Prupe.4G052800_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
2546461 .. 2548830
2370 bp
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UTR
Exon/CDS
Intron
Prupe.4G052800.2

Sequence Viewer

Length: 1440 bp
ATGGGAAGCAAAACTTTGTTTAAATGGTCGAAGCAAATCACTACTTCCCAAGTTGAGCAGCTGATAAAAGCTGAAAAGGACATACAGAAAGCTATTCTCATATTTGATTCCGCAACAGCCGAGTACACCAATGGCTTCCGGCATGATCACACCACCTTTGGTCTCATGGTCGCTAGATTAGTCTCCGCGAACCAGTTCAGGTCAGCCGAGGCGTTACTTGATAAGATGAAGGAGGAGAAATGTAGTGTTACAGAAGATATATTCCTCTCTGTTTGCAGAGGATATGGCCGCGTTCACAGGCCACTGGATGCTGTCAGGGTCTTCCACAAAATGGAGGACTTCCAGTGCAAACCAACCCAGAAATCTTACATTACCATACTTGGCATTCTTGTTGAAGAAAACCAGTTAAAGATTGCTTTCAGGTTCTACAAGTATATGAGAGAAACGGGCATTCCAGCTAGCGTTGTGTCGCTTAATATTTTGATCAAAGCCCTTTGTAAGAACAGTAGTTCCATGGATGCAGCTCTTCGAATATTTTGTGAGATGCCCAATCATGGGTGCACCCCAGATTCATATACATATGGTACTTTGATTAATGGATTGTGTAAGTTAGGAAAGATTGGTGAAGCAAAAGAGCTCTTCAATGAAATGGAAACAAAAGGTTGTTTGCCCTCTGTTGTTACGTATACTTCCTTGATACACGGCTTTTGCCAATCCAACAATTTGGATGAAGCTGTGGGATTGTTTGAACACATGAAAACCAAAGGTATTACTCCAAATGTCTTTACTTACAGCTCTTTGATGGATGGACTTTGCAAGGGTGGGCGTTCTTCACAAGCAATGGAACTATTAGACTTAATGATTCGTAAGCGCCATAGGCCAAACAATATCACTTATAGTACTTTGCTTCATGGACTCTGTGAAGAAGGAAAGCTTCAAGAAGCTTTGGAGATTCTAGACAGGATGAAGCTTCAGGGCTTGAAACCAGATGCAGGGCTGTATGGGAAGGTAATTAATGGCTTTTGTAACATTTGCAAGTTCCAGGAAGCTGCAAACTTTCTTGATGAGATGGTCCTTGGAGGAGTTTCACCTAACAGACTAACTTGGAGCCTTCATGTAAGGATTCATAATGCAGTCGTCCAGGGCTTGTGTAGTAGCGGCAATCCAAATCGAGCTTGTCAGCTGTATCTTAGCATGCGTTCCAGGGGTATCTCCATTGATATGAAGACATTTGATACTCTAGTGAGGTGTATCTGTAAAAAAGGGGACCTGCACAAAGCTTATCGAATTGTTGATGAGATGGTGCTTGATGGATGTGTTCCGGATGAGGGAATATGGAGTTCCATGGTGGATGGGTTTTGGAATCGCAGGAAGGTGCGTGAACCTGCTGAGTTGTTGCAGGCTGAGCTGATGAGTGAAATGGTTGAGCCTGAAACATAA

Protein Analysis

480

Amino Acids

53.93

Weight (kDa)

8.19

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1278, 1393
AccB7I CCANNNNNTGG 1 cut(s) 331
AccI GTMKAC 1 cut(s) 686
AccII CGCG 2 cut(s) 188, 291
AccIII TCCGGA 1 cut(s) 1321
AciI CCGC 4 cut(s) 111, 186, 289, 1158
AcoI YGGCCR 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 956
AfaI GTAC 3 cut(s) 125, 586, 901
