
ApoI	RAATTY	4 cut(s)	57, 269, 293, 901
AsiGI	ACCGGT	1 cut(s)	745
Asp700I	GAANNNNTTC	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	2 cut(s)	163, 436
AsuHPI	GGTGA	4 cut(s)	415, 455, 660, 935
AvaII	GGWCC	2 cut(s)	163, 436
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	3 cut(s)	467, 617, 686
BccI	CCATC	4 cut(s)	130, 397, 869, 923
BceAI	ACGGC	1 cut(s)	716
BciT130I	CCWGG	2 cut(s)	440, 602
BciVI	GTATCC	1 cut(s)	308
BcoDI	GTCTC	3 cut(s)	333, 504, 754
BfaI	CTAG	3 cut(s)	47, 518, 795
BfmI	CTRYAG	4 cut(s)	381, 459, 672, 846
BfuAI	ACCTGC	2 cut(s)	533, 679
BfuI	GTATCC	1 cut(s)	308
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	4 cut(s)	82, 456, 606, 675
BlsI	GCNGC	4 cut(s)	83, 457, 607, 676
Bme1390I	CCNGG	2 cut(s)	440, 602
Bme18I	GGWCC	2 cut(s)	163, 436
BmgBI	CACGTC	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	163, 436
BmrFI	CCNGG	2 cut(s)	440, 602
BmsI	GCATC	2 cut(s)	85, 754
BoxI	GACNNNNGTC	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	315
Bpu10I	CCTNAGC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	754
BsaJI	CCNNGG	2 cut(s)	439, 732
BsaWI	WCCGGW	1 cut(s)	745
BsaXI	ACNNNNNCTCC	4 cut(s)	529, 559, 707, 737
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 433, 628, 629
Bse118I	RCCGGY	1 cut(s)	745
Bse1I	ACTGG	3 cut(s)	130, 393, 768
Bse3DI	GCAATG	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	440, 602
BseDI	CCNNGG	2 cut(s)	439, 732
BseGI	GGATG	3 cut(s)	141, 389, 585
BseLI	CCNNNNNNNGG	4 cut(s)	136, 433, 628, 629
BseMI	GCAATG	1 cut(s)	86
BseMII	CTCAG	2 cut(s)	90, 498
BseNI	ACTGG	3 cut(s)	130, 393, 768
BseRI	GAGGAG	1 cut(s)	728
BseXI	GCAGC	3 cut(s)	467, 617, 686
BseYI	CCCAGC	1 cut(s)	918
BsgI	GTGCAG	1 cut(s)	561
Bsh1236I	CGCG	1 cut(s)	307
BshFI	GGCC	2 cut(s)	600, 731
BshTI	ACCGGT	1 cut(s)	745
BsiSI	CCGG	1 cut(s)	746
BslFI	GGGAC	2 cut(s)	371, 874
BslI	CCNNNNNNNGG	4 cut(s)	136, 433, 628, 629
BsmAI	GTCTC	3 cut(s)	333, 504, 754
BsmFI	GGGAC	2 cut(s)	371, 874
BsnI	GGCC	2 cut(s)	600, 731
Bso31I	GGTCTC	1 cut(s)	754
Bsp143I	GATC	4 cut(s)	261, 334, 681, 832
BspACI	CCGC	4 cut(s)	82, 170, 589, 978
BspANI	GGCC	2 cut(s)	600, 731
BspCNI	CTCAG	2 cut(s)	91, 499
BspFNI	CGCG	1 cut(s)	307
BspMAI	CTGCAG	3 cut(s)	385, 676, 850
BspMI	ACCTGC	2 cut(s)	533, 679
BspPI	GGATC	2 cut(s)	269, 840
BspTNI	GGTCTC	1 cut(s)	754
BsrDI	GCAATG	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	745
BsrI	ACTGG	3 cut(s)	130, 393, 768
BssAI	RCCGGY	1 cut(s)	745
BssECI	CCNNGG	2 cut(s)	439, 732
BssMI	GATC	4 cut(s)	261, 334, 681, 832
Bst2UI	CCWGG	2 cut(s)	440, 602
Bst4CI	ACNGT	3 cut(s)	254, 449, 1009
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstC8I	GCNNGC	1 cut(s)	993
BstDEI	CTNAG	4 cut(s)	99, 257, 507, 987
BstDSI	CCRYGG	1 cut(s)	732
BstF5I	GGATG	3 cut(s)	141, 389, 585
BstFNI	CGCG	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	4 cut(s)	264, 337, 684, 835
BstMAI	GTCTC	3 cut(s)	333, 504, 754
