Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010071

Physical Location & Seq

Genomic Coordinates Reverse (-)

18694316 .. 18695856

Gene Structure 1541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G46100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGGTAGCAAAGTGATGATGTTCAAGTGGTCAAAGAACATCACGCCTTCACAGGTTATCAAACTGATGCGAGCTGAAAAAGATGTGGAGAAGTCTATGGCAGTTTTTGATTCCGCAACGGCGGAATACGCAAATGGGTACGTACATGATCAGAGTTCTTTTGGTTATATGGTCTTGAGGTTGGTCTCTGCTAATAAGTTCAAAGCAGCTGAAGATCTGATTGTTAGAATGAAGATTGAGAATTGTGTTGTTAGTGAAGATATATTGCTTTCGATATGTCGAGGGTATGGTCGGGTTCATAGGCCGTTTGATTCTTTAAGGGTTTTTCACAAAATGAAGGATTTTGATTGTGATCCTAGCCAGAAGGCTTATGTCACTGTTCTTGCCATTCTCGTGGAAGAGAATCAGTTAAATTTGGCATTTAAGTTTTACAAGAATATGAGAGAGATTGGTTTGCCTCCTACTGTGGCATCTCTCAATGTTTTGATTAAAGCTCTTTGCAGAAATGACGGAACTGTGGATGCTGGTCTTAAGATTTTTCTTGAAATGCCTAAGAGAGGGTGTGATCCGGATTCTTACACATATGGAACCTTGATTAGTGGTTTGTGTAGGTTCGGAAGGATAGATGAGGCGAAGAAGTTGTTTACAGAGATGGTTGAGAAAGACTGTGCACCAACTGTTGTTACCTATACTTCTCTGATTAACGGTTTGTGTGGATCGAAAAATGTTGATGAAGCTATGAGATATCTAGAAGAGATGAAAAGTAAAGGCATTGAGCCGAATGTTTTCACGTACAGTTCTTTGATGGACGGTCTTTGCAAAGATGGGCGTTCTTTGCAAGCCATGGAACTATTTGAGATGATGATGGCTAGAGGCTGCAGGCCAAACATGGTAACGTATACCACTTTGATCACTGGTCTCTGTAAGGAGCAGAAGATTCAAGAAGCCGTTGAACTTCTTGATAGAATGAATCTTCAGGGTTTGAAACCTGATGCTGGATTATATGGGAAAGTAATCAGTGGGTTCTGTGCTATTAGTAAGTTTCGTGAAGCTGCCAATTTCCTTGACGAGATGATTCTTGGAGGAATTACTCCAAATCGTTTAACCTGGAACATCCATGTTAAGACAAGTAATGAAGTAGTCCGAGGTCTTTGTGCAAACTATCCAAGTCGTGCATTTACTCTATATCTTAGCATGAGGAGTAGAGGAATCTCGGTTGAGGTTGAAACACTAGAATCTTTGGTGAAGTGTTTGTGCAAAAAGGGTGAATTCCAGAAAGCTGTTCAATTAGTCGATGAAATAGTGACTGATGGGTGTATTCCAAGTAAAGGAACATGGAAGCTACTTATAGGTCACACATTGGATAAAACGATTGTAGGAGAGGCTTCAGATACTCTTCTCAGAGATTTGGATATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

472

Amino Acids

52.88

Weight (kDa)

8.04

Isoelectric Point (pI)