AfiI CCNNNNNNNGG 5 cut(s) 331, 554, 555, 992, 1328
AgsI TTSAA 5 cut(s) 395, 643, 749, 938, 982
AjnI CCWGG 3 cut(s) 1041, 1140, 1202
AloI GAACNNNNNNTCC 2 cut(s) 494, 526
Alw21I GWGCWC 2 cut(s) 563, 639
Alw26I GTCTC 2 cut(s) 167, 187
Alw44I GTGCAC 1 cut(s) 559
Aor13HI TCCGGA 1 cut(s) 1321
AoxI GGCC 3 cut(s) 286, 299, 878
ApaLI GTGCAC 1 cut(s) 559
ApeKI GCWGC 3 cut(s) 58, 521, 1049
AseI ATTAAT 2 cut(s) 594, 1014
Asp700I GAANNNNTTC 1 cut(s) 194
AspLEI GCGC 1 cut(s) 873
AspS9I GGNCC 2 cut(s) 1072, 1267
AsuHPI GGTGA 2 cut(s) 635, 1080
AsuII TTCGAA 1 cut(s) 529
AsuNHI GCTAGC 1 cut(s) 458
AvaII GGWCC 2 cut(s) 1072, 1267
BaeGI GKGCMC 1 cut(s) 563
BaeI ACNNNNGTAYC 2 cut(s) 1227, 1260
BanII GRGCYC 1 cut(s) 639
BbsI GAAGAC 2 cut(s) 313, 1232
Bbv12I GWGCWC 2 cut(s) 563, 639
BbvI GCAGC 3 cut(s) 70, 533, 1036
BccI CCATC 6 cut(s) 796, 800, 1063, 1294, 1304, 1346
BceAI ACGGC 1 cut(s) 718
BciT130I CCWGG 3 cut(s) 1043, 1142, 1204
BclI TGATCA 2 cut(s) 145, 483
BcoDI GTCTC 2 cut(s) 167, 187
BfaI CTAG 4 cut(s) 174, 459, 956, 1241
BfoI RGCGCY 1 cut(s) 874
BfuAI ACCTGC 2 cut(s) 1278, 1393
BisI GCNGC 5 cut(s) 59, 289, 522, 1050, 1159
BlpI GCTNAGC 1 cut(s) 1404
BlsI GCNGC 5 cut(s) 60, 290, 523, 1051, 1160
BmcAI AGTACT 1 cut(s) 901
Bme1390I CCNGG 3 cut(s) 1043, 1142, 1204
Bme18I GGWCC 2 cut(s) 1072, 1267
BmgT120I GGNCC 2 cut(s) 1072, 1267
BmiI GGNNCC 2 cut(s) 1109, 1268
BmrFI CCNGG 3 cut(s) 1043, 1142, 1204
BmsI GCATC 4 cut(s) 298, 508, 534, 979
BmtI GCTAGC 1 cut(s) 462
BpiI GAAGAC 2 cut(s) 313, 1232
Bpu1102I GCTNAGC 1 cut(s) 1404
Bpu14I TTCGAA 1 cut(s) 529
BsaAI YACGTR 1 cut(s) 684
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 6 cut(s) 207, 513, 1075, 1141, 1203, 1344
BsaWI WCCGGW 1 cut(s) 1321
Bsc4I CCNNNNNNNGG 5 cut(s) 331, 554, 555, 992, 1328
Bse1I ACTGG 4 cut(s) 193, 309, 343, 403
Bse3DI GCAATG 1 cut(s) 846
BseAI TCCGGA 1 cut(s) 1321
BseBI CCWGG 3 cut(s) 1043, 1142, 1204
BseDI CCNNGG 6 cut(s) 207, 513, 1075, 1141, 1203, 1344
BseGI GGATG 8 cut(s) 313, 523, 733, 811, 969, 1319, 1330, 1357
BseLI CCNNNNNNNGG 5 cut(s) 331, 554, 555, 992, 1328
