Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8445077.1

Orthogroup ID

OG0003212

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1633

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8445077.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 721 bp

ttgcattttgtcacgctctcggacatgtcatgtccaatgtctcttttgcagctgttgccgtgtcttttacacacaccattaaagccctggagccattcttcaatgcttctgcttctcagtttgttttggggcatcacattcccttgtccttgtggctctcattagcccctgttgttattggtgtgtcaatggcatcactgactgaactctctttcaactggcttggctttggtagtgcaatgatttcaaacattgcattcacctacagaagtatctattccaaaaaagccatgacaggaatggacagtacaaatgtatacgcctacatttcaataattgctctcttggtttgcattccaccagcactaattattgaaggacccaaactgatgcaatatggttttagggatgcaattgccaaagtaggcatttacaaatttgtgtctgatttattctggattggaatgttttatcatctgtacaatcagcttgctaccaacactttggaacgagttgcaccactaacgcatgcagttggaaatgtgttgaaacgtgtctttgtgatcgggttctccattgttgtgtttggcaacaggatctctacacaaactggcattggtactgcaatagcaattgctggtgttgccatttactccctgataaaagcaaacttggaagagcaaaagaaggtaaggattttacagtccttaactcttccttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009642 GO:0009643 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042170 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

239

Amino Acids

26.04

Weight (kDa)

