AT5G45970
ERF Family

Belongs to the small GTPase superfamily. Rho family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017482
Physical Location & Seq
Forward (+)
18643540 .. 18645976
2437 bp
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UTR
Exon/CDS
Intron
AT5G45970.1

Sequence Viewer

Length: 606 bp
ATGAGCACAGCAAGATTCATTAAGTGTGTGACTGTCGGAGATGGAGCAGTGGGAAAGACTTGTATGCTCATTTCATATACCAGCAATACGTTTCCTACGGATTATGTTCCAACAGTTTTCGACAACTTCAGCGCAAATGTGGTGGTCGACGGGAGTACCGTGAACCTTGGCCTGTGGGATACTGCCGGTCAGGAAGATTATAATAGGCTTAGGCCTTTGAGTTACAGAGGAGCAGATGTCTTCTTATTAGCATTTTCCCTTATAAGCAAGGCCAGTTACGAGAATATTCACAAAAAGTGGCTTCCGGAGCTGAAACATTATGCTCCTGGCATCCCCATTGTGCTCGTCGGAACAAAATTAGATTTGAGGGATGACAAGCAGTTCTTGAAGGATCATCCAGGAGCAGCTTCTATAACAACTGCTCAGGGAGAAGAATTAAGGAAAATGATTGGAGCTGTTAGGTACTTAGAGTGCAGCTCCAAAACCCAACAGAATGTGAAGGCAGTGTTTGATACAGCGATAAGGGTAGCTTTGAGGCCACCAAAGGCAAAGAAAAAGATAAAACCATTGAAGACTAAGAGATCAAGAATATGCTTTTTCCTATAA

Protein Analysis

201

Amino Acids

22.39

Weight (kDa)