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 2 cut(s) 1380, 1395
BseNI ACTGG 4 cut(s) 193, 309, 343, 403
BseRI GAGGAG 2 cut(s) 248, 1095
BseSI GKGCMC 1 cut(s) 563
BseXI GCAGC 3 cut(s) 70, 533, 1036
BsgI GTGCAG 1 cut(s) 1256
Bsh1236I CGCG 2 cut(s) 188, 291
BshFI GGCC 3 cut(s) 288, 301, 880
BsiHKAI GWGCWC 2 cut(s) 563, 639
BsiSI CCGG 2 cut(s) 139, 1322
BslFI GGGAC 1 cut(s) 1280
BslI CCNNNNNNNGG 5 cut(s) 331, 554, 555, 992, 1328
BsmAI GTCTC 2 cut(s) 167, 187
BsmFI GGGAC 1 cut(s) 1280
BsmI GAATGC 2 cut(s) 384, 450
BsnI GGCC 3 cut(s) 288, 301, 880
Bso31I GGTCTC 1 cut(s) 167
Bsp119I TTCGAA 1 cut(s) 529
Bsp1286I GDGCHC 2 cut(s) 563, 639
Bsp13I TCCGGA 1 cut(s) 1321
Bsp143I GATC 2 cut(s) 145, 483
Bsp1720I GCTNAGC 1 cut(s) 1404
Bsp19I CCATGG 2 cut(s) 513, 1344
BspACI CCGC 4 cut(s) 111, 186, 289, 1158
BspANI GGCC 3 cut(s) 288, 301, 880
BspCNI CTCAG 2 cut(s) 1381, 1396
BspEI TCCGGA 1 cut(s) 1321
BspFNI CGCG 2 cut(s) 188, 291
BspLI GGNNCC 2 cut(s) 1109, 1268
BspMI ACCTGC 2 cut(s) 1278, 1393
BspOI GCTAGC 1 cut(s) 462
BspQI GCTCTTC 2 cut(s) 531, 644
BspT104I TTCGAA 1 cut(s) 529
BspTNI GGTCTC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 846
BsrI ACTGG 4 cut(s) 193, 309, 343, 403
BssECI CCNNGG 6 cut(s) 207, 513, 1075, 1141, 1203, 1344
BssMI GATC 2 cut(s) 145, 483
BssNAI GTATAC 1 cut(s) 687
BssT1I CCWWGG 3 cut(s) 513, 1075, 1344
Bst1107I GTATAC 1 cut(s) 687
Bst2UI CCWGG 3 cut(s) 1043, 1142, 1204
Bst4CI ACNGT 1 cut(s) 506
Bst6I CTCTTC 2 cut(s) 531, 644
BstBAI YACGTR 1 cut(s) 684
BstBI TTCGAA 1 cut(s) 529
BstC8I GCNNGC 3 cut(s) 460, 1196, 1401
BstDEI CTNAG 3 cut(s) 1190, 1389, 1404
BstDSI CCRYGG 2 cut(s) 513, 1344
BstF5I GGATG 8 cut(s) 313, 523, 733, 811, 969, 1319, 1330, 1357
BstFNI CGCG 2 cut(s) 188, 291
BstH2I RGCGCY 1 cut(s) 874
BstHHI GCGC 1 cut(s) 873
BstKTI GATC 2 cut(s) 148, 486
BstMAI GTCTC 2 cut(s) 167, 187
BstMBI GATC 2 cut(s) 145, 483
BstMWI GCNNNNNNNGC 2 cut(s) 877, 1405
BstNI CCWGG 3 cut(s) 1043, 1142, 1204
BstNSI RCATGY 1 cut(s) 1198
BstSCI CCNGG 3 cut(s) 1041, 1140, 1202
BstSLI GKGCMC 1 cut(s) 563
BstSNI TACGTA 1 cut(s) 684
BstUI CGCG 2 cut(s) 188, 291
