Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003212

Physical Location & Seq

Genomic Coordinates Forward (+)

18697235 .. 18700900

Gene Structure 3666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G46110.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGAGTCACGCGTGCTGTTACGCGCCACCGCGAATGTCGTTGGAATTCCGAAATTGAGACGACCAATCGGAGCGATCCACCGTCAATTCAGCACTGCATCGTCTTCCTCGTTCTCGGTTAAACCAATCGGAGGAATCGGAGAGGGAGCGAATCTGATCTCCGGTCGTCAGCTTCGTCCAATTCTTCTTCTCGATTCGTCGGCGATCAACGGAGGAGAGAAAAGAGAAATTCTCAAACCGGTTAAAGCCGCCGCTGCTGAAGGTGGAGATACCGCTGGGGATGCTAAAGTTGGATTCCTCGCCAAGTATCCATGGCTAGTCACTGGATTCTTCTTCTTCATGTGGTACTTCTTGAATGTGATTTTCAACATCCTTAACAAGAAGATCTATAATTACTTCCCTTATCCCTATTTTGTATCGGTGATACACTTGTTCGTGGGAGTTGTTTACTGCTTGATCAGCTGGTCCGTGGGTCTTCCTAAACGTGCCCCGATTGACTCGAACCTCCTCAAGGTATTGATACCAGTCGCAGTCTGTCACGCCTTAGGCCATGTCACTAGCAATGTCTCTTTCGCTGCGGTTGCTGTCTCCTTCACTCACACCATCAAAGCACTTGAGCCATTCTTCAATGCGGCTGCTTCTCAATTCATTATGGGACAATCCATCCCCATAACACTATGGTTGTCTCTAGCTCCTGTTGTTCTTGGTGTTGCAATGGCTTCACTAACTGAGCTATCATTCAACTGGCTCGGTTTCATCAGTGCTATGATATCAAACATTTCTTTCACTTACCGAAGCATCTTCTCCAAGAAAGCCATGACTGATATGGACAGTACAAATGTCTACGCTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAAGTTGGAATGACTAAATTCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAGCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGAAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGGAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTGGAGTTGCAATGTACTCTATCATTAAGGCCAAGATCGAAGAAGAGAAACGGCAAGGAAAGAAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009642 GO:0009643 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042170 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

410

Amino Acids

44.63

Weight (kDa)

