Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0017482

Physical Location & Seq

Genomic Coordinates Reverse (-)

44887278 .. 44889227

Gene Structure 1950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019019

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAGCACAGCTAGATTCATCAAGTGTGTCACTGTTGGGGATGGAGCTGTTGGAAAAACTTGCATGCTAATCTCTTATACCAGCAATACCTTCCCCACTGATTATGTACCTACAGTGTTTGACAACTTCAGTGCTAATGTGGTGGTGGATGGAAGCACAGTTAACCTTGGATTGTGGGACACTGCAGGACAAGAAGATTACAACCGGCTGAGGCCTCTTAGCTATAGAGGTGCAGATGTGTTCTTGTTGGCCTTCTCTCTCATCAGTAAAGCCAGCTATGAAAATATTGCCAAGAAGTGGATACCTGAATTGAGGCATTATGCCCCAACAGTCCCAATTGTGCTTGTGGGAACAAAACTAGATTTGCGAGACGACAAACAGTATTTGATTGATCATCCTGGTGCTACACCGATAGGAACTACACAGGGTGAGGAACTGAAGAAGACAATTGGTGCTGCAGTCTATATTGAGTGCAGCTCCAAGACTCAGCAGAATGTGAAAGCTGTGTTTGATGCTGCCATCAAAGTTGTTCTGCAGCCCCCTAAACCGAAGAGAAGGAAACGGAAGGCTAGGACGTGTGTATTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418

Pfam Domains

Protein Families

Ras

Protein Analysis

197

Amino Acids

21.66

Weight (kDa)