BstV1I GCAGC 3 cut(s) 70, 533, 1036
BstV2I GAAGAC 2 cut(s) 313, 1232
BstXI CCANNNNNNTGG 1 cut(s) 724
BstZ17I GTATAC 1 cut(s) 687
BsuRI GGCC 3 cut(s) 288, 301, 880
BtgI CCRYGG 2 cut(s) 513, 1344
BtsCI GGATG 8 cut(s) 313, 523, 733, 811, 969, 1319, 1330, 1357
BtsIMutI CAGTG 2 cut(s) 302, 350
BveI ACCTGC 2 cut(s) 1278, 1393
Cac8I GCNNGC 3 cut(s) 460, 1196, 1401
CfoI GCGC 1 cut(s) 873
Cfr13I GGNCC 2 cut(s) 1072, 1267
Csp6I GTAC 3 cut(s) 124, 585, 900
CviAII CATG 9 cut(s) 143, 166, 514, 554, 754, 911, 1115, 1195, 1345
CviQI GTAC 3 cut(s) 124, 585, 900
DdeI CTNAG 3 cut(s) 1190, 1389, 1404
DpnI GATC 2 cut(s) 147, 485
DpnII GATC 2 cut(s) 145, 483
DraI TTTAAA 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 286
Eam1104I CTCTTC 2 cut(s) 531, 644
EarI CTCTTC 2 cut(s) 531, 644
Ecl136II GAGCTC 1 cut(s) 637
Eco105I TACGTA 1 cut(s) 684
Eco130I CCWWGG 3 cut(s) 513, 1075, 1344
Eco24I GRGCYC 1 cut(s) 639
Eco31I GGTCTC 1 cut(s) 167
Eco47I GGWCC 2 cut(s) 1072, 1267
Eco53kI GAGCTC 1 cut(s) 637
Eco57I CTGAAG 1 cut(s) 956
EcoICRI GAGCTC 1 cut(s) 637
EcoO109I RGGNCCY 1 cut(s) 1267
EcoRII CCWGG 3 cut(s) 1041, 1140, 1202
EcoT14I CCWWGG 3 cut(s) 513, 1075, 1344
EcoT38I GRGCYC 1 cut(s) 639
ErhI CCWWGG 3 cut(s) 513, 1075, 1344
FaeI CATG 9 cut(s) 146, 169, 517, 557, 757, 914, 1118, 1198, 1348
FalI AAGNNNNNCTT 3 cut(s) 30, 918, 950
FaqI GGGAC 1 cut(s) 1280
FatI CATG 9 cut(s) 142, 165, 513, 553, 753, 910, 1114, 1194, 1344
FauNDI CATATG 1 cut(s) 580
FbaI TGATCA 2 cut(s) 145, 483
FblI GTMKAC 1 cut(s) 686
Fnu4HI GCNGC 5 cut(s) 59, 289, 522, 1050, 1159
FokI GGATG 8 cut(s) 320, 530, 740, 818, 976, 1326, 1337, 1364
FriOI GRGCYC 1 cut(s) 639
Fsp4HI GCNGC 5 cut(s) 59, 289, 522, 1050, 1159
FspBI CTAG 4 cut(s) 174, 459, 956, 1241
GlaI GCGC 1 cut(s) 872
GluI GCNGC 5 cut(s) 59, 289, 522, 1050, 1159
HaeII RGCGCY 1 cut(s) 874
HaeIII GGCC 3 cut(s) 288, 301, 880
HapII CCGG 2 cut(s) 139, 1322
HhaI GCGC 1 cut(s) 873
Hin1II CATG 9 cut(s) 146, 169, 517, 557, 757, 914, 1118, 1198, 1348
Hin6I GCGC 1 cut(s) 871
HinP1I GCGC 1 cut(s) 871
HindIII AAGCTT 4 cut(s) 932, 942, 968, 1278
