Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003212

Physical Location & Seq

Genomic Coordinates Reverse (-)

3505174 .. 3507784

Gene Structure 2611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGCTTCATTGATCAACCCAGTTCATTCTCCAACCCGAACTTCTCAGTTTTCTTCGCTGTATTTATCGTCCAAAAAGATTTCGCCTTCTTTTGCCCTGCTCAAAGTTCGCTCGCTTTCTTTCAGAGCTTCAGGCTTGGCCTTTTCTCCGTTGCCGGAGGCTGTAAAGCCCTTACCGGCAGTTGGGTTTTCCGGCAAGGGGTTGAAGTTTTCAGGGTGGAGTCAGCAGCTGAGACGGCGGGGCTCTGTTGAGTTGCTGCCGGTTGCTAAGGCTGCAGCTGCCGATGCTGATGGTGCTGAGATTGAAATTGCTGATGGGTATGGGAAGCCTACAAAGAGCTTTTCTGAGAAATTTCCTTTTCTGATCACCGGCTTCTTTTTCTTCATGTGGTACTTGTTAAATGTCATCTTCAACATACTCAACAAGAAGGTCTACAATTATTTCCCATATCCATATTTTGTTTCTGTTATACATCTCCTTGTTGGAGTGGTGTACTGTCTCGTTTCTTGGTCCGTTGGCTTGCCGAAGCGCGCACCGATTGACAAGGAGCAGTTGGCTCTGCTGACCCCGGTTGCATTCTGTCACGCCCTCGGACATGTCATGTCCAATGTGTCATTTGCAGCCGTGGCTGTGTCTTTCACGCACACTATTAAAGCCCTGGAGCCGTTCTTCAATGCATCTGCTTCTCAGTTTGTTTTGGGGCATCACATTCCCTTGTCCCTGTGGCTGTCATTGGCCCCTGTCGTGATCGGTGTGTCCATGGCATCATTGACTGAACTTTCTTTCAACTGGCTTGGCTTCGGCAGTGCGATGATTTCAAACATTGCATTCACCTATAGAAGTATCTATTCAAAAAAAGCAATGACAGGAATGGACAGTACAAATGTGTATGCGTACATTTCAATCATTGCTCTCTTGGTTTGCATCCCACCAGCAATACTCATTGAAGGACCCCAACTGCTGCAATATGGATTTAAGGATGCTATAGCCAAAGTAGGTCTCTACAAATTTGTCTCTGATTTATTCTGGATTGGAATGTTCTATCATCTGTACAATCAGCTTGCTACTAACACTTTGGAACGGGTTGCACCACTAACGCACGCAGTCGGAAATGTGTTGAAGCGTGTTTTCGTGATCGGGTTCTCCATTGTTGTGTTTGGCAACAAAATCTCTACACAAACTGGGATTGGAACTGCCATCGCAATTGCTGGTGTTGCCATCTACTCCTTAATCAAAGCAAACTTGGAAGAGCAAAAACGGAAGGCTGCTGCAGTTTCTGCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009642 GO:0009643 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042170 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

429

Amino Acids

46.64

Weight (kDa)

