MD16G1061900.v1.1

Triose phosphate phosphate translocator

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
4411068 .. 4414352
3285 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1061900.v1.1.491

Sequence Viewer

Length: 1287 bp
ATGGCTTCATTGATCAACCCAGTTCATTCTCCAATCCGAACTTCTCAGTTTTCTTCGCTGTATTTATCGTCCAATAAGATTTCGCCTTCTTTTGCTCTGCTCAAAGTTCGCTCGCTTTCTTCCAGAGCTTCAAGCTTGGCCTTTTCTCCGTTGCCGGAGGCTGTAAAGCCTTTACCGGCAGTTGGGTTTTCCGGCAAGGGGTTGAAGCTTTCAGGGTGGAGTCAGCAGCTGAGACGGCGGGGCTCTGTTGAGTTGCTGCCGGTTGCTAAGGCTGCAGCTGCCGATGCTGATGGTGCTGAGATTGAAATTGCTGATGGGTATGGGAAGCCTACAAAGAGCTTTTCTGAGAAATTTCCTTTTCTGATCACCGGTTTCTTTTTCTTCATGTGGTACTTGTTAAATGTCATCTTCAACATACTCAACAAGAAGGTCTACAATTATTTCCCATATCCATATTTTGTTTCTGTTATACACCTCCTTGTTGGAGTGGTGTACTGTCTCGTTTCTTGGTCAGTTGGGTTGCCGAAGCGCGCGCCGATTGACAAGGAGCAGTTGGCTCTGCTGACCCCAGTTGCATTCTGTCACGCCCTCGGACATGTCATGTCCAATGTTTCATTTGCAGCTGTGGCTGTTTCTTTCACACACACTATTAAAGCCCTGGAGCCGTTCTTCAATGCATCTGCTTCTCAGTTTGTTTTGGGGCATCACATTCCCTTGTCCCTGTGGCTATCATTGGCCCCTGTCGTGATCGGTGTGTCCATGGCATCATTGACTGAACTTTCTTTCAACTGGCTTGGCTTCGGCAGTGCGATGATTTCAAACATTGCTTTCACCTATAGAAGTATCTATTCAAAAAAAGCAATGACAGGAATGGACAGTACAAATGTGTATGCTTACATTTCAATCATTGCTCTCTTGGTTTGCATCCCACCAGCAATTCTCATTGAAGGGCCCCAACTGATGCAATATGGATTTAAGGATGCTATAGCGAAAGTAGGCCTCTACAAATTTGTCTCTGATTTATTCTGGATCGGAATGTTTTATCATCTGTACAATCAGCTTGCTACTAACACTTTGGAACGGGTTGCACCACTAACGCATGCAGTCGGAAATGTGTTGAAGCGTGTTTTCGTGATCGGGTTCTCCATTGTTGTGTTTGGCAACAAAATCTCTACACAAACTGGGATTGGAACTGCCATCGCAATCGCTGGTGTTGCCATCTACTCCTTAATCAAAGCAAACTTGGAAGAGCAAAAACGGAAGGCTGCTGCAGTTTCCGCATCATAG

Protein Analysis

429

Amino Acids

46.6

Weight (kDa)