HinfI GANTC 7 cut(s) 107, 569, 862, 915, 952, 1123, 1363
HpaII CCGG 2 cut(s) 139, 1322
HphI GGTGA 2 cut(s) 635, 1080
Hpy166II GTNNAC 5 cut(s) 126, 295, 561, 687, 1382
Hpy188III TCNNGA 4 cut(s) 938, 956, 1061, 1322
Hpy8I GTNNAC 5 cut(s) 126, 295, 561, 687, 1382
HpyAV CCTTC 5 cut(s) 223, 920, 1000, 1121, 1366
HpyCH4III ACNGT 1 cut(s) 506
HpyCH4IV ACGT 1 cut(s) 683
HpyF10VI GCNNNNNNNGC 2 cut(s) 877, 1405
HpyF3I CTNAG 3 cut(s) 1190, 1389, 1404
HpySE526I ACGT 1 cut(s) 683
Hsp92II CATG 9 cut(s) 146, 169, 517, 557, 757, 914, 1118, 1198, 1348
HspAI GCGC 1 cut(s) 871
Kpn2I TCCGGA 1 cut(s) 1321
Ksp22I TGATCA 2 cut(s) 145, 483
Kzo9I GATC 2 cut(s) 145, 483
LguI GCTCTTC 2 cut(s) 531, 644
LmnI GCTCC 1 cut(s) 1107
Lsp1109I GCAGC 3 cut(s) 70, 533, 1036
LweI GCATC 4 cut(s) 298, 508, 534, 979
MaeI CTAG 4 cut(s) 174, 459, 956, 1241
MaeII ACGT 1 cut(s) 683
MaeIII GTNAC 4 cut(s) 213, 247, 679, 1025
MalI GATC 2 cut(s) 147, 485
MboI GATC 2 cut(s) 145, 483
MboII GAAGA 8 cut(s) 266, 313, 407, 518, 631, 822, 935, 1237
MhlI GDGCHC 2 cut(s) 563, 639
MluCI AATT 3 cut(s) 721, 1011, 1287
MlyI GAGTC 1 cut(s) 909
MmeI TCCRAC 1 cut(s) 741
MnlI CCTC 9 cut(s) 202, 226, 272, 275, 328, 682, 1073, 1239, 1321
MroI TCCGGA 1 cut(s) 1321
MroXI GAANNNNTTC 1 cut(s) 194
MseI TTAA 6 cut(s) 21, 407, 474, 594, 857, 1014
MslI CAYNNNNRTG 1 cut(s) 1220
MspA1I CMGCKG 2 cut(s) 61, 1183
MspI CCGG 2 cut(s) 139, 1322
MspR9I CCNGG 3 cut(s) 1043, 1142, 1204
Mva1269I GAATGC 2 cut(s) 384, 450
MvaI CCWGG 3 cut(s) 1043, 1142, 1204
MvnI CGCG 2 cut(s) 188, 291
MwoI GCNNNNNNNGC 2 cut(s) 877, 1405
NcoI CCATGG 2 cut(s) 513, 1344
NdeI CATATG 1 cut(s) 580
NdeII GATC 2 cut(s) 145, 483
NheI GCTAGC 1 cut(s) 458
NlaIII CATG 9 cut(s) 146, 169, 517, 557, 757, 914, 1118, 1198, 1348
NlaIV GGNNCC 2 cut(s) 1109, 1268
NmeAIII GCCGAG 2 cut(s) 145, 232
NspI RCATGY 1 cut(s) 1198
NspV TTCGAA 1 cut(s) 529
PaeI GCATGC 1 cut(s) 1198
PciSI GCTCTTC 2 cut(s) 531, 644
PctI GAATGC 2 cut(s) 384, 450
PdmI GAANNNNTTC 1 cut(s) 194
PfeI GAWTC 6 cut(s) 107, 569, 862, 952, 1123, 1363
PflMI CCANNNNNTGG 1 cut(s) 331
PfoI TCCNGGA 1 cut(s) 1041