9.67

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46110 AT5G46110 AT5G46110 AT5G46110
fragaria_vesca	FvH4_3g08560 FvH4_3g08560 FvH4_4g30170
malus_domestica	MD05G1310100.v1.1 MD10G1289000.v1.1 MD16G1061900.v1.1
prunus_persica	Prupe.1G286000_v2.0.a1 Prupe.4G052700_v2.0.a1 Prupe.4G052700_v2.0.a1 Prupe.4G052700_v2.0.a1
pyrus_communis	pycom05g28650 pycom10g24160 pycom13g05580 pycom16g05410
rosa_chinensis	RchiOBHm_Chr4g0438501 RchiOBHm_Chr5g0009281
rosa_laevigata	RLG00000006358 RLG00000031644
rosa_multiflora	Rmu_co8445077.1_g000001 Rmu_sc0002327.1_g000018 Rmu_sc0006233.1_g000012
rosa_roxburghii	Rroxscaffold_1G00066810 Rroxscaffold_1G00067510 Rroxscaffold_5G00379510
rosa_rugosa	Rorug04G0310400 Rorug04G0441700 Rorug04G0441700
rosa_samantha	Rh4AG361200 Rh5AG071900 Rh5DG068600
rosa_wichuraiana	Rw0G006600 Rw0G016550 Rw5G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	432
AccII	CGCG	1 cut(s)	531
AciI	CCGC	1 cut(s)	238
AcsI	RAATTY	2 cut(s)	350, 1007
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	5 cut(s)	392, 494, 880, 896, 1052
AfiI	CCNNNNNNNGG	2 cut(s)	182, 198
AflIII	ACRYGT	1 cut(s)	595
AjnI	CCWGG	1 cut(s)	657
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AluBI	AGCT	5 cut(s)	128, 229, 278, 339, 1060
AluI	AGCT	5 cut(s)	128, 229, 278, 339, 1060
Alw26I	GTCTC	4 cut(s)	226, 503, 1004, 1018
AlwNI	CAGNNNCTG	2 cut(s)	229, 1277
AoxI	GGCC	2 cut(s)	138, 735
ApeKI	GCWGC	9 cut(s)	226, 256, 272, 275, 278, 620, 961, 1265, 1268
ApoI	RAATTY	2 cut(s)	350, 1007
AspLEI	GCGC	2 cut(s)	531, 533
AspS9I	GGNCC	3 cut(s)	510, 736, 950
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	2 cut(s)	358, 823
AvaII	GGWCC	2 cut(s)	510, 950
BanII	GRGCYC	1 cut(s)	245
BbvI	GCAGC	9 cut(s)	238, 243, 259, 265, 287, 632, 948, 1252, 1255
BccI	CCATC	4 cut(s)	284, 308, 1205, 1226
BceAI	ACGGC	3 cut(s)	251, 608, 649
BciT130I	CCWGG	1 cut(s)	659
BclI	TGATCA	2 cut(s)	12, 363
BcnI	CCSGG	1 cut(s)	569
BcoDI	GTCTC	4 cut(s)	226, 503, 1004, 1018
BfmI	CTRYAG	4 cut(s)	273, 835, 984, 1269
BisI	GCNGC	9 cut(s)	227, 257, 273, 276, 279, 621, 962, 1266, 1269
BlsI	GCNGC	9 cut(s)	228, 258, 274, 277, 280, 622, 963, 1267, 1270
Bme1390I	CCNGG	2 cut(s)	569, 659
Bme18I	GGWCC	2 cut(s)	510, 950
BmgT120I	GGNCC	3 cut(s)	510, 736, 950
BmiI	GGNNCC	3 cut(s)	663, 738, 952
BmrFI	CCNGG	2 cut(s)	569, 659
BmrI	ACTGGG	2 cut(s)	14, 1191
BmsI	GCATC	6 cut(s)	274, 686, 712, 773, 933, 970
BmuI	ACTGGG	2 cut(s)	14, 1191
BpmI	CTGGAG	1 cut(s)	680
Bpu10I	CCTNAGC	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	569
BsaI	GGTCTC	1 cut(s)	1004
BsaJI	CCNNGG	5 cut(s)	567, 589, 624, 657, 759
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 198