27.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	119 - 168	8.1e-09	PPR repeat family
PPR_2	PF13041	160 - 204	2e-13	PPR repeat family
PPR_long	PF17177	172 - 277	5.7e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	178 - 235	1.5e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	186 - 219	4.7e-15	PPR repeat
PPR	PF01535	193 - 223	4.7e-09	PPR repeat
PPR_2	PF13041	197 - 238	2.9e-15	PPR repeat family
PPR_1	PF12854	221 - 254	2.4e-11	PPR repeat
PPR_2	PF13041	225 - 274	1.5e-20	PPR repeat family
PPR_3	PF13812	227 - 270	6.9e-10	Pentatricopeptide repeat domain
PPR	PF01535	228 - 258	9.7e-09	PPR repeat
PPR_3	PF13812	250 - 305	3.8e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	256 - 288	5.8e-12	PPR repeat
PPR	PF01535	263 - 293	1.3e-07	PPR repeat
PPR_2	PF13041	267 - 309	2.6e-14	PPR repeat family
PPR_3	PF13812	284 - 335	2.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	291 - 323	2.9e-13	PPR repeat
PPR_2	PF13041	298 - 332	8e-09	PPR repeat family
PPR	PF01535	298 - 327	1.2e-06	PPR repeat
PPR_2	PF13041	330 - 373	7.7e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46100
fragaria_vesca	FvH4_3g08550 FvH4_3g08550 FvH4_4g07830 FvH4_4g07830
malus_domestica	MD10G1288900.v1.1
prunus_persica	Prupe.4G052800_v2.0.a1 Prupe.4G052800_v2.0.a1 Prupe.4G052800_v2.0.a1 Prupe.4G052800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0009291
rosa_laevigata	RLG00000031645
rosa_multiflora	Rmu_sc0006233.1_g000011
rosa_roxburghii	Rroxscaffold_1G00066790 Rroxscaffold_1G00067490
rosa_rugosa	Rorug04G0441700
rosa_samantha	Rh5AG072000 Rh5BG068500 Rh5CG080900 Rh5DG068700
rosa_wichuraiana	Rw5G006730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	899
AccIII	TCCGGA	1 cut(s)	568
AciI	CCGC	2 cut(s)	114, 122
AclWI	GGATC	3 cut(s)	347, 560, 724
AcsI	RAATTY	2 cut(s)	412, 1268
AcuI	CTGAAG	3 cut(s)	231, 959, 1371
AfaI	GTAC	3 cut(s)	140, 144, 794
AfiI	CCNNNNNNNGG	3 cut(s)	557, 995, 1328
AflII	CTTAAG	1 cut(s)	530
AgsI	TTSAA	8 cut(s)	25, 202, 545, 941, 953, 985, 1226, 1286
AjnI	CCWGG	1 cut(s)	1106
AluBI	AGCT	7 cut(s)	74, 209, 494, 737, 1052, 1280, 1342
AluI	AGCT	7 cut(s)	74, 209, 494, 737, 1052, 1280, 1342
Alw21I	GWGCWC	1 cut(s)	673
Alw26I	GTCTC	2 cut(s)	190, 923
Alw44I	GTGCAC	1 cut(s)	669
AlwI	GGATC	3 cut(s)	347, 560, 724
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	2 cut(s)	302, 881
ApaLI	GTGCAC	1 cut(s)	669
ApeKI	GCWGC	3 cut(s)	206, 876, 1052
ApoI	RAATTY	2 cut(s)	412, 1268
Asp700I	GAANNNNTTC	1 cut(s)	785
AsuHPI	GGTGA	2 cut(s)	1255, 1277
BaeGI	GKGCMC	1 cut(s)	673
BauI	CACGAG	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	673
BbvI	GCAGC	3 cut(s)	218, 863, 1039
BccI	CCATC	5 cut(s)	646, 799, 818, 859, 1304
