Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003212

Physical Location & Seq

Genomic Coordinates Reverse (-)

3689918 .. 3691663

Gene Structure 1746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05580.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCTTCAGTGATCAACCAAGTTCACTCTCCAATCCGAACTTCTCTATTTTCTTCGCTTTATTTATCGTCCAATAAGATTTCGCCTTCTTTGGCTTTGCTCAAAGTTCGCTCGCTTTCTTCCAGAGCTTCAAGCTTGGCCTTTTTGCCGTTGCCGGAGGCTGCAAAGCCTTCACCGGAAATTGGATTTTCTGGCAAGGGATTGAAGTTTTCAGGGTGGAGTCAGCAGCTGAGACGGCTGGGCTCTGTTGAGTTGCTGCCGGTTGCTAAGGCTGCAGCTGCGGATGCTGATGGTGCTGAGATTGAAATTGCTGATGGGTATGGGAAGCCTGCAAAGAGTTTTTCTGAGAAATTTCCTTTCCTGATTACCGGTTTCTTTTTCTTCATGTGTTTTGTTTCTGTTATACATCTCCTTGTTGGAGTGGTGTACTGTCTTGTTTCTTGGTCCGCTGGCTTGCCAAGGCGCGCACCGATTGACAAGGAGCAGTTGGCGCTACTGACCCCGGTTGCATTCTGTCACGCCCTCGGACATGTCATGTCCAATGTTTCATTTGCAGCTGTTGCTGTGTCTTTCACACGCACCATTAAAGGTATTATCTTTAAGGGCCGTTGGAAAACCAATTCCTTAGTAAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009642 GO:0009643 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042170 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

213

Amino Acids

22.88

Weight (kDa)

