Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00245

Orthogroup ID

OG0003212

Physical Location & Seq

Genomic Coordinates Reverse (-)

237480 .. 240544

Gene Structure 3065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G006600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGCTTCAATGATCACCCCAGTTCGCTCCCCAATCCGAACTAATCAAATTTCCTCGCTTTACTTATCACCCAATAGGATTTCACCTTCCAATGTTGCCCTCAAGTCTCGGTCTCTGTCTTCCTCAAGCTTGGCCTTTTCACCGTTGCCGGAGAAACTAAGAGTTCCGGCTTTGTCGACGGGATTTTCCGGCTGGAGTCAACACCTGAGAAGGCGAGGGACTGTTGAATTGCCGGTAGTGAAGGCTGCTTCAGATGGTGCTGAGATTGAGATTACTGAGGGGTCAAAGAGCTTTCTTGAGAAATTTCCTTTCTTGATCACTGGCTTTTTTTTCTTCATGTGGTATTTCTTGAATGTCATCTTCAATATACTGAACAAGAAGGTCTACAATTATTTCCCATATCCATATTTTGTTTCTGTTATACATCTCCTTGTTGGAGTGGTGTACTGTCTTGTTTCTTGGTCTGTTGGATTGCCGAAGCGTGCACCGATTGACAGGGAGCAATTGGCACTGCTGACCCCAGTTGCATTTTGTCACGCTCTCGGACATGTCATGTCCAATGTCTCTTTTGCAGCTGTTGCCGTGTCTTTTACACACACCATTAAAGCCCTGGAGCCATTCTTCAATGCTTCTGCTTCTCAGTTTGTTTTGGGGCATCACATTCCCTTGTCCTTGTGGCTCTCATTAGCCCCTGTTGTTATTGGTGTGTCAATGGCATCACTGACTGAACTCTCTTTCAACTGGCTTGGCTTTGGTAGTGCAATGATTTCAAACATTGCATTCACCTACAGAAGTATCTATTCCAAAAAAGCCATGACAGGAATGGACAGTACAAATGTATACGCCTACATTTCAATAATTGCTCTCTTGGTTTGCATCCCACCAGCACTAATTATTGAAGGACCCAAACTGATGCAATATGGTTTTAGGGATGCAATTGCCAAAGTAGGCATTTACAAATTTGTGTCTGATTTATTCTGGATTGGAATGTTTTATCATCTGTACAATCAGCTTGCTACCAACACTTTGGAACGAGTTGCACCACTAACGCATGCAGTTGGAAATGTGTTGAAACGTGTCTTTGTGATCGGGTTCTCCATTGTTGTGTTTGGCAACAGGATCTCTACACAAACTGGCATTGGTACTGCAATAGCAATTGCTGGTGTTGCCATTTACTCCCTGATAAAAGCAAACTTGGAAGAGCAAAAGAAGAAGGCTGCTGCAATTTCAACATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009642 GO:0009643 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042170 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

412

Amino Acids

45.31

Weight (kDa)