BceAI	ACGGC	3 cut(s)	135, 289, 932
BciT130I	CCWGG	1 cut(s)	1108
BclI	TGATCA	2 cut(s)	148, 909
BcoDI	GTCTC	2 cut(s)	190, 923
BfaI	CTAG	4 cut(s)	357, 749, 870, 1232
BfmI	CTRYAG	1 cut(s)	877
BfrI	CTTAAG	1 cut(s)	530
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	3 cut(s)	207, 877, 1053
BlsI	GCNGC	3 cut(s)	208, 878, 1054
Bme1390I	CCNGG	1 cut(s)	1108
BmiI	GGNNCC	1 cut(s)	589
BmrFI	CCNGG	1 cut(s)	1108
BmsI	GCATC	4 cut(s)	57, 479, 511, 982
BpuEI	CTTGAG	1 cut(s)	196
BsaAI	YACGTR	2 cut(s)	142, 792
BsaBI	GATNNNNATC	1 cut(s)	351
BsaI	GGTCTC	2 cut(s)	190, 923
BsaJI	CCNNGG	2 cut(s)	843, 1144
BsaWI	WCCGGW	1 cut(s)	568
Bsc4I	CCNNNNNNNGG	3 cut(s)	557, 995, 1328
Bse1I	ACTGG	1 cut(s)	919
Bse8I	GATNNNNATC	1 cut(s)	351
BseAI	TCCGGA	1 cut(s)	568
BseBI	CCWGG	1 cut(s)	1108
BseDI	CCNNGG	2 cut(s)	843, 1144
BseGI	GGATG	2 cut(s)	526, 1113
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	3 cut(s)	557, 995, 1328
BseMII	CTCAG	1 cut(s)	1414
BseNI	ACTGG	1 cut(s)	919
BseRI	GAGGAG	1 cut(s)	1213
BseSI	GKGCMC	1 cut(s)	673
BseXI	GCAGC	3 cut(s)	218, 863, 1039
BshFI	GGCC	2 cut(s)	304, 883
BsiHKAI	GWGCWC	1 cut(s)	673
BsiSI	CCGG	1 cut(s)	569
BslI	CCNNNNNNNGG	3 cut(s)	557, 995, 1328
BsmAI	GTCTC	2 cut(s)	190, 923
BsnI	GGCC	2 cut(s)	304, 883
Bso31I	GGTCTC	2 cut(s)	190, 923
Bsp1286I	GDGCHC	1 cut(s)	673
Bsp13I	TCCGGA	1 cut(s)	568
Bsp143I	GATC	6 cut(s)	148, 214, 352, 565, 716, 909
Bsp19I	CCATGG	1 cut(s)	843
BspACI	CCGC	2 cut(s)	114, 122
BspANI	GGCC	2 cut(s)	304, 883
BspCNI	CTCAG	1 cut(s)	1413
BspEI	TCCGGA	1 cut(s)	568
BspLI	GGNNCC	1 cut(s)	589
BspMAI	CTGCAG	1 cut(s)	881
BspPI	GGATC	3 cut(s)	347, 560, 724
BspTI	CTTAAG	1 cut(s)	530
BspTNI	GGTCTC	2 cut(s)	190, 923
BsrI	ACTGG	1 cut(s)	919
BssECI	CCNNGG	2 cut(s)	843, 1144
BssMI	GATC	6 cut(s)	148, 214, 352, 565, 716, 909
BssNAI	GTATAC	1 cut(s)	900
BssSI	CACGAG	1 cut(s)	392
BssT1I	CCWWGG	1 cut(s)	843
Bst1107I	GTATAC	1 cut(s)	900
Bst2BI	CACGAG	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	1108
Bst4CI	ACNGT	8 cut(s)	379, 466, 517, 668, 679, 707, 797, 812
Bst6I	CTCTTC	3 cut(s)	393, 747, 1401
BstAFI	CTTAAG	1 cut(s)	530
BstBAI	YACGTR	2 cut(s)	142, 792
BstC8I	GCNNGC	3 cut(s)	72, 840, 881
BstDEI	CTNAG	3 cut(s)	552, 1190, 1400
BstDSI	CCRYGG	1 cut(s)	843
BstENI	CCTNNNNNAGG	1 cut(s)	555
BstF5I	GGATG	2 cut(s)	526, 1113
BstKTI	GATC	6 cut(s)	151, 217, 355, 568, 719, 912
BstMAI	GTCTC	2 cut(s)	190, 923
BstMBI	GATC	6 cut(s)	148, 214, 352, 565, 716, 909
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 835
BstNI	CCWGG	1 cut(s)	1108
BstSCI	CCNGG	1 cut(s)	1106
BstSFI	CTRYAG	1 cut(s)	877
BstSLI	GKGCMC	1 cut(s)	673
BstSNI	TACGTA	1 cut(s)	142
BstV1I	GCAGC	3 cut(s)	218, 863, 1039
