Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003212

Physical Location & Seq

Genomic Coordinates Reverse (-)

5940833 .. 5943932

Gene Structure 3100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG068600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTGGTACTTTCTGAACGTGATTTTCAACATTCTAAACAAGAAGATCTACAATTACTTCCCGTATCCATACTTCGTGTCGGTGATACACTTGGGAGTTGGGGTGATTTACTGTCTGATCAGCTGGGCCGTGGGCCTTCCTAAGCGCGCTCCTATGGACTCGAACCAATTGAAGTTGCTCATCCCTGTTGCGGTGTGTCACGCAATCGGTCACGTCACGAGCAATGTCTCATTTGCGGCCGTTGCCGTCTCATTCACACACACCATCAAAGCTCTTGAGCCATTTTTCAATGCCTCTGCTTCTCAGTTCGTGCTTGGACAGTCAATCCCCTTGTCCTTGTGGTTGTCTCTGCTTCCTGTTGTTCTTGGTGTGTCAATGGCATCACTCACTGAGTTGTCATTCAACTGGCTTGGCTTCATTAGTGCTATGATTTCAAATATCTCCTTCACTTACAGGAGTATCTATTCGAAGAAAGCCATGACTGATATGGATAGCACCAATTTGTATGCCTACATTTCAATCATCGCACTCTTTGTCTGCATTCCACCTGCTCTCATTGTGGAGGGACCTCAACTGCTTAAGCACGGTTTTGCTGATGCAATTGCTAAAGTAGGCCTTGTCAAGTTTGTTACTGACCTCTTCTGGGTGGGGTTGTTTTACCATCTCTACAATCAGCTGGCCACCAACACCCTTGAGAGAGTGGCTCCTCTTACACACGCAGTTGGAAATGTGTTGAAACGTGTGTTTGTGATTGGCTTCTCAATTGTGGTCTTTGGTAACAAGATTTCAACACAAACTGGTATTGGAACGGGCATTGCAATTGCTGGAGTTGCTATCTACTCGTACCTCAAGGCCAAGATAGAGGAAGAGAAACGGCAAGCGAAAGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009643 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

297

Amino Acids

32.67

Weight (kDa)