BstMBI	GATC	4 cut(s)	261, 334, 681, 832
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 121, 597, 611, 764
BstNI	CCWGG	2 cut(s)	440, 602
BstNSI	RCATGY	1 cut(s)	41
BstPAI	GACNNNNGTC	1 cut(s)	383
BstSCI	CCNGG	2 cut(s)	438, 600
BstSFI	CTRYAG	4 cut(s)	381, 459, 672, 846
BstUI	CGCG	1 cut(s)	307
BstV1I	GCAGC	3 cut(s)	467, 617, 686
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuI	GTATCC	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	600, 731
BtgI	CCRYGG	1 cut(s)	732
BtrI	CACGTC	1 cut(s)	152
BtsCI	GGATG	3 cut(s)	141, 389, 585
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	3 cut(s)	137, 316, 775
BveI	ACCTGC	2 cut(s)	533, 679
Cac8I	GCNNGC	1 cut(s)	993
CfoI	GCGC	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	745
Cfr13I	GGNCC	2 cut(s)	163, 436
Csp6I	GTAC	2 cut(s)	879, 934
CspAI	ACCGGT	1 cut(s)	745
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviAII	CATG	9 cut(s)	38, 125, 146, 167, 340, 649, 781, 836, 906
CviQI	GTAC	2 cut(s)	879, 934
DdeI	CTNAG	4 cut(s)	99, 257, 507, 987
DpnI	GATC	4 cut(s)	263, 336, 683, 834
DpnII	GATC	4 cut(s)	261, 334, 681, 832
Eco147I	AGGCCT	1 cut(s)	600
Eco31I	GGTCTC	1 cut(s)	754
Eco47I	GGWCC	2 cut(s)	163, 436
Eco57I	CTGAAG	1 cut(s)	630
EcoRI	GAATTC	1 cut(s)	293
EcoRII	CCWGG	2 cut(s)	438, 600
FaeI	CATG	9 cut(s)	41, 128, 149, 170, 343, 652, 784, 839, 909
FaqI	GGGAC	2 cut(s)	371, 874
FatI	CATG	9 cut(s)	37, 124, 145, 166, 339, 648, 780, 835, 905
Fnu4HI	GCNGC	4 cut(s)	82, 456, 606, 675
FokI	GGATG	3 cut(s)	148, 376, 572
Fsp4HI	GCNGC	4 cut(s)	82, 456, 606, 675
FspBI	CTAG	3 cut(s)	47, 518, 795
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	4 cut(s)	82, 456, 606, 675
GsaI	CCCAGC	1 cut(s)	922
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	2 cut(s)	600, 731
HapII	CCGG	1 cut(s)	746
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	9 cut(s)	41, 128, 149, 170, 343, 652, 784, 839, 909
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HincII	GTYRAC	2 cut(s)	637, 1012
HindII	GTYRAC	2 cut(s)	637, 1012
HindIII	AAGCTT	1 cut(s)	993
HinfI	GANTC	5 cut(s)	221, 241, 353, 665, 942
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	4 cut(s)	415, 455, 660, 935
Hpy166II	GTNNAC	3 cut(s)	637, 807, 1012
Hpy188I	TCNGA	3 cut(s)	352, 508, 537
Hpy188III	TCNNGA	3 cut(s)	190, 298, 332
Hpy8I	GTNNAC	3 cut(s)	637, 807, 1012
HpyAV	CCTTC	3 cut(s)	169, 458, 721
HpyCH4III	ACNGT	3 cut(s)	254, 449, 1009
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	9 cut(s)	37, 275, 383, 542, 648, 674, 758, 784, 848
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 121, 597, 611, 764
HpyF3I	CTNAG	4 cut(s)	99, 257, 507, 987
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	9 cut(s)	41, 128, 149, 170, 343, 652, 784, 839, 909
HspAI	GCGC	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	261, 334, 681, 832
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	3 cut(s)	467, 617, 686