9.64

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 123 - 409 1.3e-107 Triose-phosphate Transporter family
EamA PF00892 266 - 409 3.6e-06 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 432
AccII CGCG 2 cut(s) 531, 533
AciI CCGC 2 cut(s) 238, 1278
AclWI GGATC 1 cut(s) 1037
AcsI RAATTY 2 cut(s) 350, 1007
AfaI GTAC 4 cut(s) 392, 494, 880, 1052
AfiI CCNNNNNNNGG 2 cut(s) 182, 198
AflIII ACRYGT 1 cut(s) 595
AgeI ACCGGT 1 cut(s) 368
AjnI CCWGG 1 cut(s) 657
AjuI GAANNNNNNNTTGG 2 cut(s) 25, 57
AluBI AGCT 8 cut(s) 128, 135, 208, 229, 278, 339, 623, 1060
AluI AGCT 8 cut(s) 128, 135, 208, 229, 278, 339, 623, 1060
Alw26I GTCTC 3 cut(s) 226, 503, 1018
AlwI GGATC 1 cut(s) 1037
AlwNI CAGNNNCTG 1 cut(s) 229
AoxI GGCC 4 cut(s) 138, 735, 950, 997
ApaI GGGCCC 1 cut(s) 954
ApeKI GCWGC 8 cut(s) 226, 256, 272, 275, 278, 620, 1265, 1268
ApoI RAATTY 2 cut(s) 350, 1007
AsiGI ACCGGT 1 cut(s) 368
AspLEI GCGC 3 cut(s) 531, 533, 535
AspS9I GGNCC 3 cut(s) 736, 950, 951
AsuHPI GGTGA 2 cut(s) 358, 823
BaeGI GKGCMC 1 cut(s) 954
BanII GRGCYC 2 cut(s) 245, 954
BbvI GCAGC 8 cut(s) 238, 243, 259, 265, 287, 632, 1252, 1255
BccI CCATC 4 cut(s) 284, 308, 1205, 1226
BceAI ACGGC 2 cut(s) 251, 649
BciT130I CCWGG 1 cut(s) 659
BclI TGATCA 2 cut(s) 12, 363
BcoDI GTCTC 3 cut(s) 226, 503, 1018
BfmI CTRYAG 4 cut(s) 273, 835, 984, 1269
BisI GCNGC 8 cut(s) 227, 257, 273, 276, 279, 621, 1266, 1269
BlsI GCNGC 8 cut(s) 228, 258, 274, 277, 280, 622, 1267, 1270
Bme1390I CCNGG 1 cut(s) 659
BmgT120I GGNCC 3 cut(s) 736, 950, 951
BmiI GGNNCC 4 cut(s) 663, 738, 952, 953
BmrFI CCNGG 1 cut(s) 659
BmrI ACTGGG 3 cut(s) 14, 563, 1191
BmsI GCATC 7 cut(s) 274, 686, 712, 773, 933, 951, 970
BmuI ACTGGG 3 cut(s) 14, 563, 1191
BpmI CTGGAG 1 cut(s) 680
Bpu10I CCTNAGC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 589, 657, 759
BsaWI WCCGGW 1 cut(s) 368
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 198
Bse118I RCCGGY 3 cut(s) 175, 259, 368
Bse1I ACTGG 4 cut(s) 20, 569, 794, 1186
Bse3DI GCAATG 3 cut(s) 822, 867, 906
BseBI CCWGG 1 cut(s) 659
BseDI CCNNGG 3 cut(s) 589, 657, 759
BseGI GGATG 2 cut(s) 924, 985
BseLI CCNNNNNNNGG 2 cut(s) 182, 198
BseMI GCAATG 3 cut(s) 822, 867, 906
BseMII CTCAG 5 cut(s) 59, 221, 288, 336, 701
BseNI ACTGG 4 cut(s) 20, 569, 794, 1186
BsePI GCGCGC 2 cut(s) 529, 531
BseSI GKGCMC 1 cut(s) 954
BseXI GCAGC 8 cut(s) 238, 243, 259, 265, 287, 632, 1252, 1255
Bsh1236I CGCG 2 cut(s) 531, 533
BshFI GGCC 4 cut(s) 140, 737, 952, 999
