Rroxscaffold_2G00115850
ERF Family

Belongs to the small GTPase superfamily. Rho family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
42393168 .. 42395404
2237 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00115850.1

Sequence Viewer

Length: 561 bp
ATGAGCACAGCTAGGTTCATCAAGTGTGTCACTGTTGGGGATGGAGCTGTTGGAAAAACTTGCATGCTAATCTCTTATACCAGCAATACCTTCCCCACTGATTATGTGCCTACAGTGTTTGACAACTTCAGTGCTAATGTGGTGGTGGATGGAAGCACAGTTAACCTTGGATTGTGGGACACTGCAGGACAAGAAGATTACAACCGGCTGAGGCCTCTTAGCTATAGAGGTGCAGATGTGTTCTTGTTGGCCTTCTCTCTCATCAGTAAAGCCAGCTATGAAAATATTGCCAAGAAGTGGATACCTGAATTGAGGCATTATGCCCCAACAGTCCCAATTGTGCTTGTGGGAACAAAACTAGATTTGCGAGACGACAAACAGTATTTGATTGATCATCCTGGTGCTACACCGATAGGAACTACACAGGCAATCTATATTGAGTGCAGCTCCAAGACTCAGCAGAATGTGAAAGCTGTGTTTGATGCTGCCATCAAAGTTGTTCTGCAGCCCCCTAAACCGAAGAGAAGGAAACGGAAGGCTCGGACGTGTGTATTTCTGTAA

Protein Analysis

186

Amino Acids

20.65

Weight (kDa)