Bse118I	RCCGGY	3 cut(s)	175, 259, 368
Bse1I	ACTGG	3 cut(s)	20, 794, 1186
Bse3DI	GCAATG	3 cut(s)	822, 867, 906
BseBI	CCWGG	1 cut(s)	659
BseDI	CCNNGG	5 cut(s)	567, 589, 624, 657, 759
BseGI	GGATG	2 cut(s)	924, 985
BseLI	CCNNNNNNNGG	2 cut(s)	182, 198
BseMI	GCAATG	3 cut(s)	822, 867, 906
BseMII	CTCAG	5 cut(s)	59, 221, 288, 336, 701
BseNI	ACTGG	3 cut(s)	20, 794, 1186
BsePI	GCGCGC	1 cut(s)	529
BseXI	GCAGC	9 cut(s)	238, 243, 259, 265, 287, 632, 948, 1252, 1255
Bsh1236I	CGCG	1 cut(s)	531
BshFI	GGCC	2 cut(s)	140, 737
BsiSI	CCGG	6 cut(s)	155, 176, 192, 260, 369, 569
BslFI	GGGAC	1 cut(s)	703
BslI	CCNNNNNNNGG	2 cut(s)	182, 198
BsmAI	GTCTC	4 cut(s)	226, 503, 1004, 1018
BsmBI	CGTCTC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	703
BsmI	GAATGC	2 cut(s)	575, 827
BsnI	GGCC	2 cut(s)	140, 737
Bso31I	GGTCTC	1 cut(s)	1004
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp1407I	TGTACA	1 cut(s)	1050
Bsp143I	GATC	4 cut(s)	12, 363, 747, 1134
Bsp19I	CCATGG	1 cut(s)	759
BspACI	CCGC	1 cut(s)	238
BspANI	GGCC	2 cut(s)	140, 737
BspCNI	CTCAG	5 cut(s)	58, 222, 289, 337, 700
BspFNI	CGCG	1 cut(s)	531
BspLI	GGNNCC	3 cut(s)	663, 738, 952
BspMAI	CTGCAG	2 cut(s)	277, 1273
BspQI	GCTCTTC	1 cut(s)	1242
BspTNI	GGTCTC	1 cut(s)	1004
BsrDI	GCAATG	3 cut(s)	822, 867, 906
BsrFI	RCCGGY	3 cut(s)	175, 259, 368
BsrGI	TGTACA	1 cut(s)	1050
BsrI	ACTGG	3 cut(s)	20, 794, 1186
BssAI	RCCGGY	3 cut(s)	175, 259, 368
BssECI	CCNNGG	5 cut(s)	567, 589, 624, 657, 759
BssHII	GCGCGC	1 cut(s)	529
BssMI	GATC	4 cut(s)	12, 363, 747, 1134
BssT1I	CCWWGG	1 cut(s)	759
Bst2UI	CCWGG	1 cut(s)	659
Bst4CI	ACNGT	2 cut(s)	497, 878
Bst6I	CTCTTC	1 cut(s)	1242
BstAPI	GCANNNNNTGC	1 cut(s)	1277
BstAUI	TGTACA	1 cut(s)	1050
BstC8I	GCNNGC	5 cut(s)	113, 521, 531, 1062, 1101
BstDEI	CTNAG	6 cut(s)	45, 230, 267, 297, 345, 687
BstDSI	CCRYGG	2 cut(s)	624, 759
BstF5I	GGATG	2 cut(s)	924, 985
BstFNI	CGCG	1 cut(s)	531
BstHHI	GCGC	2 cut(s)	531, 533
BstKTI	GATC	4 cut(s)	15, 366, 750, 1137
BstMAI	GTCTC	4 cut(s)	226, 503, 1004, 1018
BstMBI	GATC	4 cut(s)	12, 363, 747, 1134
BstMWI	GCNNNNNNNGC	8 cut(s)	235, 272, 278, 284, 293, 626, 1214, 1277
BstNI	CCWGG	1 cut(s)	659
BstNSI	RCATGY	1 cut(s)	599
BstSCI	CCNGG	2 cut(s)	567, 657
BstSFI	CTRYAG	4 cut(s)	273, 835, 984, 1269
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	9 cut(s)	238, 243, 259, 265, 287, 632, 948, 1252, 1255
BsuRI	GGCC	2 cut(s)	140, 737
BtgI	CCRYGG	2 cut(s)	624, 759
BtgZI	GCGATG	2 cut(s)	824, 1183
BtsCI	GGATG	2 cut(s)	924, 985
BtsI	GCAGTG	1 cut(s)	811
BtsIMutI	CAGTG	1 cut(s)	811
Cac8I	GCNNGC	5 cut(s)	113, 521, 531, 1062, 1101
CaiI	CAGNNNCTG	2 cut(s)	229, 1277
CfoI	GCGC	2 cut(s)	531, 533
Cfr10I	RCCGGY	3 cut(s)	175, 259, 368