BshTI ACCGGT 1 cut(s) 368
BsiSI CCGG 5 cut(s) 155, 176, 192, 260, 369
BslFI GGGAC 1 cut(s) 703
BslI CCNNNNNNNGG 2 cut(s) 182, 198
BsmAI GTCTC 3 cut(s) 226, 503, 1018
BsmBI CGTCTC 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 703
BsmI GAATGC 1 cut(s) 575
BsnI GGCC 4 cut(s) 140, 737, 952, 999
Bsp120I GGGCCC 1 cut(s) 950
Bsp1286I GDGCHC 2 cut(s) 245, 954
Bsp1407I TGTACA 1 cut(s) 1050
Bsp143I GATC 5 cut(s) 12, 363, 747, 1029, 1134
Bsp19I CCATGG 1 cut(s) 759
BspACI CCGC 2 cut(s) 238, 1278
BspANI GGCC 4 cut(s) 140, 737, 952, 999
BspCNI CTCAG 5 cut(s) 58, 222, 289, 337, 700
BspFNI CGCG 2 cut(s) 531, 533
BspLI GGNNCC 4 cut(s) 663, 738, 952, 953
BspMAI CTGCAG 2 cut(s) 277, 1273
BspPI GGATC 1 cut(s) 1037
BspQI GCTCTTC 1 cut(s) 1242
BsrDI GCAATG 3 cut(s) 822, 867, 906
BsrFI RCCGGY 3 cut(s) 175, 259, 368
BsrGI TGTACA 1 cut(s) 1050
BsrI ACTGG 4 cut(s) 20, 569, 794, 1186
BssAI RCCGGY 3 cut(s) 175, 259, 368
BssECI CCNNGG 3 cut(s) 589, 657, 759
BssHII GCGCGC 2 cut(s) 529, 531
BssMI GATC 5 cut(s) 12, 363, 747, 1029, 1134
BssT1I CCWWGG 1 cut(s) 759
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 2 cut(s) 497, 878
Bst6I CTCTTC 1 cut(s) 1242
BstAUI TGTACA 1 cut(s) 1050
BstC8I GCNNGC 5 cut(s) 113, 531, 533, 1062, 1101
BstDEI CTNAG 6 cut(s) 45, 230, 267, 297, 345, 687
BstDSI CCRYGG 1 cut(s) 759
BstF5I GGATG 2 cut(s) 924, 985
BstFNI CGCG 2 cut(s) 531, 533
BstHHI GCGC 3 cut(s) 531, 533, 535
BstKTI GATC 5 cut(s) 15, 366, 750, 1032, 1137
BstMAI GTCTC 3 cut(s) 226, 503, 1018
BstMBI GATC 5 cut(s) 12, 363, 747, 1029, 1134
BstMWI GCNNNNNNNGC 8 cut(s) 235, 272, 278, 284, 293, 626, 1214, 1277
BstNI CCWGG 1 cut(s) 659
BstNSI RCATGY 2 cut(s) 599, 1103
BstSCI CCNGG 1 cut(s) 657
BstSFI CTRYAG 4 cut(s) 273, 835, 984, 1269
BstSLI GKGCMC 1 cut(s) 954
BstUI CGCG 2 cut(s) 531, 533
BstV1I GCAGC 8 cut(s) 238, 243, 259, 265, 287, 632, 1252, 1255
BsuRI GGCC 4 cut(s) 140, 737, 952, 999
BtgI CCRYGG 1 cut(s) 759
BtgZI GCGATG 2 cut(s) 824, 1183
BtsCI GGATG 2 cut(s) 924, 985
BtsI GCAGTG 1 cut(s) 811
BtsIMutI CAGTG 1 cut(s) 811
Cac8I GCNNGC 5 cut(s) 113, 531, 533, 1062, 1101
CaiI CAGNNNCTG 1 cut(s) 229
CfoI GCGC 3 cut(s) 531, 533, 535
Cfr10I RCCGGY 3 cut(s) 175, 259, 368
Cfr13I GGNCC 3 cut(s) 736, 950, 951
Csp6I GTAC 4 cut(s) 391, 493, 879, 1051
CspAI ACCGGT 1 cut(s) 368
CviAII CATG 5 cut(s) 385, 596, 601, 760, 1100
CviQI GTAC 4 cut(s) 391, 493, 879, 1051
DdeI CTNAG 6 cut(s) 45, 230, 267, 297, 345, 687
DpnI GATC 5 cut(s) 14, 365, 749, 1031, 1136