9.63

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 8 - 176 1.6e-50 Ras family
Roc PF08477 8 - 121 1.6e-23 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45970
fragaria_vesca FvH4_6g26930 FvH4_6g26930
prunus_persica Prupe.3G126500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0128711
rosa_laevigata RLG00000019019
rosa_multiflora Rmu_co8141152.1_g000001
rosa_roxburghii Rroxscaffold_2G00115850
rosa_rugosa Rorug02G0280100
rosa_samantha Rh2BG341300 Rh2DG358000
rosa_wichuraiana Rw2G026950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 201, 263
AccI GTMKAC 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 304
AclWI GGATC 1 cut(s) 399
AcuI CTGAAG 1 cut(s) 112
AfaI GTAC 2 cut(s) 157, 464
AgsI TTSAA 2 cut(s) 388, 571
AjnI CCWGG 2 cut(s) 325, 397
AluBI AGCT 5 cut(s) 310, 407, 455, 477, 530
AluI AGCT 5 cut(s) 310, 407, 455, 477, 530
Alw21I GWGCWC 2 cut(s) 8, 345
AlwI GGATC 1 cut(s) 399
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 4 cut(s) 169, 212, 270, 536
ApeKI GCWGC 2 cut(s) 404, 474
AspLEI GCGC 1 cut(s) 134
BaeI ACNNNNGTAYC 2 cut(s) 139, 172
BbsI GAAGAC 2 cut(s) 232, 578
Bbv12I GWGCWC 2 cut(s) 8, 345
BbvI GCAGC 2 cut(s) 416, 486
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 2 cut(s) 327, 399
BciVI GTATCC 1 cut(s) 172
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 2 cut(s) 405, 475
BlsI GCNGC 2 cut(s) 406, 476
Bme1390I CCNGG 2 cut(s) 327, 399
BmrFI CCNGG 2 cut(s) 327, 399
BmsI GCATC 1 cut(s) 339
BpiI GAAGAC 2 cut(s) 232, 578
BplI GAGNNNNNCTC 2 cut(s) 461, 493
Bpu10I CCTNAGC 2 cut(s) 209, 423
BsaJI CCNNGG 1 cut(s) 166
BsaWI WCCGGW 1 cut(s) 304
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 273
BseAI TCCGGA 1 cut(s) 304
BseBI CCWGG 2 cut(s) 327, 399
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 3 cut(s) 330, 376, 394
BseMII CTCAG 1 cut(s) 437
BseNI ACTGG 1 cut(s) 273
BseRI GAGGAG 1 cut(s) 243
BseXI GCAGC 2 cut(s) 416, 486
BsgI GTGCAG 1 cut(s) 493
BshFI GGCC 4 cut(s) 171, 214, 272, 538
BsiHKAI GWGCWC 2 cut(s) 8, 345
BsiSI CCGG 2 cut(s) 186, 305
BsnI GGCC 4 cut(s) 171, 214, 272, 538
Bsp1286I GDGCHC 2 cut(s) 8, 345
Bsp13I TCCGGA 1 cut(s) 304
Bsp143I GATC 2 cut(s) 391, 581
BspANI GGCC 4 cut(s) 171, 214, 272, 538
BspCNI CTCAG 1 cut(s) 436
BspEI TCCGGA 1 cut(s) 304
BspPI GGATC 1 cut(s) 399
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 1 cut(s) 273
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 2 cut(s) 391, 581
BssT1I CCWWGG 1 cut(s) 166
Bst2UI CCWGG 2 cut(s) 327, 399
Bst4CI ACNGT 3 cut(s) 34, 115, 160
BstDEI CTNAG 4 cut(s) 209, 423, 466, 576
BstF5I GGATG 3 cut(s) 330, 376, 394
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 2 cut(s) 394, 584
BstMBI GATC 2 cut(s) 391, 581
BstMWI GCNNNNNNNGC 1 cut(s) 307
BstNI CCWGG 2 cut(s) 327, 399
BstSCI CCNGG 2 cut(s) 325, 397
BstV1I GCAGC 2 cut(s) 416, 486
BstV2I GAAGAC 2 cut(s) 232, 578
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 4 cut(s) 171, 214, 272, 538
BtsCI GGATG 3 cut(s) 330, 376, 394
BtsI GCAGTG 2 cut(s) 54, 510
BtsIMutI CAGTG 2 cut(s) 54, 510
CfoI GCGC 1 cut(s) 134
Cfr10I RCCGGY 1 cut(s) 185
Csp6I GTAC 2 cut(s) 156, 463
CspCI CAANNNNNGTGG 2 cut(s) 123, 158
CviQI GTAC 2 cut(s) 156, 463
DdeI CTNAG 4 cut(s) 209, 423, 466, 576
DpnI GATC 2 cut(s) 393, 583
DpnII GATC 2 cut(s) 391, 581
Eco130I CCWWGG 1 cut(s) 166
Eco147I AGGCCT 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 112
EcoRII CCWGG 2 cut(s) 325, 397
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FalI AAGNNNNNCTT 4 cut(s) 368, 400, 514, 546
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 405, 475
FokI GGATG 3 cut(s) 317, 381, 383
Fsp4HI GCNGC 2 cut(s) 405, 475
GlaI GCGC 1 cut(s) 133
GluI GCNGC 2 cut(s) 405, 475
HaeIII GGCC 4 cut(s) 171, 214, 272, 538
HapII CCGG 2 cut(s) 186, 305
HhaI GCGC 1 cut(s) 134
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 1 cut(s) 15
HpaII CCGG 2 cut(s) 186, 305
Hpy166II GTNNAC 2 cut(s) 148, 163
Hpy188I TCNGA 2 cut(s) 38, 350
Hpy188III TCNNGA 4 cut(s) 191, 305, 385, 585
Hpy8I GTNNAC 2 cut(s) 148, 163
Hpy99I CGWCG 2 cut(s) 152, 350
HpyAV CCTTC 2 cut(s) 382, 493
HpyCH4III ACNGT 3 cut(s) 34, 115, 160
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 474
HpyF10VI GCNNNNNNNGC 1 cut(s) 307
HpyF3I CTNAG 4 cut(s) 209, 423, 466, 576
HpySE526I ACGT 1 cut(s) 89
HspAI GCGC 1 cut(s) 132
Kpn2I TCCGGA 1 cut(s) 304
Kzo9I GATC 2 cut(s) 391, 581
LmnI GCTCC 7 cut(s) 44, 230, 307, 328, 401, 452, 482
Lsp1109I GCAGC 2 cut(s) 416, 486
LweI GCATC 1 cut(s) 339
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 3 cut(s) 28, 221, 275
MalI GATC 2 cut(s) 393, 583
MboI GATC 2 cut(s) 391, 581
MboII GAAGA 4 cut(s) 206, 232, 443, 583
MhlI GDGCHC 2 cut(s) 8, 345
MluCI AATT 2 cut(s) 356, 434
MmeI TCCRAC 3 cut(s) 16, 134, 328
MnlI CCTC 3 cut(s) 221, 360, 528
MroI TCCGGA 1 cut(s) 304
MseI TTAA 2 cut(s) 21, 437
MspI CCGG 2 cut(s) 186, 305
MspR9I CCNGG 2 cut(s) 327, 399
MvaI CCWGG 2 cut(s) 327, 399
MwoI GCNNNNNNNGC 1 cut(s) 307
NdeII GATC 2 cut(s) 391, 581
NmuCI GTSAC 1 cut(s) 28
PceI AGGCCT 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PfeI GAWTC 1 cut(s) 15
PfoI TCCNGGA 1 cut(s) 397
PkrI GCNGC 2 cut(s) 406, 476
PsiI TTATAA 2 cut(s) 201, 263
Psp6I CCWGG 2 cut(s) 325, 397
PspGI CCWGG 2 cut(s) 325, 397
RsaI GTAC 2 cut(s) 157, 464
RsaNI GTAC 2 cut(s) 156, 463
SalI GTCGAC 1 cut(s) 146
SaqAI TTAA 2 cut(s) 21, 437
SatI GCNGC 2 cut(s) 405, 475
Sau3AI GATC 2 cut(s) 391, 581
ScrFI CCNGG 2 cut(s) 327, 399
SduI GDGCHC 2 cut(s) 8, 345
SetI ASST 8 cut(s) 92, 168, 312, 409, 457, 464, 479, 532
SfaNI GCATC 1 cut(s) 339
Sse9I AATT 2 cut(s) 356, 434
SseBI AGGCCT 1 cut(s) 214
SspI AATATT 1 cut(s) 286
StuI AGGCCT 1 cut(s) 214
StyD4I CCNGG 2 cut(s) 325, 397
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 3 cut(s) 34, 115, 160
TaiI ACGT 1 cut(s) 92
TaqI TCGA 2 cut(s) 120, 147
TasI AATT 2 cut(s) 356, 434
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 2 cut(s) 21, 437
Tru9I TTAA 2 cut(s) 21, 437
TscAI CASTG 2 cut(s) 54, 510
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 2 cut(s) 404, 474
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 2 cut(s) 7, 63
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 2 cut(s) 54, 510
XmiI GTMKAC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.