9.39

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	1 - 281	8.3e-109	Triose-phosphate Transporter family
EamA	PF00892	137 - 281	6.1e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46110 AT5G46110 AT5G46110 AT5G46110
fragaria_vesca	FvH4_3g08560 FvH4_3g08560 FvH4_4g30170
malus_domestica	MD05G1310100.v1.1 MD10G1289000.v1.1 MD16G1061900.v1.1
prunus_persica	Prupe.1G286000_v2.0.a1 Prupe.4G052700_v2.0.a1 Prupe.4G052700_v2.0.a1 Prupe.4G052700_v2.0.a1
pyrus_communis	pycom05g28650 pycom10g24160 pycom13g05580 pycom16g05410
rosa_chinensis	RchiOBHm_Chr4g0438501 RchiOBHm_Chr5g0009281
rosa_laevigata	RLG00000006358 RLG00000031644
rosa_multiflora	Rmu_co8445077.1_g000001 Rmu_sc0002327.1_g000018 Rmu_sc0006233.1_g000012
rosa_roxburghii	Rroxscaffold_1G00066810 Rroxscaffold_1G00067510 Rroxscaffold_5G00379510
rosa_rugosa	Rorug04G0310400 Rorug04G0441700 Rorug04G0441700
rosa_samantha	Rh4AG361200 Rh5AG071900 Rh5DG068600
rosa_wichuraiana	Rw0G006600 Rw0G016550 Rw5G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	556
Acc36I	ACCTGC	1 cut(s)	556
AccII	CGCG	1 cut(s)	147
AciI	CCGC	2 cut(s)	191, 236
AcoI	YGGCCR	2 cut(s)	237, 678
AfaI	GTAC	2 cut(s)	8, 845
AfiI	CCNNNNNNNGG	2 cut(s)	190, 643
AflII	CTTAAG	1 cut(s)	578
AflIII	ACRYGT	1 cut(s)	739
AgsI	TTSAA	8 cut(s)	28, 172, 289, 403, 435, 519, 736, 789
AjiI	CACGTC	1 cut(s)	214
AluBI	AGCT	4 cut(s)	123, 272, 676, 887
AluI	AGCT	4 cut(s)	123, 272, 676, 887
Alw26I	GTCTC	3 cut(s)	232, 253, 351
AoxI	GGCC	6 cut(s)	126, 133, 237, 613, 678, 852
ApeKI	GCWGC	1 cut(s)	887
AspLEI	GCGC	2 cut(s)	147, 149
AspS9I	GGNCC	3 cut(s)	126, 133, 566
AsuHPI	GGTGA	2 cut(s)	94, 115
AsuII	TTCGAA	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	566
BaeI	ACNNNNGTAYC	2 cut(s)	442, 475
BalI	TGGCCA	1 cut(s)	680
BarI	GAAGNNNNNNTAC	2 cut(s)	56, 88
BauI	CACGAG	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	874
BccI	CCATC	2 cut(s)	272, 669
BceAI	ACGGC	4 cut(s)	113, 224, 230, 890
BciVI	GTATCC	1 cut(s)	75
BclI	TGATCA	1 cut(s)	117
BcoDI	GTCTC	3 cut(s)	232, 253, 351
BfrI	CTTAAG	1 cut(s)	578
BfuAI	ACCTGC	1 cut(s)	556
BfuI	GTATCC	1 cut(s)	75
BglII	AGATCT	1 cut(s)	45
BisI	GCNGC	2 cut(s)	237, 888
BlsI	GCNGC	2 cut(s)	238, 889
Bme18I	GGWCC	1 cut(s)	566
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	3 cut(s)	126, 133, 566
BmiI	GGNNCC	2 cut(s)	567, 705
BmsI	GCATC	2 cut(s)	389, 586
BplI	GAGNNNNNCTC	2 cut(s)	688, 720
BpmI	CTGGAG	1 cut(s)	846
Bpu10I	CCTNAGC	1 cut(s)	141
Bpu14I	TTCGAA	1 cut(s)	467
BpuEI	CTTGAG	3 cut(s)	296, 713, 833
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 643
Bse1I	ACTGG	2 cut(s)	410, 802
Bse3DI	GCAATG	2 cut(s)	229, 813
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	190, 643
BseMI	GCAATG	2 cut(s)	229, 813
BseMII	CTCAG	2 cut(s)	317, 381
BseNI	ACTGG	2 cut(s)	410, 802
BsePI	GCGCGC	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	696
BseX3I	CGGCCG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	874
BseYI	CCCAGC	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	147
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	6 cut(s)	128, 135, 239, 615, 680, 854
BsiEI	CGRYCG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	2 cut(s)	190, 643
BsmAI	GTCTC	3 cut(s)	232, 253, 351
BsmBI	CGTCTC	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	579
BsmI	GAATGC	1 cut(s)	540
BsnI	GGCC	6 cut(s)	128, 135, 239, 615, 680, 854
Bsp119I	TTCGAA	1 cut(s)	467
Bsp143I	GATC	2 cut(s)	45, 117
BspACI	CCGC	2 cut(s)	191, 236
BspANI	GGCC	6 cut(s)	128, 135, 239, 615, 680, 854
BspCNI	CTCAG	2 cut(s)	316, 382
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	567, 705
BspMI	ACCTGC	1 cut(s)	556
BspT104I	TTCGAA	1 cut(s)	467
BspTI	CTTAAG	1 cut(s)	578
BsrDI	GCAATG	2 cut(s)	229, 813
BsrI	ACTGG	2 cut(s)	410, 802
BssECI	CCNNGG	1 cut(s)	129
BssHII	GCGCGC	1 cut(s)	145
BssMI	GATC	2 cut(s)	45, 117
BssSI	CACGAG	1 cut(s)	217
Bst2BI	CACGAG	1 cut(s)	217
Bst4CI	ACNGT	3 cut(s)	113, 321, 587
Bst6I	CTCTTC	2 cut(s)	644, 861
BstAFI	CTTAAG	1 cut(s)	578
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	3 cut(s)	147, 678, 879
BstDEI	CTNAG	3 cut(s)	141, 303, 390
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	2 cut(s)	147, 149
BstKTI	GATC	2 cut(s)	48, 120
BstMAI	GTCTC	3 cut(s)	232, 253, 351
BstMBI	GATC	2 cut(s)	45, 117
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 830, 887
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	874
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