DpnII GATC 5 cut(s) 12, 363, 747, 1029, 1134
Eam1104I CTCTTC 1 cut(s) 1242
EarI CTCTTC 1 cut(s) 1242
Eco130I CCWWGG 1 cut(s) 759
Eco147I AGGCCT 1 cut(s) 999
Eco24I GRGCYC 2 cut(s) 245, 954
EcoO109I RGGNCCY 2 cut(s) 950, 951
EcoRII CCWGG 1 cut(s) 657
EcoT14I CCWWGG 1 cut(s) 759
EcoT22I ATGCAT 1 cut(s) 679
EcoT38I GRGCYC 2 cut(s) 245, 954
ErhI CCWWGG 1 cut(s) 759
Esp3I CGTCTC 1 cut(s) 226
FaeI CATG 5 cut(s) 388, 599, 604, 763, 1103
FaqI GGGAC 1 cut(s) 703
FatI CATG 5 cut(s) 384, 595, 600, 759, 1099
FauI CCCGC 1 cut(s) 231
FbaI TGATCA 2 cut(s) 12, 363
FblI GTMKAC 1 cut(s) 432
Fnu4HI GCNGC 8 cut(s) 227, 257, 273, 276, 279, 621, 1266, 1269
FokI GGATG 2 cut(s) 911, 992
FriOI GRGCYC 2 cut(s) 245, 954
Fsp4HI GCNGC 8 cut(s) 227, 257, 273, 276, 279, 621, 1266, 1269
GlaI GCGC 3 cut(s) 530, 532, 534
GluI GCNGC 8 cut(s) 227, 257, 273, 276, 279, 621, 1266, 1269
GsuI CTGGAG 1 cut(s) 680
HaeIII GGCC 4 cut(s) 140, 737, 952, 999
HapII CCGG 5 cut(s) 155, 176, 192, 260, 369
HhaI GCGC 3 cut(s) 531, 533, 535
Hin1II CATG 5 cut(s) 388, 599, 604, 763, 1103
Hin6I GCGC 3 cut(s) 529, 531, 533
HinP1I GCGC 3 cut(s) 529, 531, 533
HindIII AAGCTT 2 cut(s) 133, 206
HinfI GANTC 1 cut(s) 220
HpaII CCGG 5 cut(s) 155, 176, 192, 260, 369
HphI GGTGA 2 cut(s) 358, 823
Hpy166II GTNNAC 2 cut(s) 433, 493
Hpy188I TCNGA 7 cut(s) 38, 346, 363, 593, 1018, 1034, 1109
Hpy188III TCNNGA 4 cut(s) 123, 745, 1027, 1132
Hpy8I GTNNAC 2 cut(s) 433, 493
HpyAV CCTTC 4 cut(s) 96, 421, 941, 1255
HpyCH4III ACNGT 2 cut(s) 497, 878
HpyCH4V TGCA 9 cut(s) 275, 575, 620, 677, 924, 964, 1088, 1103, 1271
HpyF10VI GCNNNNNNNGC 8 cut(s) 235, 272, 278, 284, 293, 626, 1214, 1277
HpyF3I CTNAG 6 cut(s) 45, 230, 267, 297, 345, 687
Hsp92II CATG 5 cut(s) 388, 599, 604, 763, 1103
HspAI GCGC 3 cut(s) 529, 531, 533
Ksp22I TGATCA 2 cut(s) 12, 363
Kzo9I GATC 5 cut(s) 12, 363, 747, 1029, 1134
LguI GCTCTTC 1 cut(s) 1242
LmnI GCTCC 2 cut(s) 547, 661
Lsp1109I GCAGC 8 cut(s) 238, 243, 259, 265, 287, 632, 1252, 1255
LweI GCATC 7 cut(s) 274, 686, 712, 773, 933, 951, 970
MaeIII GTNAC 1 cut(s) 581
MalI GATC 5 cut(s) 14, 365, 749, 1031, 1136
MboI GATC 5 cut(s) 12, 363, 747, 1029, 1134
MboII GAAGA 6 cut(s) 45, 111, 373, 400, 661, 1259
MhlI GDGCHC 2 cut(s) 245, 954
MluCI AATT 5 cut(s) 306, 350, 436, 936, 1007
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 2 cut(s) 463, 1087
MnlI CCTC 4 cut(s) 151, 485, 599, 1010
Mph1103I ATGCAT 1 cut(s) 679
MseI TTAA 4 cut(s) 398, 651, 975, 1229