9.37

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 8 - 168 1.7e-48 Ras family
Roc PF08477 8 - 121 1.4e-23 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45970
fragaria_vesca FvH4_6g26930 FvH4_6g26930
prunus_persica Prupe.3G126500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0128711
rosa_laevigata RLG00000019019
rosa_multiflora Rmu_co8141152.1_g000001
rosa_roxburghii Rroxscaffold_2G00115850
rosa_rugosa Rorug02G0280100
rosa_samantha Rh2BG341300 Rh2DG358000
rosa_wichuraiana Rw2G026950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 297
AcuI CTGAAG 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 297
AflIII ACRYGT 1 cut(s) 545
AjiI CACGTC 1 cut(s) 546
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 6 cut(s) 11, 47, 222, 276, 447, 473
AluI AGCT 6 cut(s) 11, 47, 222, 276, 447, 473
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 363
AoxI GGCC 2 cut(s) 212, 249
ApeKI GCWGC 3 cut(s) 444, 485, 505
Bbv12I GWGCWC 1 cut(s) 8
BbvCI CCTCAGC 1 cut(s) 209
BbvI GCAGC 3 cut(s) 456, 472, 517
BccI CCATC 3 cut(s) 35, 143, 497
BciT130I CCWGG 1 cut(s) 399
BciVI GTATCC 1 cut(s) 294
BclI TGATCA 1 cut(s) 391
BcoDI GTCTC 1 cut(s) 363
BfaI CTAG 2 cut(s) 12, 359
BfmI CTRYAG 4 cut(s) 111, 183, 223, 503
BfuI GTATCC 1 cut(s) 294
BisI GCNGC 3 cut(s) 445, 486, 506
BlsI GCNGC 3 cut(s) 446, 487, 507
Bme1390I CCNGG 1 cut(s) 399
BmgBI CACGTC 1 cut(s) 546
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 1 cut(s) 472
BplI GAGNNNNNCTC 2 cut(s) 431, 463
Bpu10I CCTNAGC 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse118I RCCGGY 1 cut(s) 204
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 3 cut(s) 46, 154, 394
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 2 cut(s) 200, 470
BseXI GCAGC 3 cut(s) 456, 472, 517
BsgI GTGCAG 2 cut(s) 252, 463
BshFI GGCC 2 cut(s) 214, 251
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 205
BslFI GGGAC 2 cut(s) 191, 317
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 363
BsmBI CGTCTC 1 cut(s) 363
BsmFI GGGAC 2 cut(s) 191, 317
BsnI GGCC 2 cut(s) 214, 251
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 391
BspANI GGCC 2 cut(s) 214, 251
BspCNI CTCAG 2 cut(s) 201, 469
BspMAI CTGCAG 2 cut(s) 187, 507
BsrFI RCCGGY 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 1 cut(s) 391
BssT1I CCWWGG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 5 cut(s) 34, 115, 160, 331, 381
Bst6I CTCTTC 1 cut(s) 515
BstC8I GCNNGC 2 cut(s) 65, 274
BstDEI CTNAG 3 cut(s) 209, 218, 456
BstF5I GGATG 3 cut(s) 46, 154, 394
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 1 cut(s) 363
BstMBI GATC 1 cut(s) 391
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 397
BstSFI CTRYAG 4 cut(s) 111, 183, 223, 503
BstV1I GCAGC 3 cut(s) 456, 472, 517
BsuI GTATCC 1 cut(s) 294
BsuRI GGCC 2 cut(s) 214, 251
BtrI CACGTC 1 cut(s) 546
BtsCI GGATG 3 cut(s) 46, 154, 394
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 5 cut(s) 30, 96, 120, 136, 180
Cac8I GCNNGC 2 cut(s) 65, 274
Cfr10I RCCGGY 1 cut(s) 204
CviAII CATG 1 cut(s) 64
DdeI CTNAG 3 cut(s) 209, 218, 456
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
Eco130I CCWWGG 1 cut(s) 166
Eco147I AGGCCT 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 363
FaeI CATG 1 cut(s) 67
FaiI YATR 7 cut(s) 65, 78, 105, 225, 279, 321, 435
FaqI GGGAC 2 cut(s) 191, 317
FatI CATG 1 cut(s) 63
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 3 cut(s) 445, 486, 506
FokI GGATG 3 cut(s) 53, 161, 381
Fsp4HI GCNGC 3 cut(s) 445, 486, 506
FspBI CTAG 2 cut(s) 12, 359
GluI GCNGC 3 cut(s) 445, 486, 506
HaeIII GGCC 2 cut(s) 214, 251
HapII CCGG 1 cut(s) 205
Hin1II CATG 1 cut(s) 67
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 1 cut(s) 454
HpaI GTTAAC 1 cut(s) 163
HpaII CCGG 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 543
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 4 cut(s) 100, 262, 519, 529
HpyCH4III ACNGT 5 cut(s) 34, 115, 160, 331, 381
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 5 cut(s) 63, 185, 233, 444, 505
HpyF3I CTNAG 3 cut(s) 209, 218, 456
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 391
KspAI GTTAAC 1 cut(s) 163
Kzo9I GATC 1 cut(s) 391
LmnI GCTCC 2 cut(s) 44, 452
LpnPI CCDG 8 cut(s) 94, 171, 218, 286, 318, 384, 410, 411
Lsp1109I GCAGC 3 cut(s) 456, 472, 517
LweI GCATC 1 cut(s) 472
MaeI CTAG 2 cut(s) 12, 359
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 1 cut(s) 28
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 2 cut(s) 206, 532
MfeI CAATTG 1 cut(s) 336
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 2 cut(s) 308, 336
MlyI GAGTC 1 cut(s) 448
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 4 cut(s) 204, 221, 225, 306
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 399
MspI CCGG 1 cut(s) 205
MspR9I CCNGG 1 cut(s) 399
MunI CAATTG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 399
NdeII GATC 1 cut(s) 391
NlaIII CATG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 28
NspI RCATGY 1 cut(s) 67
PaeI GCATGC 1 cut(s) 67
PceI AGGCCT 1 cut(s) 214
PflMI CCANNNNNTGG 1 cut(s) 297
PkrI GCNGC 3 cut(s) 446, 487, 507
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PstI CTGCAG 2 cut(s) 187, 507
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 3 cut(s) 445, 486, 506
Sau3AI GATC 1 cut(s) 391
SchI GAGTC 1 cut(s) 448
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 1 cut(s) 472
SfcI CTRYAG 4 cut(s) 111, 183, 223, 503
SmiMI CAYNNNNRTG 1 cut(s) 399
SphI GCATGC 1 cut(s) 67
Sse9I AATT 2 cut(s) 308, 336
SseBI AGGCCT 1 cut(s) 214
SspI AATATT 1 cut(s) 286
SspMI CTAG 2 cut(s) 12, 359
StuI AGGCCT 1 cut(s) 214
StyD4I CCNGG 1 cut(s) 397
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 5 cut(s) 34, 115, 160, 331, 381
TaiI ACGT 1 cut(s) 548
TasI AATT 2 cut(s) 308, 336
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 5 cut(s) 37, 103, 120, 136, 187
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 3 cut(s) 444, 485, 505
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 2 cut(s) 7, 294
TspGWI ACGGA 1 cut(s) 547
TspRI CASTG 5 cut(s) 37, 103, 120, 136, 187
Van91I CCANNNNNTGG 1 cut(s) 297
XceI RCATGY 1 cut(s) 67
XspI CTAG 2 cut(s) 12, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.