Rorug04G0310400

Triose phosphate phosphate translocator

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
48603103 .. 48604182
1080 bp
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UTR
Exon/CDS
Intron
Rorug04G0310400.1

Sequence Viewer

Length: 249 bp
ATGGGAATAATGATCTGCCAATATTTGATTGTAATCCCAGCTCGATCAACTTCCAAACAGGGCGTACCTAAACAACCGGGTGGAGTTGAGTGTGGCTATTGTGTAATGCGATACATGAAGGACATTATAAATGATGACACGCTTTCATTTCCGACCAAGTGGGCAGCGAAGACTCGGAAAGTATACACCCAAGATGAACTTGACGAGGTCCGCATTGAAGTAGCTGACTATTTGCAGACTTTGCTATAG

Protein Analysis

82

Amino Acids

9.35

Weight (kDa)

6.15

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 128
AccI GTMKAC 1 cut(s) 183
AciI CCGC 1 cut(s) 211
AfaI GTAC 1 cut(s) 66
AgsI TTSAA 1 cut(s) 218
AluBI AGCT 2 cut(s) 41, 224
AluI AGCT 2 cut(s) 41, 224
ApeKI GCWGC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 78
AvaII GGWCC 1 cut(s) 208
BbsI GAAGAC 1 cut(s) 176
BbvI GCAGC 1 cut(s) 176
BcnI CCSGG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 245
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 78
BsaBI GATNNNNATC 1 cut(s) 32
Bse8I GATNNNNATC 1 cut(s) 32
BseJI GATNNNNATC 1 cut(s) 32
BseXI GCAGC 1 cut(s) 176
BseYI CCCAGC 1 cut(s) 37
BsiSI CCGG 1 cut(s) 77
Bsp143I GATC 2 cut(s) 12, 44
BspACI CCGC 1 cut(s) 211
BssMI GATC 2 cut(s) 12, 44
BssNAI GTATAC 1 cut(s) 184
Bst1107I GTATAC 1 cut(s) 184
BstAPI GCANNNNNTGC 1 cut(s) 241
BstKTI GATC 2 cut(s) 15, 47
BstMBI GATC 2 cut(s) 12, 44
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 76
BstSFI CTRYAG 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 176
BstV2I GAAGAC 1 cut(s) 176
BstZ17I GTATAC 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 65
CviAII CATG 1 cut(s) 115
CviJI RGCY 3 cut(s) 41, 96, 224
CviKI_1 RGCY 3 cut(s) 41, 96, 224
CviQI GTAC 1 cut(s) 65
DpnI GATC 2 cut(s) 14, 46
DpnII GATC 2 cut(s) 12, 44
Eco47I GGWCC 1 cut(s) 208
FaeI CATG 1 cut(s) 118
FaiI YATR 4 cut(s) 116, 128, 184, 247
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FatI CATG 1 cut(s) 114
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 165
GsaI CCCAGC 1 cut(s) 41
HapII CCGG 1 cut(s) 77
Hin1II CATG 1 cut(s) 118
HinfI GANTC 1 cut(s) 172
HpaII CCGG 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 153, 177
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 112
HpyCH4V TGCA 1 cut(s) 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
Hsp92II CATG 1 cut(s) 118
Kzo9I GATC 2 cut(s) 12, 44
LpnPI CCDG 3 cut(s) 44, 51, 90
Lsp1109I GCAGC 1 cut(s) 176
MalI GATC 2 cut(s) 14, 46
MboI GATC 2 cut(s) 12, 44
MboII GAAGA 1 cut(s) 181
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 1 cut(s) 199
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 241
NciI CCSGG 1 cut(s) 78
NdeII GATC 2 cut(s) 12, 44
NlaIII CATG 1 cut(s) 118
PflFI GACNNNGTC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PsiI TTATAA 1 cut(s) 128
PspFI CCCAGC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 208
PsyI GACNNNGTC 1 cut(s) 206
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 2 cut(s) 12, 44
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 78
SetI ASST 4 cut(s) 43, 70, 210, 226
SfcI CTRYAG 1 cut(s) 245
SinI GGWCC 1 cut(s) 208
SsiI CCGC 1 cut(s) 211
SspI AATATT 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 76
TaqI TCGA 1 cut(s) 43
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 3 cut(s) 131, 135, 210
Tth111I GACNNNGTC 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.