Cfr13I	GGNCC	3 cut(s)	510, 736, 950
Csp6I	GTAC	5 cut(s)	391, 493, 879, 895, 1051
CviAII	CATG	4 cut(s)	385, 596, 601, 760
CviQI	GTAC	5 cut(s)	391, 493, 879, 895, 1051
DdeI	CTNAG	6 cut(s)	45, 230, 267, 297, 345, 687
DpnI	GATC	4 cut(s)	14, 365, 749, 1136
DpnII	GATC	4 cut(s)	12, 363, 747, 1134
Eam1104I	CTCTTC	1 cut(s)	1242
EarI	CTCTTC	1 cut(s)	1242
Eco130I	CCWWGG	1 cut(s)	759
Eco24I	GRGCYC	1 cut(s)	245
Eco31I	GGTCTC	1 cut(s)	1004
Eco47I	GGWCC	2 cut(s)	510, 950
Eco57I	CTGAAG	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	950
EcoRII	CCWGG	1 cut(s)	657
EcoT14I	CCWWGG	1 cut(s)	759
EcoT22I	ATGCAT	1 cut(s)	679
EcoT38I	GRGCYC	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	759
Esp3I	CGTCTC	1 cut(s)	226
FaeI	CATG	4 cut(s)	388, 599, 604, 763
FaqI	GGGAC	1 cut(s)	703
FatI	CATG	4 cut(s)	384, 595, 600, 759
FauI	CCCGC	1 cut(s)	231
FbaI	TGATCA	2 cut(s)	12, 363
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	9 cut(s)	227, 257, 273, 276, 279, 621, 962, 1266, 1269
FokI	GGATG	2 cut(s)	911, 992
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	9 cut(s)	227, 257, 273, 276, 279, 621, 962, 1266, 1269
GlaI	GCGC	2 cut(s)	530, 532
GluI	GCNGC	9 cut(s)	227, 257, 273, 276, 279, 621, 962, 1266, 1269
GsuI	CTGGAG	1 cut(s)	680
HaeIII	GGCC	2 cut(s)	140, 737
HapII	CCGG	6 cut(s)	155, 176, 192, 260, 369, 569
HhaI	GCGC	2 cut(s)	531, 533
Hin1II	CATG	4 cut(s)	388, 599, 604, 763
Hin6I	GCGC	2 cut(s)	529, 531
HinP1I	GCGC	2 cut(s)	529, 531
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	6 cut(s)	155, 176, 192, 260, 369, 569
HphI	GGTGA	2 cut(s)	358, 823
Hpy166II	GTNNAC	2 cut(s)	433, 493
Hpy188I	TCNGA	6 cut(s)	125, 346, 363, 593, 1018, 1109
Hpy188III	TCNNGA	3 cut(s)	745, 1027, 1132
Hpy8I	GTNNAC	2 cut(s)	433, 493
HpyAV	CCTTC	4 cut(s)	96, 421, 941, 1255
HpyCH4III	ACNGT	2 cut(s)	497, 878
HpyF10VI	GCNNNNNNNGC	8 cut(s)	235, 272, 278, 284, 293, 626, 1214, 1277
HpyF3I	CTNAG	6 cut(s)	45, 230, 267, 297, 345, 687
Hsp92II	CATG	4 cut(s)	388, 599, 604, 763
HspAI	GCGC	2 cut(s)	529, 531
Ksp22I	TGATCA	2 cut(s)	12, 363
Kzo9I	GATC	4 cut(s)	12, 363, 747, 1134
LguI	GCTCTTC	1 cut(s)	1242
LmnI	GCTCC	2 cut(s)	547, 661
Lsp1109I	GCAGC	9 cut(s)	238, 243, 259, 265, 287, 632, 948, 1252, 1255
LweI	GCATC	6 cut(s)	274, 686, 712, 773, 933, 970
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	4 cut(s)	14, 365, 749, 1136
MboI	GATC	4 cut(s)	12, 363, 747, 1134
MboII	GAAGA	5 cut(s)	45, 373, 400, 661, 1259
MfeI	CAATTG	1 cut(s)	1203
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	5 cut(s)	306, 350, 436, 1007, 1203
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	3 cut(s)	56, 463, 1087
MnlI	CCTC	2 cut(s)	151, 599