BstZI	CGGCCG	1 cut(s)	237
BsuI	GTATCC	1 cut(s)	75
BsuRI	GGCC	6 cut(s)	128, 135, 239, 615, 680, 854
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	508
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	556
Cac8I	GCNNGC	3 cut(s)	147, 678, 879
CfoI	GCGC	2 cut(s)	147, 149
Cfr13I	GGNCC	3 cut(s)	126, 133, 566
Csp6I	GTAC	2 cut(s)	7, 844
CviAII	CATG	2 cut(s)	478, 891
CviQI	GTAC	2 cut(s)	7, 844
DdeI	CTNAG	3 cut(s)	141, 303, 390
DpnI	GATC	2 cut(s)	47, 119
DpnII	GATC	2 cut(s)	45, 117
EaeI	YGGCCR	2 cut(s)	237, 678
EagI	CGGCCG	1 cut(s)	237
Eam1104I	CTCTTC	2 cut(s)	644, 861
EarI	CTCTTC	2 cut(s)	644, 861
EclXI	CGGCCG	1 cut(s)	237
Eco147I	AGGCCT	1 cut(s)	615
Eco47I	GGWCC	1 cut(s)	566
Eco52I	CGGCCG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	566
Esp3I	CGTCTC	1 cut(s)	253
FaeI	CATG	2 cut(s)	481, 894
FaiI	YATR	7 cut(s)	70, 155, 428, 479, 488, 507, 892
FalI	AAGNNNNNCTT	2 cut(s)	600, 632
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	2 cut(s)	477, 890
FbaI	TGATCA	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	237, 888
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	237, 888
GlaI	GCGC	2 cut(s)	146, 148
GluI	GCNGC	2 cut(s)	237, 888
GsaI	CCCAGC	1 cut(s)	127
GsuI	CTGGAG	1 cut(s)	846
HaeIII	GGCC	6 cut(s)	128, 135, 239, 615, 680, 854
HhaI	GCGC	2 cut(s)	147, 149
Hin1II	CATG	2 cut(s)	481, 894
Hin6I	GCGC	2 cut(s)	145, 147
HinP1I	GCGC	2 cut(s)	145, 147
HinfI	GANTC	1 cut(s)	158
HphI	GGTGA	2 cut(s)	94, 115
Hpy188I	TCNGA	2 cut(s)	15, 117
Hpy188III	TCNNGA	2 cut(s)	217, 275
HpyAV	CCTTC	2 cut(s)	146, 454
HpyCH4III	ACNGT	3 cut(s)	113, 321, 587
HpyCH4IV	ACGT	3 cut(s)	18, 213, 739
HpyCH4V	TGCA	4 cut(s)	540, 599, 818, 890
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 830, 887
HpyF3I	CTNAG	3 cut(s)	141, 303, 390
HpySE526I	ACGT	3 cut(s)	18, 213, 739
Hsp92II	CATG	2 cut(s)	481, 894
HspAI	GCGC	2 cut(s)	145, 147
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	45, 117
LmnI	GCTCC	2 cut(s)	154, 709
Lsp1109I	GCAGC	1 cut(s)	874
LweI	GCATC	2 cut(s)	389, 586
MaeII	ACGT	3 cut(s)	18, 213, 739
MaeIII	GTNAC	5 cut(s)	197, 209, 214, 628, 776
MalI	GATC	2 cut(s)	47, 119
MboI	GATC	2 cut(s)	45, 117
MboII	GAAGA	4 cut(s)	55, 481, 631, 878
MfeI	CAATTG	4 cut(s)	167, 600, 762, 819
MflI	RGATCY	1 cut(s)	45
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	6 cut(s)	52, 167, 499, 600, 762, 819
MluNI	TGGCCA	1 cut(s)	680
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	703
MnlI	CCTC	7 cut(s)	304, 556, 579, 647, 717, 856, 857
Mox20I	TGGCCA	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	1 cut(s)	579
Msp20I	TGGCCA	1 cut(s)	680
MspA1I	CMGCKG	2 cut(s)	123, 676
MspCI	CTTAAG	1 cut(s)	578
MunI	CAATTG	4 cut(s)	167, 600, 762, 819
Mva1269I	GAATGC	1 cut(s)	540
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	3 cut(s)	242, 830, 887
NdeII	GATC	2 cut(s)	45, 117
NlaIII	CATG	2 cut(s)	481, 894
NlaIV	GGNNCC	2 cut(s)	567, 705
NmuCI	GTSAC	3 cut(s)	197, 209, 214
NspV	TTCGAA	1 cut(s)	467
PaqCI	CACCTGC	1 cut(s)	556
PauI	GCGCGC	1 cut(s)	145
PceI	AGGCCT	1 cut(s)	615
PctI	GAATGC	1 cut(s)	540
PkrI	GCNGC	2 cut(s)	238, 889
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PpuMI	RGGWCCY	1 cut(s)	566
Psp5II	RGGWCCY	1 cut(s)	566
PspFI	CCCAGC	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	567, 705
PspPI	GGNCC	3 cut(s)	126, 133, 566
PspPPI	RGGWCCY	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	45
PteI	GCGCGC	1 cut(s)	145
PvuII	CAGCTG	2 cut(s)	123, 676
RsaI	GTAC	2 cut(s)	8, 845
RsaNI	GTAC	2 cut(s)	7, 844
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	2 cut(s)	237, 888
Sau3AI	GATC	2 cut(s)	45, 117
Sau96I	GGNCC	3 cut(s)	126, 133, 566
SchI	GAGTC	1 cut(s)	152
SfaNI	GCATC	2 cut(s)	389, 586
SfuI	TTCGAA	1 cut(s)	467
SinI	GGWCC	1 cut(s)	566
SmlI	CTYRAG	4 cut(s)	275, 578, 692, 848
SmoI	CTYRAG	4 cut(s)	275, 578, 692, 848
Sse9I	AATT	6 cut(s)	52, 167, 499, 600, 762, 819
SseBI	AGGCCT	1 cut(s)	615
SsiI	CCGC	2 cut(s)	191, 236
StuI	AGGCCT	1 cut(s)	615
TaaI	ACNGT	3 cut(s)	113, 321, 587
TaiI	ACGT	3 cut(s)	21, 216, 742
TaqI	TCGA	2 cut(s)	161, 467
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	6 cut(s)	52, 167, 499, 600, 762, 819
TauI	GCSGC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	3 cut(s)	197, 209, 214
TseI	GCWGC	1 cut(s)	887
Tsp45I	GTSAC	3 cut(s)	197, 209, 214
TspDTI	ATGAA	1 cut(s)	406
TspRI	CASTG	1 cut(s)	394
Vha464I	CTTAAG	1 cut(s)	578
VpaK11BI	GGWCC	1 cut(s)	566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.