9.75

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	107 - 394	7.9e-111	Triose-phosphate Transporter family
EamA	PF00892	250 - 394	1.2e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46110 AT5G46110 AT5G46110 AT5G46110
fragaria_vesca	FvH4_3g08560 FvH4_3g08560 FvH4_4g30170
malus_domestica	MD05G1310100.v1.1 MD10G1289000.v1.1 MD16G1061900.v1.1
prunus_persica	Prupe.1G286000_v2.0.a1 Prupe.4G052700_v2.0.a1 Prupe.4G052700_v2.0.a1 Prupe.4G052700_v2.0.a1
pyrus_communis	pycom05g28650 pycom10g24160 pycom13g05580 pycom16g05410
rosa_chinensis	RchiOBHm_Chr4g0438501 RchiOBHm_Chr5g0009281
rosa_laevigata	RLG00000006358 RLG00000031644
rosa_multiflora	Rmu_co8445077.1_g000001 Rmu_sc0002327.1_g000018 Rmu_sc0006233.1_g000012
rosa_roxburghii	Rroxscaffold_1G00066810 Rroxscaffold_1G00067510 Rroxscaffold_5G00379510
rosa_rugosa	Rorug04G0310400 Rorug04G0441700 Rorug04G0441700
rosa_samantha	Rh4AG361200 Rh5AG071900 Rh5DG068600
rosa_wichuraiana	Rw0G006600 Rw0G016550 Rw5G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	843
AccII	CGCG	5 cut(s)	12, 24, 32, 938, 1058
AciI	CCGC	8 cut(s)	30, 249, 252, 273, 578, 632, 1046, 1058
AclI	AACGTT	1 cut(s)	1068
AclWI	GGATC	1 cut(s)	70
AcsI	RAATTY	3 cut(s)	45, 228, 962
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	3 cut(s)	347, 835, 1178
AfiI	CCNNNNNNNGG	3 cut(s)	131, 511, 1035
AflIII	ACRYGT	2 cut(s)	10, 1078
AgeI	ACCGGT	1 cut(s)	238
AgsI	TTSAA	5 cut(s)	355, 367, 628, 742, 902
AluBI	AGCT	5 cut(s)	172, 462, 692, 733, 1015
AluI	AGCT	5 cut(s)	172, 462, 692, 733, 1015
Alw26I	GTCTC	4 cut(s)	52, 571, 592, 690
AlwI	GGATC	1 cut(s)	70
AoxI	GGCC	2 cut(s)	547, 1191
ApeKI	GCWGC	3 cut(s)	254, 575, 635
ApoI	RAATTY	3 cut(s)	45, 228, 962
AsiGI	ACCGGT	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	465, 905
AsuHPI	GGTGA	1 cut(s)	433
AvaII	GGWCC	2 cut(s)	465, 905
AxyI	CCTNAGG	1 cut(s)	544
BaeGI	GKGCMC	1 cut(s)	490
BaeI	ACNNNNGTAYC	2 cut(s)	416, 449
BbsI	GAAGAC	2 cut(s)	96, 467
BbvI	GCAGC	3 cut(s)	241, 562, 622
BccI	CCATC	6 cut(s)	611, 671, 866, 899, 1008, 1109
BceAI	ACGGC	1 cut(s)	1229
BcgI	CGANNNNNNTGC	2 cut(s)	923, 957
BciVI	GTATCC	1 cut(s)	318
BclI	TGATCA	1 cut(s)	456
BcoDI	GTCTC	4 cut(s)	52, 571, 592, 690
BfaI	CTAG	3 cut(s)	317, 558, 689
BfuI	GTATCC	1 cut(s)	318
BglII	AGATCT	1 cut(s)	384
BisI	GCNGC	6 cut(s)	249, 252, 255, 576, 633, 636
BlsI	GCNGC	6 cut(s)	250, 253, 256, 577, 634, 637
Bme18I	GGWCC	2 cut(s)	465, 905
BmgT120I	GGNCC	2 cut(s)	465, 905
BmsI	GCATC	3 cut(s)	107, 271, 807
BpiI	GAAGAC	2 cut(s)	96, 467
BplI	GAGNNNNNCTC	2 cut(s)	216, 248
BpmI	CTGGAG	1 cut(s)	1185
BpuEI	CTTGAG	2 cut(s)	494, 635
BsaJI	CCNNGG	4 cut(s)	311, 468, 922, 1029
BsaWI	WCCGGW	2 cut(s)	161, 238
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 511, 1035