9.74

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	107 - 393	1.7e-107	Triose-phosphate Transporter family
EamA	PF00892	250 - 393	1.9e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46110 AT5G46110 AT5G46110 AT5G46110
fragaria_vesca	FvH4_3g08560 FvH4_3g08560 FvH4_4g30170
malus_domestica	MD05G1310100.v1.1 MD10G1289000.v1.1 MD16G1061900.v1.1
prunus_persica	Prupe.1G286000_v2.0.a1 Prupe.4G052700_v2.0.a1 Prupe.4G052700_v2.0.a1 Prupe.4G052700_v2.0.a1
pyrus_communis	pycom05g28650 pycom10g24160 pycom13g05580 pycom16g05410
rosa_chinensis	RchiOBHm_Chr4g0438501 RchiOBHm_Chr5g0009281
rosa_laevigata	RLG00000006358 RLG00000031644
rosa_multiflora	Rmu_co8445077.1_g000001 Rmu_sc0002327.1_g000018 Rmu_sc0006233.1_g000012
rosa_roxburghii	Rroxscaffold_1G00066810 Rroxscaffold_1G00067510 Rroxscaffold_5G00379510
rosa_rugosa	Rorug04G0310400 Rorug04G0441700 Rorug04G0441700
rosa_samantha	Rh4AG361200 Rh5AG071900 Rh5DG068600
rosa_wichuraiana	Rw0G006600 Rw0G016550 Rw5G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	176, 384, 840
AclWI	GGATC	1 cut(s)	1127
AcsI	RAATTY	3 cut(s)	48, 302, 959
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	4 cut(s)	446, 832, 1004, 1144
AflIII	ACRYGT	2 cut(s)	547, 1075
AjnI	CCWGG	1 cut(s)	609
AluBI	AGCT	4 cut(s)	129, 291, 575, 1012
AluI	AGCT	4 cut(s)	129, 291, 575, 1012
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	3 cut(s)	111, 117, 568
Alw44I	GTGCAC	1 cut(s)	483
AlwI	GGATC	1 cut(s)	1127
AoxI	GGCC	1 cut(s)	132
ApaLI	GTGCAC	1 cut(s)	483
ApeKI	GCWGC	4 cut(s)	245, 572, 1217, 1220
ApoI	RAATTY	3 cut(s)	48, 302, 959
AspS9I	GGNCC	1 cut(s)	902
AsuHPI	GGTGA	5 cut(s)	7, 60, 75, 132, 775
AvaII	GGWCC	1 cut(s)	902
BaeGI	GKGCMC	1 cut(s)	487
BaeI	ACNNNNGTAYC	2 cut(s)	778, 811
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	4 cut(s)	232, 584, 1204, 1207
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	566
BciT130I	CCWGG	1 cut(s)	611
BclI	TGATCA	2 cut(s)	12, 315
BcoDI	GTCTC	3 cut(s)	111, 117, 568
BfmI	CTRYAG	1 cut(s)	787
BisI	GCNGC	4 cut(s)	246, 573, 1218, 1221
BlsI	GCNGC	4 cut(s)	247, 574, 1219, 1222
Bme1390I	CCNGG	1 cut(s)	611
Bme18I	GGWCC	1 cut(s)	902
BmgT120I	GGNCC	1 cut(s)	902
BmiI	GGNNCC	2 cut(s)	615, 904
BmrFI	CCNGG	1 cut(s)	611
BmrI	ACTGGG	2 cut(s)	14, 515
BmsI	GCATC	5 cut(s)	664, 725, 885, 903, 922
BmuI	ACTGGG	2 cut(s)	14, 515
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	2 cut(s)	214, 632
BpuEI	CTTGAG	3 cut(s)	86, 109, 317
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	609
Bse118I	RCCGGY	1 cut(s)	232
Bse1I	ACTGG	5 cut(s)	20, 325, 521, 746, 1138
Bse3DI	GCAATG	2 cut(s)	768, 774
BseBI	CCWGG	1 cut(s)	611
BseDI	CCNNGG	1 cut(s)	609
BseGI	GGATG	2 cut(s)	876, 937
BseMI	GCAATG	2 cut(s)	768, 774
BseMII	CTCAG	4 cut(s)	197, 252, 267, 653
BseNI	ACTGG	5 cut(s)	20, 325, 521, 746, 1138
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	4 cut(s)	232, 584, 1204, 1207
BshFI	GGCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	487
BsiSI	CCGG	4 cut(s)	149, 167, 189, 233
BslFI	GGGAC	1 cut(s)	232
BsmAI	GTCTC	3 cut(s)	111, 117, 568
BsmFI	GGGAC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	779
BsnI	GGCC	1 cut(s)	134