Mph1103I	ATGCAT	1 cut(s)	679
MseI	TTAA	4 cut(s)	398, 651, 975, 1229
MslI	CAYNNNNRTG	1 cut(s)	1151
MspA1I	CMGCKG	2 cut(s)	229, 278
MspI	CCGG	6 cut(s)	155, 176, 192, 260, 369, 569
MspR9I	CCNGG	2 cut(s)	569, 659
MunI	CAATTG	1 cut(s)	1203
Mva1269I	GAATGC	2 cut(s)	575, 827
MvaI	CCWGG	1 cut(s)	659
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	8 cut(s)	235, 272, 278, 284, 293, 626, 1214, 1277
NciI	CCSGG	1 cut(s)	569
NcoI	CCATGG	1 cut(s)	759
NdeII	GATC	4 cut(s)	12, 363, 747, 1134
NlaIII	CATG	4 cut(s)	388, 599, 604, 763
NlaIV	GGNNCC	3 cut(s)	663, 738, 952
NmuCI	GTSAC	1 cut(s)	581
NsiI	ATGCAT	1 cut(s)	679
NspI	RCATGY	1 cut(s)	599
PauI	GCGCGC	1 cut(s)	529
PciI	ACATGT	1 cut(s)	595
PciSI	GCTCTTC	1 cut(s)	1242
PctI	GAATGC	2 cut(s)	575, 827
PkrI	GCNGC	9 cut(s)	228, 258, 274, 277, 280, 622, 963, 1267, 1270
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PpuMI	RGGWCCY	1 cut(s)	950
PscI	ACATGT	1 cut(s)	595
Psp5II	RGGWCCY	1 cut(s)	950
Psp6I	CCWGG	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	657
PspN4I	GGNNCC	3 cut(s)	663, 738, 952
PspPI	GGNCC	3 cut(s)	510, 736, 950
PspPPI	RGGWCCY	1 cut(s)	950
PstI	CTGCAG	2 cut(s)	277, 1273
PstNI	CAGNNNCTG	2 cut(s)	229, 1277
PteI	GCGCGC	1 cut(s)	529
PvuII	CAGCTG	2 cut(s)	229, 278
RsaI	GTAC	5 cut(s)	392, 494, 880, 896, 1052
RsaNI	GTAC	5 cut(s)	391, 493, 879, 895, 1051
RseI	CAYNNNNRTG	1 cut(s)	1151
SapI	GCTCTTC	1 cut(s)	1242
SaqAI	TTAA	4 cut(s)	398, 651, 975, 1229
SatI	GCNGC	9 cut(s)	227, 257, 273, 276, 279, 621, 962, 1266, 1269
Sau3AI	GATC	4 cut(s)	12, 363, 747, 1134
Sau96I	GGNCC	3 cut(s)	510, 736, 950
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	2 cut(s)	569, 659
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	8 cut(s)	130, 231, 280, 341, 432, 836, 1000, 1062
SfaNI	GCATC	6 cut(s)	274, 686, 712, 773, 933, 970
SfcI	CTRYAG	4 cut(s)	273, 835, 984, 1269
SinI	GGWCC	2 cut(s)	510, 950
SmiMI	CAYNNNNRTG	1 cut(s)	1151
Sse9I	AATT	5 cut(s)	306, 350, 436, 1007, 1203
SsiI	CCGC	1 cut(s)	238
StyD4I	CCNGG	2 cut(s)	567, 657
StyI	CCWWGG	1 cut(s)	759
TaaI	ACNGT	2 cut(s)	497, 878
TasI	AATT	5 cut(s)	306, 350, 436, 1007, 1203
TatI	WGTACW	3 cut(s)	492, 878, 1050
Tru1I	TTAA	4 cut(s)	398, 651, 975, 1229
Tru9I	TTAA	4 cut(s)	398, 651, 975, 1229
TscAI	CASTG	1 cut(s)	811
TseFI	GTSAC	1 cut(s)	581
TseI	GCWGC	9 cut(s)	226, 256, 272, 275, 278, 620, 961, 1265, 1268
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	2 cut(s)	14, 373
TspGWI	ACGGA	3 cut(s)	138, 502, 1273
TspRI	CASTG	1 cut(s)	811
VpaK11BI	GGWCC	2 cut(s)	510, 950
XapI	RAATTY	2 cut(s)	350, 1007
XceI	RCATGY	1 cut(s)	599
XmiI	GTMKAC	1 cut(s)	432
Zsp2I	ATGCAT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.