Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003212

Physical Location & Seq

Genomic Coordinates Forward (+)

59828103 .. 59835768

Gene Structure 7666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0441700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGACCATTTCGGAGAGAAAATGGAGTTGCTGAAACTCTCCAAGTTCAAACTCCAGCTCCGATCTCTCATCACCGAAGTCCGAGAACTCCGAGAAAGGGAACGCTCCGCCACCGAACAACTTCATCTTCTTGTTCAGAAACAGAAGCAAACCGATGAAGATTACGGCCGGAAGTTGCAGGAATTTCAAGCCGAATTAGCTTCCTCCAATGAACTCCGACAAAAACTCCAAAGAGAGGTTAGTTACCTTCAGAATGACAATTCCTTGCTGGAGAACAAGCAAAAAGAGCTGAAGGCGACGATTCATAGCCTACTTCAGTCTAAGGAAACTTTCGTCACTGCTTATGAGGAATCCACCTGTGAGATGAAACGTGCAATTCAATGCAGAGACAGAAAAATTGCTGTCCTATCAGAGAAGATAAGTTCGCATCTATTGTTGTTTGATTCGATAGAAAAGGAGGCAATTTCCGTAAAGAAAGTTGTGGCTGATGTGCAACACCTTGTGAGTGAGAAAGAGGAAGTAGTGGCTGGGTTAAAGAGCAAAATGGATACTGTTTCCACATTTGAGAAAGTATTTATTGAGAAGATCTGTGACCAGGAAAAAGAACTGAGAAGGTATAGAGATGAGACTCGGAGAAAGGATAAAGTCATTTCGGAACTAGAGTCACAGCTCGAGGCAGCAAAAATTAATAATAGCAACAAGACTCAAATGGAAGAGCTTCAGAAAATTATATCAGCAAAGGATGTGGTCATACAGAACTTGATTTCAGAAAAACAGGGATTGCATTTTGAAGTTGGAAGTTTGGGCACAATATTAAGGAAGATTCAAGACACTATTAGAAGTATGAATCAAGAGGACAAACGGGTATTCTCCTCAATATTGGAACACCAACAAGGATGCAATATGATTTTGGTGAAGGAAGATAATAGGATTGAAGATGCAATCCAGAAAAATATAGACAAAGCTCATGAAAAGGATTACAGGGCAGCCGCAGGAGGAAACACAGCTTCACCTCTATCTCAAAAGTGCAAGTCAGTTAGCAACAACTTAGAAGAGAACAATAACTTGGACTCCTGTGTGTCAGAGACAGCTTCGTCAAACCCTCAATTGCGAGCTACTGTCCTAAGTGTTCTATCAAATGATATAAAGGGTAACTGCACAGTATCAACGCATATAGAATCAGAATGCTCATCTACTCAAGCTGAAATCTCACACAATCAAAATGAGGTTCATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

412

Amino Acids

47.09

Weight (kDa)