Bso31I	GGTCTC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp1407I	TGTACA	1 cut(s)	1002
Bsp143I	GATC	4 cut(s)	12, 315, 1086, 1119
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	4 cut(s)	198, 253, 268, 652
BspLI	GGNNCC	2 cut(s)	615, 904
BspPI	GGATC	1 cut(s)	1127
BspQI	GCTCTTC	1 cut(s)	1194
BspTNI	GGTCTC	1 cut(s)	117
BsrDI	GCAATG	2 cut(s)	768, 774
BsrFI	RCCGGY	1 cut(s)	232
BsrGI	TGTACA	1 cut(s)	1002
BsrI	ACTGG	5 cut(s)	20, 325, 521, 746, 1138
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	609
BssMI	GATC	4 cut(s)	12, 315, 1086, 1119
BssNAI	GTATAC	1 cut(s)	841
Bst1107I	GTATAC	1 cut(s)	841
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	4 cut(s)	144, 223, 449, 830
Bst6I	CTCTTC	1 cut(s)	1194
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstAUI	TGTACA	1 cut(s)	1002
BstC8I	GCNNGC	3 cut(s)	483, 1014, 1053
BstDEI	CTNAG	5 cut(s)	158, 206, 261, 276, 639
BstF5I	GGATG	2 cut(s)	876, 937
BstKTI	GATC	4 cut(s)	15, 318, 1089, 1122
BstMAI	GTCTC	3 cut(s)	111, 117, 568
BstMBI	GATC	4 cut(s)	12, 315, 1086, 1119
BstMWI	GCNNNNNNNGC	2 cut(s)	578, 1166
BstNI	CCWGG	1 cut(s)	611
BstNSI	RCATGY	2 cut(s)	551, 1055
BstSCI	CCNGG	1 cut(s)	609
BstSFI	CTRYAG	1 cut(s)	787
BstSLI	GKGCMC	1 cut(s)	487
BstV1I	GCAGC	4 cut(s)	232, 584, 1204, 1207
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	1119
BstXI	CCANNNNNNTGG	1 cut(s)	1027
BstYI	RGATCY	1 cut(s)	1119
BstZ17I	GTATAC	1 cut(s)	841
BsuRI	GGCC	1 cut(s)	134
BtsCI	GGATG	2 cut(s)	876, 937
BtsI	GCAGTG	1 cut(s)	509
BtsIMutI	CAGTG	3 cut(s)	318, 509, 719
Cac8I	GCNNGC	3 cut(s)	483, 1014, 1053
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	902
Csp6I	GTAC	4 cut(s)	445, 831, 1003, 1143
CviAII	CATG	5 cut(s)	337, 548, 553, 814, 1052
CviQI	GTAC	4 cut(s)	445, 831, 1003, 1143
DdeI	CTNAG	5 cut(s)	158, 206, 261, 276, 639
DpnI	GATC	4 cut(s)	14, 317, 1088, 1121
DpnII	GATC	4 cut(s)	12, 315, 1086, 1119
Eam1104I	CTCTTC	1 cut(s)	1194
EarI	CTCTTC	1 cut(s)	1194
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	902
Eco57I	CTGAAG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	902
EcoRII	CCWGG	1 cut(s)	609
FaeI	CATG	5 cut(s)	340, 551, 556, 817, 1055
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	5 cut(s)	336, 547, 552, 813, 1051
FbaI	TGATCA	2 cut(s)	12, 315
FblI	GTMKAC	3 cut(s)	176, 384, 840
Fnu4HI	GCNGC	4 cut(s)	246, 573, 1218, 1221
FokI	GGATG	2 cut(s)	863, 944
Fsp4HI	GCNGC	4 cut(s)	246, 573, 1218, 1221
GluI	GCNGC	4 cut(s)	246, 573, 1218, 1221
GsuI	CTGGAG	2 cut(s)	214, 632
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	4 cut(s)	149, 167, 189, 233
Hin1II	CATG	5 cut(s)	340, 551, 556, 817, 1055
HincII	GTYRAC	2 cut(s)	177, 200
HindII	GTYRAC	2 cut(s)	177, 200
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	1 cut(s)	196
HpaII	CCGG	4 cut(s)	149, 167, 189, 233
HphI	GGTGA	5 cut(s)	7, 60, 75, 132, 775
Hpy166II	GTNNAC	6 cut(s)	177, 200, 385, 445, 485, 841
Hpy188I	TCNGA	4 cut(s)	38, 253, 545, 970
Hpy188III	TCNNGA	4 cut(s)	296, 313, 349, 979
Hpy8I	GTNNAC	6 cut(s)	177, 200, 385, 445, 485, 841
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	6 cut(s)	96, 204, 235, 373, 893, 1207
HpyCH4III	ACNGT	4 cut(s)	144, 223, 449, 830