MslI CAYNNNNRTG 1 cut(s) 1151
MspA1I CMGCKG 3 cut(s) 229, 278, 623
MspI CCGG 5 cut(s) 155, 176, 192, 260, 369
MspR9I CCNGG 1 cut(s) 659
Mva1269I GAATGC 1 cut(s) 575
MvaI CCWGG 1 cut(s) 659
MvnI CGCG 2 cut(s) 531, 533
MwoI GCNNNNNNNGC 8 cut(s) 235, 272, 278, 284, 293, 626, 1214, 1277
NcoI CCATGG 1 cut(s) 759
NdeII GATC 5 cut(s) 12, 363, 747, 1029, 1134
NlaIII CATG 5 cut(s) 388, 599, 604, 763, 1103
NlaIV GGNNCC 4 cut(s) 663, 738, 952, 953
NmuCI GTSAC 1 cut(s) 581
NsiI ATGCAT 1 cut(s) 679
NspI RCATGY 2 cut(s) 599, 1103
PaeI GCATGC 1 cut(s) 1103
PauI GCGCGC 2 cut(s) 529, 531
PceI AGGCCT 1 cut(s) 999
PciI ACATGT 1 cut(s) 595
PciSI GCTCTTC 1 cut(s) 1242
PctI GAATGC 1 cut(s) 575
PinAI ACCGGT 1 cut(s) 368
PkrI GCNGC 8 cut(s) 228, 258, 274, 277, 280, 622, 1267, 1270
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PscI ACATGT 1 cut(s) 595
Psp6I CCWGG 1 cut(s) 657
PspGI CCWGG 1 cut(s) 657
PspN4I GGNNCC 4 cut(s) 663, 738, 952, 953
PspOMI GGGCCC 1 cut(s) 950
PspPI GGNCC 3 cut(s) 736, 950, 951
PstI CTGCAG 2 cut(s) 277, 1273
PstNI CAGNNNCTG 1 cut(s) 229
PteI GCGCGC 2 cut(s) 529, 531
PvuII CAGCTG 3 cut(s) 229, 278, 623
RsaI GTAC 4 cut(s) 392, 494, 880, 1052
RsaNI GTAC 4 cut(s) 391, 493, 879, 1051
RseI CAYNNNNRTG 1 cut(s) 1151
SapI GCTCTTC 1 cut(s) 1242
SaqAI TTAA 4 cut(s) 398, 651, 975, 1229
SatI GCNGC 8 cut(s) 227, 257, 273, 276, 279, 621, 1266, 1269
Sau3AI GATC 5 cut(s) 12, 363, 747, 1029, 1134
Sau96I GGNCC 3 cut(s) 736, 950, 951
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 659
SduI GDGCHC 2 cut(s) 245, 954
SfaNI GCATC 7 cut(s) 274, 686, 712, 773, 933, 951, 970
SfcI CTRYAG 4 cut(s) 273, 835, 984, 1269
SmiMI CAYNNNNRTG 1 cut(s) 1151
SphI GCATGC 1 cut(s) 1103
Sse9I AATT 5 cut(s) 306, 350, 436, 936, 1007
SseBI AGGCCT 1 cut(s) 999
SsiI CCGC 2 cut(s) 238, 1278
StuI AGGCCT 1 cut(s) 999
StyD4I CCNGG 1 cut(s) 657
StyI CCWWGG 1 cut(s) 759
TaaI ACNGT 2 cut(s) 497, 878
TasI AATT 5 cut(s) 306, 350, 436, 936, 1007
TatI WGTACW 3 cut(s) 492, 878, 1050
Tru1I TTAA 4 cut(s) 398, 651, 975, 1229
Tru9I TTAA 4 cut(s) 398, 651, 975, 1229
TscAI CASTG 1 cut(s) 811
TseFI GTSAC 1 cut(s) 581
TseI GCWGC 8 cut(s) 226, 256, 272, 275, 278, 620, 1265, 1268
Tsp45I GTSAC 1 cut(s) 581
TspDTI ATGAA 3 cut(s) 14, 373, 603
TspGWI ACGGA 2 cut(s) 138, 1273
TspRI CASTG 1 cut(s) 811
XapI RAATTY 2 cut(s) 350, 1007
XceI RCATGY 2 cut(s) 599, 1103
XmiI GTMKAC 1 cut(s) 432
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.