BstX2I	RGATCY	1 cut(s)	214
BstXI	CCANNNNNNTGG	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	214
BstZ17I	GTATAC	1 cut(s)	900
BsuRI	GGCC	2 cut(s)	304, 883
BtgI	CCRYGG	1 cut(s)	843
BtsCI	GGATG	2 cut(s)	526, 1113
BtsIMutI	CAGTG	3 cut(s)	375, 912, 1024
Cac8I	GCNNGC	3 cut(s)	72, 840, 881
Csp6I	GTAC	3 cut(s)	139, 143, 793
CviAII	CATG	6 cut(s)	146, 844, 889, 1118, 1195, 1335
CviQI	GTAC	3 cut(s)	139, 143, 793
DdeI	CTNAG	3 cut(s)	552, 1190, 1400
DpnI	GATC	6 cut(s)	150, 216, 354, 567, 718, 911
DpnII	GATC	6 cut(s)	148, 214, 352, 565, 716, 909
Eam1104I	CTCTTC	3 cut(s)	393, 747, 1401
EarI	CTCTTC	3 cut(s)	393, 747, 1401
EciI	GGCGGA	1 cut(s)	137
Eco105I	TACGTA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	843
Eco31I	GGTCTC	2 cut(s)	190, 923
Eco32I	GATATC	2 cut(s)	746, 1414
Eco57I	CTGAAG	3 cut(s)	231, 959, 1371
EcoNI	CCTNNNNNAGG	1 cut(s)	555
EcoRI	GAATTC	1 cut(s)	1268
EcoRII	CCWGG	1 cut(s)	1106
EcoRV	GATATC	2 cut(s)	746, 1414
EcoT14I	CCWWGG	1 cut(s)	843
ErhI	CCWWGG	1 cut(s)	843
FaeI	CATG	6 cut(s)	149, 847, 892, 1121, 1198, 1338
FatI	CATG	6 cut(s)	145, 843, 888, 1117, 1194, 1334
FauNDI	CATATG	1 cut(s)	583
FbaI	TGATCA	2 cut(s)	148, 909
FblI	GTMKAC	1 cut(s)	899
Fnu4HI	GCNGC	3 cut(s)	207, 877, 1053
FokI	GGATG	2 cut(s)	533, 1100
Fsp4HI	GCNGC	3 cut(s)	207, 877, 1053
FspBI	CTAG	4 cut(s)	357, 749, 870, 1232
GluI	GCNGC	3 cut(s)	207, 877, 1053
HaeIII	GGCC	2 cut(s)	304, 883
HapII	CCGG	1 cut(s)	569
Hin1II	CATG	6 cut(s)	149, 847, 892, 1121, 1198, 1338
HinfI	GANTC	9 cut(s)	110, 311, 403, 572, 937, 970, 1075, 1209, 1235
HpaII	CCGG	1 cut(s)	569
HphI	GGTGA	2 cut(s)	1255, 1277
Hpy166II	GTNNAC	3 cut(s)	645, 671, 900
Hpy188I	TCNGA	7 cut(s)	153, 219, 617, 699, 1145, 1390, 1403
Hpy188III	TCNNGA	8 cut(s)	175, 542, 569, 749, 941, 959, 1046, 1273
Hpy8I	GTNNAC	3 cut(s)	645, 671, 900
HpyAV	CCTTC	4 cut(s)	57, 331, 358, 612
HpyCH4III	ACNGT	8 cut(s)	379, 466, 517, 668, 679, 707, 797, 812
HpyCH4IV	ACGT	3 cut(s)	141, 791, 896
HpyCH4V	TGCA	8 cut(s)	501, 671, 819, 838, 879, 1157, 1175, 1257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 835
HpyF3I	CTNAG	3 cut(s)	552, 1190, 1400
HpySE526I	ACGT	3 cut(s)	141, 791, 896
Hsp92II	CATG	6 cut(s)	149, 847, 892, 1121, 1198, 1338
Kpn2I	TCCGGA	1 cut(s)	568
Ksp22I	TGATCA	2 cut(s)	148, 909
Kzo9I	GATC	6 cut(s)	148, 214, 352, 565, 716, 909
LmnI	GCTCC	1 cut(s)	928
Lsp1109I	GCAGC	3 cut(s)	218, 863, 1039
LweI	GCATC	4 cut(s)	57, 479, 511, 982
MaeI	CTAG	4 cut(s)	357, 749, 870, 1232
MaeII	ACGT	3 cut(s)	141, 791, 896
MaeIII	GTNAC	5 cut(s)	373, 682, 892, 1303, 1352
MalI	GATC	6 cut(s)	150, 216, 354, 567, 718, 911
MboI	GATC	6 cut(s)	148, 214, 352, 565, 716, 909