PkrI GCNGC 5 cut(s) 60, 290, 523, 1051, 1160
PleI GAGTC 1 cut(s) 909
PpsI GAGTC 1 cut(s) 909
Ppu21I YACGTR 1 cut(s) 684
PpuMI RGGWCCY 1 cut(s) 1267
PshBI ATTAAT 2 cut(s) 594, 1014
Psp124BI GAGCTC 1 cut(s) 639
Psp5II RGGWCCY 1 cut(s) 1267
Psp6I CCWGG 3 cut(s) 1041, 1140, 1202
PspGI CCWGG 3 cut(s) 1041, 1140, 1202
PspN4I GGNNCC 2 cut(s) 1109, 1268
PspPI GGNCC 2 cut(s) 1072, 1267
PspPPI RGGWCCY 1 cut(s) 1267
PvuII CAGCTG 2 cut(s) 61, 1183
RsaI GTAC 3 cut(s) 125, 586, 901
RsaNI GTAC 3 cut(s) 124, 585, 900
RseI CAYNNNNRTG 1 cut(s) 1220
SacI GAGCTC 1 cut(s) 639
SapI GCTCTTC 2 cut(s) 531, 644
SaqAI TTAA 6 cut(s) 21, 407, 474, 594, 857, 1014
SatI GCNGC 5 cut(s) 59, 289, 522, 1050, 1159
Sau3AI GATC 2 cut(s) 145, 483
Sau96I GGNCC 2 cut(s) 1072, 1267
ScaI AGTACT 1 cut(s) 901
SchI GAGTC 1 cut(s) 909
ScrFI CCNGG 3 cut(s) 1043, 1142, 1204
SduI GDGCHC 2 cut(s) 563, 639
SfaNI GCATC 4 cut(s) 298, 508, 534, 979
SfuI TTCGAA 1 cut(s) 529
SinI GGWCC 2 cut(s) 1072, 1267
SmiMI CAYNNNNRTG 1 cut(s) 1220
SnaBI TACGTA 1 cut(s) 684
SphI GCATGC 1 cut(s) 1198
Sse9I AATT 3 cut(s) 721, 1011, 1287
SsiI CCGC 4 cut(s) 111, 186, 289, 1158
SspI AATATT 2 cut(s) 478, 534
SspMI CTAG 4 cut(s) 174, 459, 956, 1241
SstI GAGCTC 1 cut(s) 639
StyD4I CCNGG 3 cut(s) 1041, 1140, 1202
StyI CCWWGG 3 cut(s) 513, 1075, 1344
TaaI ACNGT 1 cut(s) 506
TaiI ACGT 1 cut(s) 686
TaqI TCGA 4 cut(s) 29, 529, 1171, 1285
TasI AATT 3 cut(s) 721, 1011, 1287
TatI WGTACW 2 cut(s) 123, 899
TauI GCSGC 2 cut(s) 291, 1161
TfiI GAWTC 6 cut(s) 107, 569, 862, 952, 1123, 1363
Tru1I TTAA 6 cut(s) 21, 407, 474, 594, 857, 1014
Tru9I TTAA 6 cut(s) 21, 407, 474, 594, 857, 1014
TscAI CASTG 2 cut(s) 309, 350
TseI GCWGC 3 cut(s) 58, 521, 1049
TspRI CASTG 2 cut(s) 309, 350
Van91I CCANNNNNTGG 1 cut(s) 331
VneI GTGCAC 1 cut(s) 559
VpaK11BI GGWCC 2 cut(s) 1072, 1267
VspI ATTAAT 2 cut(s) 594, 1014
XbaI TCTAGA 1 cut(s) 955
XceI RCATGY 1 cut(s) 1198
XmiI GTMKAC 1 cut(s) 686
XmnI GAANNNNTTC 1 cut(s) 194
XspI CTAG 4 cut(s) 174, 459, 956, 1241
ZrmI AGTACT 1 cut(s) 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.