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	3 cut(s)	328, 524, 749
Bse21I	CCTNAGG	1 cut(s)	544
Bse3DI	GCAATG	4 cut(s)	568, 720, 1158, 1179
BseDI	CCNNGG	4 cut(s)	311, 468, 922, 1029
BseGI	GGATG	3 cut(s)	286, 369, 663
BseLI	CCNNNNNNNGG	3 cut(s)	131, 511, 1035
BseMI	GCAATG	4 cut(s)	568, 720, 1158, 1179
BseMII	CTCAG	1 cut(s)	720
BseNI	ACTGG	3 cut(s)	328, 524, 749
BseRI	GAGGAG	2 cut(s)	228, 497
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	3 cut(s)	241, 562, 622
BseYI	CCCAGC	1 cut(s)	275
Bsh1236I	CGCG	5 cut(s)	12, 24, 32, 938, 1058
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	549, 1193
BshTI	ACCGGT	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	162, 239
BslFI	GGGAC	1 cut(s)	669
BslI	CCNNNNNNNGG	3 cut(s)	131, 511, 1035
BsmAI	GTCTC	4 cut(s)	52, 571, 592, 690
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	669
BsmI	GAATGC	1 cut(s)	879
BsnI	GGCC	2 cut(s)	549, 1193
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp143I	GATC	8 cut(s)	75, 156, 204, 384, 456, 973, 1089, 1197
Bsp19I	CCATGG	2 cut(s)	311, 922
BspACI	CCGC	8 cut(s)	30, 249, 252, 273, 578, 632, 1046, 1058
BspANI	GGCC	2 cut(s)	549, 1193
BspCNI	CTCAG	1 cut(s)	721
BspFNI	CGCG	5 cut(s)	12, 24, 32, 938, 1058
BspPI	GGATC	1 cut(s)	70
BsrDI	GCAATG	4 cut(s)	568, 720, 1158, 1179
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	3 cut(s)	328, 524, 749
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	4 cut(s)	311, 468, 922, 1029
BssMI	GATC	8 cut(s)	75, 156, 204, 384, 456, 973, 1089, 1197
BssT1I	CCWWGG	3 cut(s)	311, 922, 1029
Bst4CI	ACNGT	2 cut(s)	83, 833
Bst6I	CTCTTC	3 cut(s)	875, 983, 1200
BstC8I	GCNNGC	2 cut(s)	14, 1017
BstDEI	CTNAG	2 cut(s)	544, 729
BstDSI	CCRYGG	3 cut(s)	311, 468, 922
BstENI	CCTNNNNNAGG	2 cut(s)	509, 1033
BstF5I	GGATG	3 cut(s)	286, 369, 663
BstFNI	CGCG	5 cut(s)	12, 24, 32, 938, 1058
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	8 cut(s)	78, 159, 207, 387, 459, 976, 1092, 1200
BstMAI	GTCTC	4 cut(s)	52, 571, 592, 690
BstMBI	GATC	8 cut(s)	75, 156, 204, 384, 456, 973, 1089, 1197
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 281, 459, 581, 1169
BstSLI	GKGCMC	1 cut(s)	490
BstUI	CGCG	5 cut(s)	12, 24, 32, 938, 1058
BstV1I	GCAGC	3 cut(s)	241, 562, 622
BstV2I	GAAGAC	2 cut(s)	96, 467
BstX2I	RGATCY	1 cut(s)	384
BstXI	CCANNNNNNTGG	1 cut(s)	1030
BstYI	RGATCY	1 cut(s)	384
Bsu36I	CCTNAGG	1 cut(s)	544
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	549, 1193
BtgI	CCRYGG	3 cut(s)	311, 468, 922
BtgZI	GCGATG	1 cut(s)	847
BtsCI	GGATG	3 cut(s)	286, 369, 663
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	3 cut(s)	93, 321, 766
Cac8I	GCNNGC	2 cut(s)	14, 1017
CfoI	GCGC	1 cut(s)	26