9.33

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	8 - 178	2.9e-50	Ras family
Roc	PF08477	8 - 121	1.7e-23	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45970
fragaria_vesca	FvH4_6g26930 FvH4_6g26930
prunus_persica	Prupe.3G126500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0128711
rosa_laevigata	RLG00000019019
rosa_multiflora	Rmu_co8141152.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115850
rosa_rugosa	Rorug02G0280100
rosa_samantha	Rh2BG341300 Rh2DG358000
rosa_wichuraiana	Rw2G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	297
AcuI	CTGAAG	2 cut(s)	112, 458
AdeI	CACNNNGTG	1 cut(s)	428
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	297
AflIII	ACRYGT	1 cut(s)	575
AjiI	CACGTC	1 cut(s)	576
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	6 cut(s)	11, 47, 222, 276, 477, 503
AluI	AGCT	6 cut(s)	11, 47, 222, 276, 477, 503
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	363
AoxI	GGCC	2 cut(s)	212, 249
ApeKI	GCWGC	4 cut(s)	455, 474, 515, 535
AsuHPI	GGTGA	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	449
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	209
BbvI	GCAGC	4 cut(s)	442, 486, 502, 547
BccI	CCATC	3 cut(s)	35, 143, 527
BciT130I	CCWGG	1 cut(s)	399
BciVI	GTATCC	1 cut(s)	294
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	3 cut(s)	12, 359, 570
BfmI	CTRYAG	5 cut(s)	111, 183, 223, 456, 533
BfuI	GTATCC	1 cut(s)	294
BisI	GCNGC	4 cut(s)	456, 475, 516, 536
BlsI	GCNGC	4 cut(s)	457, 476, 517, 537
Bme1390I	CCNGG	1 cut(s)	399
BmgBI	CACGTC	1 cut(s)	576
BmrFI	CCNGG	1 cut(s)	399
BmsI	GCATC	1 cut(s)	502
BpiI	GAAGAC	1 cut(s)	449
BplI	GAGNNNNNCTC	2 cut(s)	461, 493
Bpu10I	CCTNAGC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse118I	RCCGGY	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	3 cut(s)	46, 154, 394
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	2 cut(s)	200, 500
BseXI	GCAGC	4 cut(s)	442, 486, 502, 547
BsgI	GTGCAG	2 cut(s)	252, 493
BshFI	GGCC	2 cut(s)	214, 251
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	2 cut(s)	191, 317
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	1 cut(s)	363
BsmBI	CGTCTC	1 cut(s)	363
BsmFI	GGGAC	2 cut(s)	191, 317
BsnI	GGCC	2 cut(s)	214, 251
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	391
BspANI	GGCC	2 cut(s)	214, 251
BspCNI	CTCAG	2 cut(s)	201, 499
BspMAI	CTGCAG	3 cut(s)	187, 460, 537
BsrFI	RCCGGY	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	391
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	5 cut(s)	34, 115, 160, 331, 381
Bst6I	CTCTTC	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	65, 274
BstDEI	CTNAG	3 cut(s)	209, 218, 486
BstF5I	GGATG	3 cut(s)	46, 154, 394
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	1 cut(s)	391
BstNI	CCWGG	1 cut(s)	399
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	5 cut(s)	111, 183, 223, 456, 533
BstV1I	GCAGC	4 cut(s)	442, 486, 502, 547
BstV2I	GAAGAC	1 cut(s)	449
BsuI	GTATCC	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	214, 251
BtrI	CACGTC	1 cut(s)	576
BtsCI	GGATG	3 cut(s)	46, 154, 394
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	5 cut(s)	30, 96, 120, 136, 180
Cac8I	GCNNGC	2 cut(s)	65, 274
Cfr10I	RCCGGY	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	1 cut(s)	64
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	3 cut(s)	209, 218, 486
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
DraIII	CACNNNGTG	1 cut(s)	428
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Eco130I	CCWWGG	1 cut(s)	166
Eco147I	AGGCCT	1 cut(s)	214
Eco57I	CTGAAG	2 cut(s)	112, 458
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	363
FaeI	CATG	1 cut(s)	67
FaiI	YATR	7 cut(s)	65, 78, 105, 225, 279, 321, 465
FaqI	GGGAC	2 cut(s)	191, 317
FatI	CATG	1 cut(s)	63
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	4 cut(s)	456, 475, 516, 536
FokI	GGATG	3 cut(s)	53, 161, 381
Fsp4HI	GCNGC	4 cut(s)	456, 475, 516, 536
FspBI	CTAG	3 cut(s)	12, 359, 570
GluI	GCNGC	4 cut(s)	456, 475, 516, 536
HaeIII	GGCC	2 cut(s)	214, 251
HapII	CCGG	1 cut(s)	205
Hin1II	CATG	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	2 cut(s)	15, 484
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	4 cut(s)	100, 262, 549, 559
HpyCH4III	ACNGT	5 cut(s)	34, 115, 160, 331, 381
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	6 cut(s)	63, 185, 233, 458, 474, 535
HpyF3I	CTNAG	3 cut(s)	209, 218, 486
HpySE526I	ACGT	1 cut(s)	575
Hsp92II	CATG	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	391
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	2 cut(s)	44, 482
LpnPI	CCDG	8 cut(s)	94, 171, 218, 286, 318, 384, 410, 411
Lsp1109I	GCAGC	4 cut(s)	442, 486, 502, 547
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	3 cut(s)	12, 359, 570
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	4 cut(s)	206, 451, 454, 562
MfeI	CAATTG	2 cut(s)	336, 447
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	308, 336, 447
MlyI	GAGTC	1 cut(s)	478
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	5 cut(s)	204, 221, 225, 306, 424
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	399
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	399
MunI	CAATTG	2 cut(s)	336, 447
MvaI	CCWGG	1 cut(s)	399
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	67
PaeI	GCATGC	1 cut(s)	67
PceI	AGGCCT	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	15
PflMI	CCANNNNNTGG	1 cut(s)	297
PkrI	GCNGC	4 cut(s)	457, 476, 517, 537
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PstI	CTGCAG	3 cut(s)	187, 460, 537
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	4 cut(s)	456, 475, 516, 536
Sau3AI	GATC	1 cut(s)	391
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	502
SfcI	CTRYAG	5 cut(s)	111, 183, 223, 456, 533
SmiMI	CAYNNNNRTG	1 cut(s)	399
SphI	GCATGC	1 cut(s)	67
Sse9I	AATT	3 cut(s)	308, 336, 447
SseBI	AGGCCT	1 cut(s)	214
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	3 cut(s)	12, 359, 570
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	5 cut(s)	34, 115, 160, 331, 381
TaiI	ACGT	1 cut(s)	578
TasI	AATT	3 cut(s)	308, 336, 447
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	5 cut(s)	37, 103, 120, 136, 187
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	4 cut(s)	455, 474, 515, 535
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	7, 294
TspGWI	ACGGA	1 cut(s)	577
TspRI	CASTG	5 cut(s)	37, 103, 120, 136, 187
Van91I	CCANNNNNTGG	1 cut(s)	297
XceI	RCATGY	1 cut(s)	67
XspI	CTAG	3 cut(s)	12, 359, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.