9.49

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46110 AT5G46110 AT5G46110 AT5G46110
fragaria_vesca	FvH4_3g08560 FvH4_3g08560 FvH4_4g30170
malus_domestica	MD05G1310100.v1.1 MD10G1289000.v1.1 MD16G1061900.v1.1
prunus_persica	Prupe.1G286000_v2.0.a1 Prupe.4G052700_v2.0.a1 Prupe.4G052700_v2.0.a1 Prupe.4G052700_v2.0.a1
pyrus_communis	pycom05g28650 pycom10g24160 pycom13g05580 pycom16g05410
rosa_chinensis	RchiOBHm_Chr4g0438501 RchiOBHm_Chr5g0009281
rosa_laevigata	RLG00000006358 RLG00000031644
rosa_multiflora	Rmu_co8445077.1_g000001 Rmu_sc0002327.1_g000018 Rmu_sc0006233.1_g000012
rosa_roxburghii	Rroxscaffold_1G00066810 Rroxscaffold_1G00067510 Rroxscaffold_5G00379510
rosa_rugosa	Rorug04G0310400 Rorug04G0441700 Rorug04G0441700
rosa_samantha	Rh4AG361200 Rh5AG071900 Rh5DG068600
rosa_wichuraiana	Rw0G006600 Rw0G016550 Rw5G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	317
AclWI	GGATC	1 cut(s)	604
AcsI	RAATTY	1 cut(s)	436
AfaI	GTAC	3 cut(s)	309, 481, 621
AflIII	ACRYGT	2 cut(s)	24, 552
AgsI	TTSAA	6 cut(s)	102, 216, 248, 332, 376, 549
AjnI	CCWGG	1 cut(s)	86
AluBI	AGCT	2 cut(s)	52, 489
AluI	AGCT	2 cut(s)	52, 489
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	604
ApeKI	GCWGC	1 cut(s)	49
ApoI	RAATTY	1 cut(s)	436
AspS9I	GGNCC	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	379
BaeI	ACNNNNGTAYC	2 cut(s)	255, 288
BbvI	GCAGC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	264
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	88
Bme18I	GGWCC	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	2 cut(s)	92, 381
BmrFI	CCNGG	1 cut(s)	88
BmsI	GCATC	4 cut(s)	141, 202, 380, 399
BpmI	CTGGAG	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	86
Bse1I	ACTGG	2 cut(s)	223, 615
Bse3DI	GCAATG	2 cut(s)	245, 251
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	1 cut(s)	414
BseMI	GCAATG	2 cut(s)	245, 251
BseMII	CTCAG	1 cut(s)	130
BseNI	ACTGG	2 cut(s)	223, 615
BseXI	GCAGC	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	45
BsmI	GAATGC	2 cut(s)	256, 353
Bsp1407I	TGTACA	1 cut(s)	479
Bsp143I	GATC	2 cut(s)	563, 596
BspCNI	CTCAG	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	92, 381
BspPI	GGATC	1 cut(s)	604
BspQI	GCTCTTC	1 cut(s)	671
BsrDI	GCAATG	2 cut(s)	245, 251
BsrGI	TGTACA	1 cut(s)	479
BsrI	ACTGG	2 cut(s)	223, 615
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	2 cut(s)	563, 596
BssNAI	GTATAC	1 cut(s)	318
Bst1107I	GTATAC	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	2 cut(s)	307, 704
Bst6I	CTCTTC	1 cut(s)	671
BstAPI	GCANNNNNTGC	1 cut(s)	55
BstAUI	TGTACA	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	491, 530
BstDEI	CTNAG	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	414
BstKTI	GATC	2 cut(s)	566, 599
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	2 cut(s)	563, 596
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 643
BstNI	CCWGG	1 cut(s)	88
BstNSI	RCATGY	2 cut(s)	28, 532
BstSCI	CCNGG	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	596
BstXI	CCANNNNNNTGG	1 cut(s)	504
BstYI	RGATCY	1 cut(s)	596
BstZ17I	GTATAC	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	491, 530
Cfr13I	GGNCC	1 cut(s)	379
Csp6I	GTAC	3 cut(s)	308, 480, 620
CviAII	CATG	4 cut(s)	25, 30, 291, 529
CviJI	RGCY	9 cut(s)	52, 85, 93, 156, 166, 222, 227, 289, 489
CviKI_1	RGCY	9 cut(s)	52, 85, 93, 156, 166, 222, 227, 289, 489
CviQI	GTAC	3 cut(s)	308, 480, 620
DdeI	CTNAG	1 cut(s)	116
DpnI	GATC	2 cut(s)	565, 598
DpnII	GATC	2 cut(s)	563, 596
Eam1104I	CTCTTC	1 cut(s)	671
EarI	CTCTTC	1 cut(s)	671
Eco47I	GGWCC	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	86
FaeI	CATG	4 cut(s)	28, 33, 294, 532
FaiI	YATR	6 cut(s)	26, 31, 292, 318, 398, 530
FatI	CATG	4 cut(s)	24, 29, 290, 528
FblI	GTMKAC	1 cut(s)	317
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	1 cut(s)	421
Fsp4HI	GCNGC	1 cut(s)	50
GluI	GCNGC	1 cut(s)	50
GsuI	CTGGAG	1 cut(s)	109
Hin1II	CATG	4 cut(s)	28, 33, 294, 532
HphI	GGTGA	1 cut(s)	252
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	2 cut(s)	22, 447
Hpy188III	TCNNGA	1 cut(s)	456
Hpy8I	GTNNAC	1 cut(s)	318
HpyAV	CCTTC	2 cut(s)	370, 681
HpyCH4III	ACNGT	2 cut(s)	307, 704
HpyCH4IV	ACGT	1 cut(s)	552
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 643
HpyF3I	CTNAG	1 cut(s)	116
HpySE526I	ACGT	1 cut(s)	552
Hsp92II	CATG	4 cut(s)	28, 33, 294, 532
Kzo9I	GATC	2 cut(s)	563, 596
LguI	GCTCTTC	1 cut(s)	671
LmnI	GCTCC	1 cut(s)	90
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	4 cut(s)	141, 202, 380, 399
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	2 cut(s)	565, 598
MboI	GATC	2 cut(s)	563, 596
MboII	GAAGA	3 cut(s)	90, 688, 706
MfeI	CAATTG	2 cut(s)	413, 632
MflI	RGATCY	1 cut(s)	596
MluCI	AATT	5 cut(s)	335, 368, 413, 436, 632
MmeI	TCCRAC	1 cut(s)	516
MseI	TTAA	2 cut(s)	80, 709
MslI	CAYNNNNRTG	1 cut(s)	580
MspA1I	CMGCKG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	88
MunI	CAATTG	2 cut(s)	413, 632
Mva1269I	GAATGC	2 cut(s)	256, 353
MvaI	CCWGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	55, 643
NdeII	GATC	2 cut(s)	563, 596
NlaIII	CATG	4 cut(s)	28, 33, 294, 532
NlaIV	GGNNCC	2 cut(s)	92, 381
NmuCI	GTSAC	1 cut(s)	10
NspI	RCATGY	2 cut(s)	28, 532
PaeI	GCATGC	1 cut(s)	532
PciI	ACATGT	1 cut(s)	24
PciSI	GCTCTTC	1 cut(s)	671
PctI	GAATGC	2 cut(s)	256, 353
PkrI	GCNGC	1 cut(s)	51
PpuMI	RGGWCCY	1 cut(s)	379
PscI	ACATGT	1 cut(s)	24
Psp5II	RGGWCCY	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	92, 381
PspPI	GGNCC	1 cut(s)	379
PspPPI	RGGWCCY	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	596
PvuII	CAGCTG	1 cut(s)	52
RsaI	GTAC	3 cut(s)	309, 481, 621
RsaNI	GTAC	3 cut(s)	308, 480, 620
RseI	CAYNNNNRTG	1 cut(s)	580
SapI	GCTCTTC	1 cut(s)	671
SaqAI	TTAA	2 cut(s)	80, 709
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	2 cut(s)	563, 596
Sau96I	GGNCC	1 cut(s)	379
ScrFI	CCNGG	1 cut(s)	88
SetI	ASST	5 cut(s)	54, 265, 491, 555, 692
SfaNI	GCATC	4 cut(s)	141, 202, 380, 399
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	580
SphI	GCATGC	1 cut(s)	532
Sse9I	AATT	5 cut(s)	335, 368, 413, 436, 632
StyD4I	CCNGG	1 cut(s)	86
TaaI	ACNGT	2 cut(s)	307, 704
TaiI	ACGT	1 cut(s)	555
TasI	AATT	5 cut(s)	335, 368, 413, 436, 632
TatI	WGTACW	2 cut(s)	307, 479
Tru1I	TTAA	2 cut(s)	80, 709
Tru9I	TTAA	2 cut(s)	80, 709
TscAI	CASTG	1 cut(s)	203
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	10
TspRI	CASTG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	379
XapI	RAATTY	1 cut(s)	436
XceI	RCATGY	2 cut(s)	28, 532
XcmI	CCANNNNNNNNNTGG	2 cut(s)	84, 297
XmiI	GTMKAC	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.