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	465, 905
CseI	GACGC	1 cut(s)	944
Csp6I	GTAC	3 cut(s)	346, 834, 1177
CspAI	ACCGGT	1 cut(s)	238
CviAII	CATG	5 cut(s)	312, 340, 551, 817, 923
CviQI	GTAC	3 cut(s)	346, 834, 1177
DdeI	CTNAG	2 cut(s)	544, 729
DpnI	GATC	8 cut(s)	77, 158, 206, 386, 458, 975, 1091, 1199
DpnII	GATC	8 cut(s)	75, 156, 204, 384, 456, 973, 1089, 1197
Eam1104I	CTCTTC	3 cut(s)	875, 983, 1200
EarI	CTCTTC	3 cut(s)	875, 983, 1200
Eco130I	CCWWGG	3 cut(s)	311, 922, 1029
Eco32I	GATATC	2 cut(s)	771, 1125
Eco47I	GGWCC	2 cut(s)	465, 905
Eco57I	CTGAAG	1 cut(s)	279
Eco81I	CCTNAGG	1 cut(s)	544
EcoNI	CCTNNNNNAGG	2 cut(s)	509, 1033
EcoO109I	RGGNCCY	1 cut(s)	905
EcoRI	GAATTC	1 cut(s)	45
EcoRV	GATATC	2 cut(s)	771, 1125
EcoT14I	CCWWGG	3 cut(s)	311, 922, 1029
ErhI	CCWWGG	3 cut(s)	311, 922, 1029
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	5 cut(s)	315, 343, 554, 820, 926
FaqI	GGGAC	1 cut(s)	669
FatI	CATG	5 cut(s)	311, 339, 550, 816, 922
FbaI	TGATCA	1 cut(s)	456
FblI	GTMKAC	1 cut(s)	843
Fnu4HI	GCNGC	6 cut(s)	249, 252, 255, 576, 633, 636
FokI	GGATG	3 cut(s)	293, 356, 650
Fsp4HI	GCNGC	6 cut(s)	249, 252, 255, 576, 633, 636
FspBI	CTAG	3 cut(s)	317, 558, 689
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	6 cut(s)	249, 252, 255, 576, 633, 636
GsaI	CCCAGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	1185
HaeIII	GGCC	2 cut(s)	549, 1193
HapII	CCGG	2 cut(s)	162, 239
HgaI	GACGC	1 cut(s)	944
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	5 cut(s)	315, 343, 554, 820, 926
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	8 cut(s)	5, 135, 151, 194, 294, 327, 497, 1051
HpaII	CCGG	2 cut(s)	162, 239
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	2 cut(s)	448, 844
Hpy188I	TCNGA	8 cut(s)	51, 71, 131, 140, 156, 973, 1074, 1115
Hpy188III	TCNNGA	3 cut(s)	191, 352, 1087
Hpy8I	GTNNAC	2 cut(s)	448, 844
Hpy99I	CGWCG	2 cut(s)	202, 938
HpyAV	CCTTC	3 cut(s)	254, 601, 896
HpyCH4III	ACNGT	2 cut(s)	83, 833
HpyCH4IV	ACGT	3 cut(s)	484, 1068, 1078
HpyCH4V	TGCA	5 cut(s)	98, 713, 879, 1043, 1172
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 281, 459, 581, 1169
HpyF3I	CTNAG	2 cut(s)	544, 729
HpySE526I	ACGT	3 cut(s)	484, 1068, 1078
Hsp92II	CATG	5 cut(s)	315, 343, 554, 820, 926
HspAI	GCGC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	456
Kzo9I	GATC	8 cut(s)	75, 156, 204, 384, 456, 973, 1089, 1197
LmnI	GCTCC	3 cut(s)	71, 146, 697
Lsp1109I	GCAGC	3 cut(s)	241, 562, 622
LweI	GCATC	3 cut(s)	107, 271, 807
MaeI	CTAG	3 cut(s)	317, 558, 689
MaeII	ACGT	3 cut(s)	484, 1068, 1078
MaeIII	GTNAC	5 cut(s)	6, 18, 319, 536, 553
MalI	GATC	8 cut(s)	77, 158, 206, 386, 458, 975, 1091, 1199
MboI	GATC	8 cut(s)	75, 156, 204, 384, 456, 973, 1089, 1197