HpyCH4IV	ACGT	1 cut(s)	1075
HpyF10VI	GCNNNNNNNGC	2 cut(s)	578, 1166
HpyF3I	CTNAG	5 cut(s)	158, 206, 261, 276, 639
HpySE526I	ACGT	1 cut(s)	1075
Hsp92II	CATG	5 cut(s)	340, 551, 556, 817, 1055
Ksp22I	TGATCA	2 cut(s)	12, 315
Kzo9I	GATC	4 cut(s)	12, 315, 1086, 1119
LguI	GCTCTTC	1 cut(s)	1194
LmnI	GCTCC	3 cut(s)	32, 499, 613
Lsp1109I	GCAGC	4 cut(s)	232, 584, 1204, 1207
LweI	GCATC	5 cut(s)	664, 725, 885, 903, 922
MaeII	ACGT	1 cut(s)	1075
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	4 cut(s)	14, 317, 1088, 1121
MboI	GATC	4 cut(s)	12, 315, 1086, 1119
MboII	GAAGA	6 cut(s)	111, 325, 352, 613, 1211, 1222
MfeI	CAATTG	3 cut(s)	503, 936, 1155
MflI	RGATCY	1 cut(s)	1119
MhlI	GDGCHC	1 cut(s)	487
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	3 cut(s)	415, 448, 1039
MnlI	CCTC	5 cut(s)	64, 110, 133, 209, 271
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	1 cut(s)	1103
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	4 cut(s)	149, 167, 189, 233
MspR9I	CCNGG	1 cut(s)	611
MunI	CAATTG	3 cut(s)	503, 936, 1155
Mva1269I	GAATGC	1 cut(s)	779
MvaI	CCWGG	1 cut(s)	611
MwoI	GCNNNNNNNGC	2 cut(s)	578, 1166
NdeII	GATC	4 cut(s)	12, 315, 1086, 1119
NlaIII	CATG	5 cut(s)	340, 551, 556, 817, 1055
NlaIV	GGNNCC	2 cut(s)	615, 904
NmuCI	GTSAC	1 cut(s)	533
NspI	RCATGY	2 cut(s)	551, 1055
PaeI	GCATGC	1 cut(s)	1055
PciI	ACATGT	1 cut(s)	547
PciSI	GCTCTTC	1 cut(s)	1194
PctI	GAATGC	1 cut(s)	779
PkrI	GCNGC	4 cut(s)	247, 574, 1219, 1222
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PpuMI	RGGWCCY	1 cut(s)	902
PscI	ACATGT	1 cut(s)	547
Psp5II	RGGWCCY	1 cut(s)	902
Psp6I	CCWGG	1 cut(s)	609
PspGI	CCWGG	1 cut(s)	609
PspN4I	GGNNCC	2 cut(s)	615, 904
PspPI	GGNCC	1 cut(s)	902
PspPPI	RGGWCCY	1 cut(s)	902
PsuI	RGATCY	1 cut(s)	1119
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	4 cut(s)	446, 832, 1004, 1144
RsaNI	GTAC	4 cut(s)	445, 831, 1003, 1143
RseI	CAYNNNNRTG	1 cut(s)	1103
SalI	GTCGAC	1 cut(s)	175
SapI	GCTCTTC	1 cut(s)	1194
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	4 cut(s)	246, 573, 1218, 1221
Sau3AI	GATC	4 cut(s)	12, 315, 1086, 1119
Sau96I	GGNCC	1 cut(s)	902
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	611
SduI	GDGCHC	1 cut(s)	487
SetI	ASST	9 cut(s)	88, 131, 207, 293, 384, 577, 788, 1014, 1078
SfaNI	GCATC	5 cut(s)	664, 725, 885, 903, 922
SfcI	CTRYAG	1 cut(s)	787
SinI	GGWCC	1 cut(s)	902
SmiMI	CAYNNNNRTG	1 cut(s)	1103
SmlI	CTYRAG	3 cut(s)	101, 124, 296
SmoI	CTYRAG	3 cut(s)	101, 124, 296
SphI	GCATGC	1 cut(s)	1055
StyD4I	CCNGG	1 cut(s)	609
TaaI	ACNGT	4 cut(s)	144, 223, 449, 830
TaiI	ACGT	1 cut(s)	1078
TaqI	TCGA	1 cut(s)	176
TaqII	GACCGA	1 cut(s)	99
TatI	WGTACW	3 cut(s)	444, 830, 1002
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	3 cut(s)	325, 516, 726
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	4 cut(s)	245, 572, 1217, 1220
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	1 cut(s)	325
TspRI	CASTG	3 cut(s)	325, 516, 726
VneI	GTGCAC	1 cut(s)	483
VpaK11BI	GGWCC	1 cut(s)	902
XapI	RAATTY	3 cut(s)	48, 302, 959
XceI	RCATGY	2 cut(s)	551, 1055
XcmI	CCANNNNNNNNNTGG	2 cut(s)	607, 820
XmiI	GTMKAC	3 cut(s)	176, 384, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.