6.08

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46110 AT5G46110 AT5G46110 AT5G46110
fragaria_vesca	FvH4_3g08560 FvH4_3g08560 FvH4_4g30170
malus_domestica	MD05G1310100.v1.1 MD10G1289000.v1.1 MD16G1061900.v1.1
prunus_persica	Prupe.1G286000_v2.0.a1 Prupe.4G052700_v2.0.a1 Prupe.4G052700_v2.0.a1 Prupe.4G052700_v2.0.a1
pyrus_communis	pycom05g28650 pycom10g24160 pycom13g05580 pycom16g05410
rosa_chinensis	RchiOBHm_Chr4g0438501 RchiOBHm_Chr5g0009281
rosa_laevigata	RLG00000006358 RLG00000031644
rosa_multiflora	Rmu_co8445077.1_g000001 Rmu_sc0002327.1_g000018 Rmu_sc0006233.1_g000012
rosa_roxburghii	Rroxscaffold_1G00066810 Rroxscaffold_1G00067510 Rroxscaffold_5G00379510
rosa_rugosa	Rorug04G0310400 Rorug04G0441700 Rorug04G0441700
rosa_samantha	Rh4AG361200 Rh5AG071900 Rh5DG068600
rosa_wichuraiana	Rw0G006600 Rw0G016550 Rw5G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1093
AciI	CCGC	2 cut(s)	108, 990
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	182
AcuI	CTGAAG	4 cut(s)	233, 299, 311, 704
AdeI	CACNNNGTG	1 cut(s)	502
AfiI	CCNNNNNNNGG	2 cut(s)	97, 235
AgsI	TTSAA	6 cut(s)	49, 188, 380, 791, 827, 935
AjnI	CCWGG	1 cut(s)	594
AjuI	GAANNNNNNNTTGG	2 cut(s)	1049, 1081
Alw26I	GTCTC	3 cut(s)	381, 620, 1079
Ama87I	CYCGRG	1 cut(s)	671
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	2 cut(s)	677, 986
ApoI	RAATTY	1 cut(s)	182
AseI	ATTAAT	1 cut(s)	687
Asp700I	GAANNNNTTC	2 cut(s)	120, 717
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	64, 925, 1002
AvaI	CYCGRG	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	809
BbvI	GCAGC	2 cut(s)	689, 998
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	596
BciVI	GTATCC	1 cut(s)	541
BcoDI	GTCTC	3 cut(s)	381, 620, 1079
BfaI	CTAG	1 cut(s)	659
BfuI	GTATCC	1 cut(s)	541
BglII	AGATCT	1 cut(s)	585
BisI	GCNGC	3 cut(s)	678, 987, 990
BlsI	GCNGC	3 cut(s)	679, 988, 991
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	671
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	596
BmsI	GCATC	3 cut(s)	436, 887, 928
BpmI	CTGGAG	2 cut(s)	38, 290
BpuEI	CTTGAG	1 cut(s)	1182
BsaXI	ACNNNNNCTCC	6 cut(s)	42, 72, 210, 240, 1055, 1085
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 235
BseBI	CCWGG	1 cut(s)	596
BseGI	GGATG	2 cut(s)	748, 902
BseLI	CCNNNNNNNGG	2 cut(s)	97, 235
BseMII	CTCAG	1 cut(s)	599
BseRI	GAGGAG	1 cut(s)	862
BseSI	GKGCMC	1 cut(s)	809
BseX3I	CGGCCG	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	689, 998
BseYI	CCCAGC	1 cut(s)	527
BsgI	GTGCAG	1 cut(s)	1141
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	1 cut(s)	168
BsiEI	CGRYCG	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	671
BsiSI	CCGG	1 cut(s)	169
BslI	CCNNNNNNNGG	2 cut(s)	97, 235
BsmAI	GTCTC	3 cut(s)	381, 620, 1079
BsmI	GAATGC	1 cut(s)	1190
BsnI	GGCC	1 cut(s)	168
BsoBI	CYCGRG	1 cut(s)	671
Bsp1286I	GDGCHC	1 cut(s)	809
Bsp143I	GATC	2 cut(s)	62, 585
BspACI	CCGC	2 cut(s)	108, 990
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	600
BspHI	TCATGA	1 cut(s)	967
BspQI	GCTCTTC	1 cut(s)	708
BssMI	GATC	2 cut(s)	62, 585
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	3 cut(s)	553, 1120, 1162
Bst6I	CTCTTC	2 cut(s)	708, 1047
BstC8I	GCNNGC	1 cut(s)	1113
BstDEI	CTNAG	4 cut(s)	321, 608, 1048, 1124
BstF5I	GGATG	2 cut(s)	748, 902
BstKTI	GATC	2 cut(s)	65, 588
BstMAI	GTCTC	3 cut(s)	381, 620, 1079
BstMBI	GATC	2 cut(s)	62, 585
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 286
BstNI	CCWGG	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	594
BstSLI	GKGCMC	1 cut(s)	809
BstV1I	GCAGC	2 cut(s)	689, 998
BstX2I	RGATCY	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	585
BstZI	CGGCCG	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	748, 902
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	1113
CciI	TCATGA	1 cut(s)	967
Cfr13I	GGNCC	1 cut(s)	4
CspCI	CAANNNNNGTGG	2 cut(s)	726, 761
CviAII	CATG	2 cut(s)	968, 1232
DdeI	CTNAG	4 cut(s)	321, 608, 1048, 1124
DpnI	GATC	2 cut(s)	64, 587
DpnII	GATC	2 cut(s)	62, 585
DraIII	CACNNNGTG	1 cut(s)	502
DrdI	GACNNNNNNGTC	1 cut(s)	1093
DseDI	GACNNNNNNGTC	1 cut(s)	1093
EaeI	YGGCCR	1 cut(s)	166
EagI	CGGCCG	1 cut(s)	166