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	490
MluCI	AATT	8 cut(s)	45, 53, 86, 180, 228, 391, 644, 962
MluI	ACGCGT	1 cut(s)	10
MlyI	GAGTC	3 cut(s)	14, 491, 1045
MmeI	TCCRAC	5 cut(s)	22, 271, 931, 967, 1042
MnlI	CCTC	9 cut(s)	118, 125, 136, 206, 308, 515, 518, 894, 1029
MseI	TTAA	5 cut(s)	120, 243, 375, 918, 1188
MspA1I	CMGCKG	5 cut(s)	254, 275, 462, 1015, 1048
MspI	CCGG	2 cut(s)	162, 239
Mva1269I	GAATGC	1 cut(s)	879
MvnI	CGCG	5 cut(s)	12, 24, 32, 938, 1058
MwoI	GCNNNNNNNGC	5 cut(s)	254, 281, 459, 581, 1169
NcoI	CCATGG	2 cut(s)	311, 922
NdeII	GATC	8 cut(s)	75, 156, 204, 384, 456, 973, 1089, 1197
NlaIII	CATG	5 cut(s)	315, 343, 554, 820, 926
NmuCI	GTSAC	4 cut(s)	6, 319, 536, 553
PcsI	WCGNNNNNNNCGW	3 cut(s)	107, 172, 870
PctI	GAATGC	1 cut(s)	879
PfeI	GAWTC	5 cut(s)	135, 151, 194, 294, 327
PinAI	ACCGGT	1 cut(s)	238
PkrI	GCNGC	6 cut(s)	250, 253, 256, 577, 634, 637
PleI	GAGTC	3 cut(s)	13, 491, 1045
PpsI	GAGTC	3 cut(s)	13, 491, 1045
PpuMI	RGGWCCY	1 cut(s)	905
Psp1406I	AACGTT	1 cut(s)	1068
Psp5II	RGGWCCY	1 cut(s)	905
PspFI	CCCAGC	1 cut(s)	275
PspPI	GGNCC	2 cut(s)	465, 905
PspPPI	RGGWCCY	1 cut(s)	905
PsuI	RGATCY	1 cut(s)	384
PvuII	CAGCTG	2 cut(s)	462, 1015
RsaI	GTAC	3 cut(s)	347, 835, 1178
RsaNI	GTAC	3 cut(s)	346, 834, 1177
SaqAI	TTAA	5 cut(s)	120, 243, 375, 918, 1188
SatI	GCNGC	6 cut(s)	249, 252, 255, 576, 633, 636
Sau3AI	GATC	8 cut(s)	75, 156, 204, 384, 456, 973, 1089, 1197
Sau96I	GGNCC	2 cut(s)	465, 905
SchI	GAGTC	3 cut(s)	14, 491, 1045
SduI	GDGCHC	1 cut(s)	490
SfaNI	GCATC	3 cut(s)	107, 271, 807
SinI	GGWCC	2 cut(s)	465, 905
SmlI	CTYRAG	2 cut(s)	509, 614
SmoI	CTYRAG	2 cut(s)	509, 614
Sse9I	AATT	8 cut(s)	45, 53, 86, 180, 228, 391, 644, 962
SsiI	CCGC	8 cut(s)	30, 249, 252, 273, 578, 632, 1046, 1058
SspMI	CTAG	3 cut(s)	317, 558, 689
StyI	CCWWGG	3 cut(s)	311, 922, 1029
TaaI	ACNGT	2 cut(s)	83, 833
TaiI	ACGT	3 cut(s)	487, 1071, 1081
TaqI	TCGA	4 cut(s)	192, 500, 1127, 1200
TasI	AATT	8 cut(s)	45, 53, 86, 180, 228, 391, 644, 962
TatI	WGTACW	2 cut(s)	833, 1176
TauI	GCSGC	3 cut(s)	251, 254, 635
TfiI	GAWTC	5 cut(s)	135, 151, 194, 294, 327
Tru1I	TTAA	5 cut(s)	120, 243, 375, 918, 1188
Tru9I	TTAA	5 cut(s)	120, 243, 375, 918, 1188
TscAI	CASTG	3 cut(s)	100, 328, 766
TseFI	GTSAC	4 cut(s)	6, 319, 536, 553
TseI	GCWGC	3 cut(s)	254, 575, 635
Tsp45I	GTSAC	4 cut(s)	6, 319, 536, 553
TspDTI	ATGAA	4 cut(s)	328, 637, 745, 955
TspGWI	ACGGA	2 cut(s)	225, 457
TspRI	CASTG	3 cut(s)	100, 328, 766
VpaK11BI	GGWCC	2 cut(s)	465, 905
XagI	CCTNNNNNAGG	2 cut(s)	509, 1033
XapI	RAATTY	3 cut(s)	45, 228, 962
XcmI	CCANNNNNNNNNTGG	1 cut(s)	823
XmiI	GTMKAC	1 cut(s)	843
XspI	CTAG	3 cut(s)	317, 558, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.