LweI	GCATC	2 cut(s)	85, 754
MaeI	CTAG	3 cut(s)	47, 518, 795
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	6 cut(s)	376, 421, 443, 527, 841, 982
MalI	GATC	4 cut(s)	263, 336, 683, 834
MboI	GATC	4 cut(s)	261, 334, 681, 832
MboII	GAAGA	2 cut(s)	302, 938
MfeI	CAATTG	2 cut(s)	759, 827
MflI	RGATCY	1 cut(s)	334
MluCI	AATT	9 cut(s)	27, 57, 269, 293, 319, 759, 774, 827, 901
MlyI	GAGTC	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	185
MseI	TTAA	1 cut(s)	576
MslI	CAYNNNNRTG	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	2 cut(s)	440, 602
MunI	CAATTG	2 cut(s)	759, 827
MvaI	CCWGG	2 cut(s)	440, 602
MvnI	CGCG	1 cut(s)	307
MwoI	GCNNNNNNNGC	5 cut(s)	71, 121, 597, 611, 764
NdeII	GATC	4 cut(s)	261, 334, 681, 832
NlaIII	CATG	9 cut(s)	41, 128, 149, 170, 343, 652, 784, 839, 909
NmuCI	GTSAC	4 cut(s)	376, 421, 443, 527
NspI	RCATGY	1 cut(s)	41
PaqCI	CACCTGC	1 cut(s)	679
PceI	AGGCCT	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	185
PfeI	GAWTC	4 cut(s)	241, 353, 665, 942
PflMI	CCANNNNNTGG	1 cut(s)	136
PinAI	ACCGGT	1 cut(s)	745
PkrI	GCNGC	4 cut(s)	83, 457, 607, 676
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PshAI	GACNNNNGTC	1 cut(s)	383
Psp6I	CCWGG	2 cut(s)	438, 600
PspFI	CCCAGC	1 cut(s)	918
PspGI	CCWGG	2 cut(s)	438, 600
PspPI	GGNCC	2 cut(s)	163, 436
PstI	CTGCAG	3 cut(s)	385, 676, 850
PsuI	RGATCY	1 cut(s)	334
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	2 cut(s)	880, 935
RsaNI	GTAC	2 cut(s)	879, 934
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	4 cut(s)	82, 456, 606, 675
Sau3AI	GATC	4 cut(s)	261, 334, 681, 832
Sau96I	GGNCC	2 cut(s)	163, 436
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	2 cut(s)	440, 602
SfaNI	GCATC	2 cut(s)	85, 754
SfcI	CTRYAG	4 cut(s)	381, 459, 672, 846
SinI	GGWCC	2 cut(s)	163, 436
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	9 cut(s)	27, 57, 269, 293, 319, 759, 774, 827, 901
SseBI	AGGCCT	1 cut(s)	600
SsiI	CCGC	4 cut(s)	82, 170, 589, 978
SspMI	CTAG	3 cut(s)	47, 518, 795
StuI	AGGCCT	1 cut(s)	600
StyD4I	CCNGG	2 cut(s)	438, 600
TaaI	ACNGT	3 cut(s)	254, 449, 1009
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	522
TasI	AATT	9 cut(s)	27, 57, 269, 293, 319, 759, 774, 827, 901
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	4 cut(s)	241, 353, 665, 942
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	3 cut(s)	137, 316, 775
TseFI	GTSAC	4 cut(s)	376, 421, 443, 527
TseI	GCWGC	3 cut(s)	455, 605, 674
Tsp45I	GTSAC	4 cut(s)	376, 421, 443, 527
TspDTI	ATGAA	5 cut(s)	205, 282, 303, 571, 894
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	3 cut(s)	137, 316, 775
Van91I	CCANNNNNTGG	1 cut(s)	136
VpaK11BI	GGWCC	2 cut(s)	163, 436
XapI	RAATTY	4 cut(s)	57, 269, 293, 901
XceI	RCATGY	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	185
XspI	CTAG	3 cut(s)	47, 518, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.