Eam1104I	CTCTTC	2 cut(s)	708, 1047
EarI	CTCTTC	2 cut(s)	708, 1047
EciI	GGCGGA	1 cut(s)	97
EclXI	CGGCCG	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	4
Eco52I	CGGCCG	1 cut(s)	166
Eco57I	CTGAAG	4 cut(s)	233, 299, 311, 704
Eco88I	CYCGRG	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	594
FaeI	CATG	2 cut(s)	971, 1235
FatI	CATG	2 cut(s)	967, 1231
Fnu4HI	GCNGC	3 cut(s)	678, 987, 990
FokI	GGATG	2 cut(s)	755, 909
Fsp4HI	GCNGC	3 cut(s)	678, 987, 990
FspBI	CTAG	1 cut(s)	659
GluI	GCNGC	3 cut(s)	678, 987, 990
GsaI	CCCAGC	1 cut(s)	531
GsuI	CTGGAG	2 cut(s)	38, 290
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	1 cut(s)	169
Hin1II	CATG	2 cut(s)	971, 1235
HpaII	CCGG	1 cut(s)	169
HphI	GGTGA	3 cut(s)	64, 925, 1002
Hpy188III	TCNNGA	4 cut(s)	827, 851, 946, 968
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	4 cut(s)	257, 286, 606, 910
HpyCH4III	ACNGT	3 cut(s)	553, 1120, 1162
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	9 cut(s)	178, 374, 384, 493, 784, 900, 941, 1029, 1158
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 286
HpyF3I	CTNAG	4 cut(s)	321, 608, 1048, 1124
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	2 cut(s)	971, 1235
Kzo9I	GATC	2 cut(s)	62, 585
LguI	GCTCTTC	1 cut(s)	708
LmnI	GCTCC	2 cut(s)	63, 110
Lsp1109I	GCAGC	2 cut(s)	689, 998
LweI	GCATC	3 cut(s)	436, 887, 928
MaeI	CTAG	1 cut(s)	659
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	5 cut(s)	242, 334, 590, 663, 1151
MalI	GATC	2 cut(s)	64, 587
MboI	GATC	2 cut(s)	62, 585
MboII	GAAGA	9 cut(s)	119, 170, 427, 595, 725, 832, 932, 947, 1064
MfeI	CAATTG	1 cut(s)	1106
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	1 cut(s)	809
MluCI	AATT	9 cut(s)	182, 194, 259, 375, 396, 462, 684, 726, 1106
MlyI	GAGTC	4 cut(s)	622, 671, 697, 1064
MmeI	TCCRAC	2 cut(s)	241, 775
MroXI	GAANNNNTTC	2 cut(s)	120, 717
MseI	TTAA	3 cut(s)	533, 687, 815
MspI	CCGG	1 cut(s)	169
MspR9I	CCNGG	1 cut(s)	596
MunI	CAATTG	1 cut(s)	1106
Mva1269I	GAATGC	1 cut(s)	1190
MvaI	CCWGG	1 cut(s)	596
MwoI	GCNNNNNNNGC	2 cut(s)	197, 286
NdeII	GATC	2 cut(s)	62, 585
NlaIII	CATG	2 cut(s)	971, 1235
NmuCI	GTSAC	3 cut(s)	334, 590, 663
PaeR7I	CTCGAG	1 cut(s)	671
PagI	TCATGA	1 cut(s)	967
PciSI	GCTCTTC	1 cut(s)	708
PctI	GAATGC	1 cut(s)	1190
PdmI	GAANNNNTTC	2 cut(s)	120, 717
PfeI	GAWTC	6 cut(s)	301, 350, 443, 823, 847, 1178
PkrI	GCNGC	3 cut(s)	679, 988, 991
PleI	GAGTC	4 cut(s)	622, 670, 697, 1064
PpsI	GAGTC	4 cut(s)	622, 670, 697, 1064
PshBI	ATTAAT	1 cut(s)	687
Psp6I	CCWGG	1 cut(s)	594
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	1 cut(s)	594
PspPI	GGNCC	1 cut(s)	4
PspXI	VCTCGAGB	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	585
SapI	GCTCTTC	1 cut(s)	708
SaqAI	TTAA	3 cut(s)	533, 687, 815
SatI	GCNGC	3 cut(s)	678, 987, 990
Sau3AI	GATC	2 cut(s)	62, 585
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	4 cut(s)	622, 671, 697, 1064
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	1 cut(s)	809
SfaNI	GCATC	3 cut(s)	436, 887, 928
Sfr274I	CTCGAG	1 cut(s)	671
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	671
SmlI	CTYRAG	2 cut(s)	671, 1197
SmoI	CTYRAG	2 cut(s)	671, 1197
Sse9I	AATT	9 cut(s)	182, 194, 259, 375, 396, 462, 684, 726, 1106
SsiI	CCGC	2 cut(s)	108, 990
SspI	AATATT	2 cut(s)	813, 879
SspMI	CTAG	1 cut(s)	659
StyD4I	CCNGG	1 cut(s)	594
TaaI	ACNGT	3 cut(s)	553, 1120, 1162
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	2 cut(s)	446, 672
TasI	AATT	9 cut(s)	182, 194, 259, 375, 396, 462, 684, 726, 1106
TauI	GCSGC	1 cut(s)	992
TfiI	GAWTC	6 cut(s)	301, 350, 443, 823, 847, 1178
Tru1I	TTAA	3 cut(s)	533, 687, 815
Tru9I	TTAA	3 cut(s)	533, 687, 815
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	3 cut(s)	334, 590, 663
TseI	GCWGC	2 cut(s)	677, 986
Tsp45I	GTSAC	3 cut(s)	334, 590, 663
TspDTI	ATGAA	8 cut(s)	113, 171, 225, 293, 380, 860, 984, 1220
TspGWI	ACGGA	1 cut(s)	457
TspRI	CASTG	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	1 cut(s)	687
XapI	RAATTY	1 cut(s)	182
XhoI	CTCGAG	1 cut(s)	671
XmnI	GAANNNNTTC	2 cut(s)	120, 717
XspI	CTAG	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.