10.06

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46110 AT5G46110 AT5G46110 AT5G46110
fragaria_vesca	FvH4_3g08560 FvH4_3g08560 FvH4_4g30170
malus_domestica	MD05G1310100.v1.1 MD10G1289000.v1.1 MD16G1061900.v1.1
prunus_persica	Prupe.1G286000_v2.0.a1 Prupe.4G052700_v2.0.a1 Prupe.4G052700_v2.0.a1 Prupe.4G052700_v2.0.a1
pyrus_communis	pycom05g28650 pycom10g24160 pycom13g05580 pycom16g05410
rosa_chinensis	RchiOBHm_Chr4g0438501 RchiOBHm_Chr5g0009281
rosa_laevigata	RLG00000006358 RLG00000031644
rosa_multiflora	Rmu_co8445077.1_g000001 Rmu_sc0002327.1_g000018 Rmu_sc0006233.1_g000012
rosa_roxburghii	Rroxscaffold_1G00066810 Rroxscaffold_1G00067510 Rroxscaffold_5G00379510
rosa_rugosa	Rorug04G0310400 Rorug04G0441700 Rorug04G0441700
rosa_samantha	Rh4AG361200 Rh5AG071900 Rh5DG068600
rosa_wichuraiana	Rw0G006600 Rw0G016550 Rw5G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	465
AciI	CCGC	2 cut(s)	281, 447
AcsI	RAATTY	1 cut(s)	350
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	529
AgeI	ACCGGT	1 cut(s)	368
AgsI	TTSAA	3 cut(s)	132, 205, 305
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AluBI	AGCT	5 cut(s)	128, 135, 229, 278, 557
AluI	AGCT	5 cut(s)	128, 135, 229, 278, 557
Alw26I	GTCTC	1 cut(s)	226
AlwNI	CAGNNNCTG	1 cut(s)	229
AoxI	GGCC	2 cut(s)	138, 604
ApeKI	GCWGC	7 cut(s)	161, 226, 256, 272, 275, 278, 554
ApoI	RAATTY	1 cut(s)	350
AsiGI	ACCGGT	1 cut(s)	368
AspLEI	GCGC	3 cut(s)	465, 467, 493
AspS9I	GGNCC	2 cut(s)	444, 604
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	444
BanII	GRGCYC	1 cut(s)	245
BbvI	GCAGC	7 cut(s)	148, 238, 243, 259, 265, 287, 566
BccI	CCATC	2 cut(s)	284, 308
BceAI	ACGGC	3 cut(s)	133, 251, 591
BclI	TGATCA	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	1 cut(s)	226
BfmI	CTRYAG	1 cut(s)	273
BfoI	RGCGCY	1 cut(s)	494
BisI	GCNGC	7 cut(s)	162, 227, 257, 273, 276, 279, 555
BlsI	GCNGC	7 cut(s)	163, 228, 258, 274, 277, 280, 556
Bme1390I	CCNGG	1 cut(s)	503
Bme18I	GGWCC	1 cut(s)	444
BmgT120I	GGNCC	2 cut(s)	444, 604
BmrFI	CCNGG	1 cut(s)	503
BmsI	GCATC	1 cut(s)	274
Bpu10I	CCTNAGC	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	503
BsaJI	CCNNGG	3 cut(s)	458, 501, 523
BsaWI	WCCGGW	2 cut(s)	175, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse118I	RCCGGY	2 cut(s)	259, 368
BseDI	CCNNGG	3 cut(s)	458, 501, 523
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	3 cut(s)	221, 288, 336
BsePI	GCGCGC	1 cut(s)	463
BseXI	GCAGC	7 cut(s)	148, 238, 243, 259, 265, 287, 566
BseYI	CCCAGC	1 cut(s)	238
Bsh1236I	CGCG	1 cut(s)	465
BshFI	GGCC	2 cut(s)	140, 606
BshTI	ACCGGT	1 cut(s)	368
BsiSI	CCGG	5 cut(s)	155, 176, 260, 369, 503
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	226
BsmBI	CGTCTC	1 cut(s)	226
BsmI	GAATGC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	140, 606
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	2 cut(s)	281, 447
BspANI	GGCC	2 cut(s)	140, 606
BspCNI	CTCAG	3 cut(s)	222, 289, 337
BspFNI	CGCG	1 cut(s)	465
BspMAI	CTGCAG	1 cut(s)	277
BsrFI	RCCGGY	2 cut(s)	259, 368
BssAI	RCCGGY	2 cut(s)	259, 368
BssECI	CCNNGG	3 cut(s)	458, 501, 523
BssHII	GCGCGC	1 cut(s)	463
BssMI	GATC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	458
Bst4CI	ACNGT	1 cut(s)	431
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstC8I	GCNNGC	5 cut(s)	113, 330, 451, 455, 465
BstDEI	CTNAG	5 cut(s)	230, 267, 297, 345, 625
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	465
BstH2I	RGCGCY	1 cut(s)	494
BstHHI	GCGC	3 cut(s)	465, 467, 493
BstKTI	GATC	1 cut(s)	15
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	7 cut(s)	235, 272, 278, 284, 293, 490, 560
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	501
BstSFI	CTRYAG	1 cut(s)	273
BstUI	CGCG	1 cut(s)	465
BstV1I	GCAGC	7 cut(s)	148, 238, 243, 259, 265, 287, 566
BsuRI	GGCC	2 cut(s)	140, 606
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	5 cut(s)	113, 330, 451, 455, 465
CaiI	CAGNNNCTG	1 cut(s)	229
CfoI	GCGC	3 cut(s)	465, 467, 493