MboII	GAAGA	9 cut(s)	224, 244, 269, 410, 646, 764, 946, 965, 1388
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	673
MluCI	AATT	6 cut(s)	241, 412, 1057, 1086, 1268, 1286
MroI	TCCGGA	1 cut(s)	568
MroXI	GAANNNNTTC	1 cut(s)	785
MseI	TTAA	8 cut(s)	317, 410, 423, 489, 531, 702, 1103, 1122
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	209
MspCI	CTTAAG	1 cut(s)	530
MspI	CCGG	1 cut(s)	569
MspR9I	CCNGG	1 cut(s)	1108
MvaI	CCWGG	1 cut(s)	1108
MwoI	GCNNNNNNNGC	2 cut(s)	128, 835
NcoI	CCATGG	1 cut(s)	843
NdeI	CATATG	1 cut(s)	583
NdeII	GATC	6 cut(s)	148, 214, 352, 565, 716, 909
NlaIII	CATG	6 cut(s)	149, 847, 892, 1121, 1198, 1338
NlaIV	GGNNCC	1 cut(s)	589
NmuCI	GTSAC	3 cut(s)	373, 1303, 1352
PdmI	GAANNNNTTC	1 cut(s)	785
PfeI	GAWTC	9 cut(s)	110, 311, 403, 572, 937, 970, 1075, 1209, 1235
PkrI	GCNGC	3 cut(s)	208, 878, 1054
Ppu21I	YACGTR	2 cut(s)	142, 792
Psp6I	CCWGG	1 cut(s)	1106
PspGI	CCWGG	1 cut(s)	1106
PspN4I	GGNNCC	1 cut(s)	589
PstI	CTGCAG	1 cut(s)	881
PsuI	RGATCY	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	3 cut(s)	140, 144, 794
RsaNI	GTAC	3 cut(s)	139, 143, 793
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	8 cut(s)	317, 410, 423, 489, 531, 702, 1103, 1122
SatI	GCNGC	3 cut(s)	207, 877, 1053
Sau3AI	GATC	6 cut(s)	148, 214, 352, 565, 716, 909
ScrFI	CCNGG	1 cut(s)	1108
SduI	GDGCHC	1 cut(s)	673
SfaNI	GCATC	4 cut(s)	57, 479, 511, 982
SfcI	CTRYAG	1 cut(s)	877
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	2 cut(s)	175, 530
SmoI	CTYRAG	2 cut(s)	175, 530
SnaBI	TACGTA	1 cut(s)	142
Sse9I	AATT	6 cut(s)	241, 412, 1057, 1086, 1268, 1286
SsiI	CCGC	2 cut(s)	114, 122
SspMI	CTAG	4 cut(s)	357, 749, 870, 1232
StyD4I	CCNGG	1 cut(s)	1106
StyI	CCWWGG	1 cut(s)	843
TaaI	ACNGT	8 cut(s)	379, 466, 517, 668, 679, 707, 797, 812
TaiI	ACGT	3 cut(s)	144, 794, 899
TaqI	TCGA	4 cut(s)	272, 280, 719, 1293
TasI	AATT	6 cut(s)	241, 412, 1057, 1086, 1268, 1286
TfiI	GAWTC	9 cut(s)	110, 311, 403, 572, 937, 970, 1075, 1209, 1235
Tru1I	TTAA	8 cut(s)	317, 410, 423, 489, 531, 702, 1103, 1122
Tru9I	TTAA	8 cut(s)	317, 410, 423, 489, 531, 702, 1103, 1122
TscAI	CASTG	3 cut(s)	382, 919, 1024
TseFI	GTSAC	3 cut(s)	373, 1303, 1352
TseI	GCWGC	3 cut(s)	206, 876, 1052
Tsp45I	GTSAC	3 cut(s)	373, 1303, 1352
TspDTI	ATGAA	8 cut(s)	245, 287, 350, 747, 773, 983, 1149, 1311
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	3 cut(s)	382, 919, 1024
Vha464I	CTTAAG	1 cut(s)	530
VneI	GTGCAC	1 cut(s)	669
XagI	CCTNNNNNAGG	1 cut(s)	555
XapI	RAATTY	2 cut(s)	412, 1268
XbaI	TCTAGA	1 cut(s)	748
XmiI	GTMKAC	1 cut(s)	899
XmnI	GAANNNNTTC	1 cut(s)	785
XspI	CTAG	4 cut(s)	357, 749, 870, 1232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.