Cfr10I	RCCGGY	2 cut(s)	259, 368
Cfr13I	GGNCC	2 cut(s)	444, 604
Csp6I	GTAC	1 cut(s)	427
CspAI	ACCGGT	1 cut(s)	368
CviAII	CATG	3 cut(s)	385, 530, 535
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	5 cut(s)	230, 267, 297, 345, 625
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	458
Eco24I	GRGCYC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	444
EcoT14I	CCWWGG	1 cut(s)	458
EcoT38I	GRGCYC	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	458
Esp3I	CGTCTC	1 cut(s)	226
FaeI	CATG	3 cut(s)	388, 533, 538
FaiI	YATR	5 cut(s)	321, 386, 404, 531, 536
FatI	CATG	3 cut(s)	384, 529, 534
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	7 cut(s)	162, 227, 257, 273, 276, 279, 555
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	7 cut(s)	162, 227, 257, 273, 276, 279, 555
GlaI	GCGC	3 cut(s)	464, 466, 492
GluI	GCNGC	7 cut(s)	162, 227, 257, 273, 276, 279, 555
GsaI	CCCAGC	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	494
HaeIII	GGCC	2 cut(s)	140, 606
HapII	CCGG	5 cut(s)	155, 176, 260, 369, 503
HhaI	GCGC	3 cut(s)	465, 467, 493
Hin1II	CATG	3 cut(s)	388, 533, 538
Hin6I	GCGC	3 cut(s)	463, 465, 491
HinP1I	GCGC	3 cut(s)	463, 465, 491
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	5 cut(s)	155, 176, 260, 369, 503
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	2 cut(s)	25, 427
Hpy188I	TCNGA	3 cut(s)	38, 346, 527
Hpy188III	TCNNGA	2 cut(s)	123, 361
Hpy8I	GTNNAC	2 cut(s)	25, 427
HpyAV	CCTTC	2 cut(s)	96, 180
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4V	TGCA	5 cut(s)	164, 275, 332, 509, 554
HpyF10VI	GCNNNNNNNGC	7 cut(s)	235, 272, 278, 284, 293, 490, 560
HpyF3I	CTNAG	5 cut(s)	230, 267, 297, 345, 625
Hsp92II	CATG	3 cut(s)	388, 533, 538
HspAI	GCGC	3 cut(s)	463, 465, 491
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	7 cut(s)	148, 238, 243, 259, 265, 287, 566
LweI	GCATC	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	3 cut(s)	45, 111, 373
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	4 cut(s)	180, 306, 350, 619
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	2 cut(s)	397, 590
MnlI	CCTC	2 cut(s)	151, 533
MseI	TTAA	2 cut(s)	585, 600
MspA1I	CMGCKG	4 cut(s)	229, 278, 449, 557
MspI	CCGG	5 cut(s)	155, 176, 260, 369, 503
MspR9I	CCNGG	1 cut(s)	503
Mva1269I	GAATGC	1 cut(s)	509
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	7 cut(s)	235, 272, 278, 284, 293, 490, 560
NciI	CCSGG	1 cut(s)	503
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	3 cut(s)	388, 533, 538
NmuCI	GTSAC	1 cut(s)	515
NspI	RCATGY	1 cut(s)	533
PauI	GCGCGC	1 cut(s)	463
PciI	ACATGT	1 cut(s)	529
PctI	GAATGC	1 cut(s)	509
PinAI	ACCGGT	1 cut(s)	368
PkrI	GCNGC	7 cut(s)	163, 228, 258, 274, 277, 280, 556
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PscI	ACATGT	1 cut(s)	529
PspFI	CCCAGC	1 cut(s)	238
PspPI	GGNCC	2 cut(s)	444, 604
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	229
PteI	GCGCGC	1 cut(s)	463
PvuII	CAGCTG	3 cut(s)	229, 278, 557
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SaqAI	TTAA	2 cut(s)	585, 600
SatI	GCNGC	7 cut(s)	162, 227, 257, 273, 276, 279, 555
Sau3AI	GATC	1 cut(s)	12
Sau96I	GGNCC	2 cut(s)	444, 604
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	6 cut(s)	130, 137, 231, 280, 559, 592
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	273
SinI	GGWCC	1 cut(s)	444
Sse9I	AATT	4 cut(s)	180, 306, 350, 619
SsiI	CCGC	2 cut(s)	281, 447
StyD4I	CCNGG	1 cut(s)	501
StyI	CCWWGG	1 cut(s)	458
TaaI	ACNGT	1 cut(s)	431
TasI	AATT	4 cut(s)	180, 306, 350, 619
TatI	WGTACW	1 cut(s)	426
Tru1I	TTAA	2 cut(s)	585, 600
Tru9I	TTAA	2 cut(s)	585, 600
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	7 cut(s)	161, 226, 256, 272, 275, 278, 554
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	2 cut(s)	373, 537
TspRI	CASTG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	444
XapI	RAATTY	1 cut(s)	350
XceI	RCATGY	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.