AT5G48440

FAD dependent oxidoreductase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
19629658 .. 19632775
3118 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48440.1

Sequence Viewer

Length: 1380 bp
ATGGTTTCCATTTTCCTTCAATCACCCACCTTTTTAACACCACTGAGCTACCCATTTTCATCTCGGAGCTCCACCAAGAGAACCCAACATGGAGCTTCTCTGTCACTACGTGTCACAGCTTCTCGTAGCTCCTTCGATGTTGTTGTTGTAGGTGGTGGGATCATTGGGTTAACCATAGCCCGCCAATTCCTTACCGGGTCGGATCTATCTGTTGCTGTTGTCGATAAAGCCGTACCTTGCTCCGGCGCCACCGGTGCCGGGCAGGGATATATATGGATGACACACAAGAAACCAGGCAGTGATGTGTGGGACTTGACCTTGAGGAGCCATGAACTCTGGCACAAGCTTGCAGAGAGCTTGACTGATGATGGTCTTGATCCTGAAGAGTTGCTTGGCTGGAAAAAGACAGGAAGCTTGCTCATTGGTAGGACCACTGAGGAATGTGTTGCTCTGAAGCAAAAGGTTCATGAGCTATCTGAAGCTGGGTTAAGAACTGAATATTTGTCTAGTGCTGAGTTGTTGTTAAAGGAGCCTGCGATACTTGTAAATGATAATACTGGTGCTGCATTTCTTCCTGATGATTCACAGTTGGACGCCCATCGTGCGGTTGCTTATATCGAGAAGGGTAATAGAGCGTTTGCAACAGCAGGCAGATATGCCGAGTTCTATAATGAACCAGTTACAGGTTTAATAAGGTCTGATGGGGATAGCAAGGTGGTTGCTGGCGTTAAGACTTTGAAACGCAACTTGTATGGTAAGAAGGCTACTATAGTAGCTGCTGGTTGCTGGAGTGGATCTCTGATGCATGAATTGCTTAAAGACTGCAACATTCCGCTGGACGTTCCGGTGAAGCCAAGAAAGGGGCATCTGCTTGTGGTAGAGAACTTTGATTCATTCCACTTAAATCATGGGATAATGGAGGCTGGTTACTCGAATCATCAAAGTGCTTCAGTTTCAGGATTGGATGTCGATGAACGGATGCTATCTATTTCCATGACAGCCACAATGGACACATCAGGAAACCTTGTTCTTGGGAGCAGCCGTGAGTTTGTCGGGTTCGACACTGAAGCTGATGAGTTTATCATCCGTTGCATATGGGAGCGTGCTGCAGAATTCTTTCCTAAGTTACGTGATATTTCCCTCGAAGATTTCATCCGTAACAGGAAAGTGAGAGTCGGGTTGCGCCCTTACATGCCTGACGGGAAGCCAGTGATAGGATCCGTGCCCGGATTACAAAACATGTACTTAGCAGCTGGGCATGAAGGAGGTGGACTTTCCATGGCTCTAGCAACAGCGGAAATGGTAACGGACATGGTACTAGGAAAACCATCACAAGTGGATACTTCAACGTTTGGGGTTAAAGGGCGTCGTTGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

459

Amino Acids

49.8

Weight (kDa)

6.33

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 46 - 438 1e-58 FAD dependent oxidoreductase
FAD_binding_2 PF00890 46 - 103 7.4e-06 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 245, 254
AciI CCGC 4 cut(s) 181, 605, 833, 1295
AclI AACGTT 1 cut(s) 1349
AclWI GGATC 6 cut(s) 167, 210, 371, 802, 1212, 1225
AcsI RAATTY 1 cut(s) 1112
AcuI CTGAAG 5 cut(s) 402, 473, 498, 933, 1086
AcyI GRCGYC 3 cut(s) 246, 594, 1366
AdeI CACNNNGTG 1 cut(s) 110
AfaI GTAC 3 cut(s) 234, 1244, 1317
AfiI CCNNNNNNNGG 6 cut(s) 242, 258, 604, 683, 860, 1214
AflIII ACRYGT 2 cut(s) 109, 1239
AgeI ACCGGT 1 cut(s) 251
AgsI TTSAA 3 cut(s) 20, 739, 1347
AjnI CCWGG 1 cut(s) 292
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AloI GAACNNNNNNTCC 2 cut(s) 1011, 1043
Alw21I GWGCWC 1 cut(s) 71
AlwI GGATC 6 cut(s) 167, 210, 371, 802, 1212, 1225
ApeKI GCWGC 5 cut(s) 563, 776, 1038, 1106, 1250
ApoI RAATTY 1 cut(s) 1112
AsiGI ACCGGT 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 1116
AspLEI GCGC 2 cut(s) 248, 1185
AspS9I GGNCC 1 cut(s) 429
AsuC2I CCSGG 3 cut(s) 196, 259, 1227
AsuHPI GGTGA 2 cut(s) 15, 859
AvaII GGWCC 1 cut(s) 429
BaeGI GKGCMC 1 cut(s) 1227
BamHI GGATCC 1 cut(s) 1217
BanI GGYRCC 2 cut(s) 245, 254
BanII GRGCYC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 5 cut(s) 550, 763, 1050, 1093, 1262
BccI CCATC 4 cut(s) 362, 606, 695, 1336
BceAI ACGGC 2 cut(s) 215, 1026
BciT130I CCWGG 1 cut(s) 294
BciVI GTATCC 1 cut(s) 1333
BcnI CCSGG 3 cut(s) 196, 259, 1227
BfaI CTAG 3 cut(s) 507, 1286, 1319
BfmI CTRYAG 2 cut(s) 768, 1107
BfoI RGCGCY 1 cut(s) 249
BfuI GTATCC 1 cut(s) 1333
BisI GCNGC 5 cut(s) 564, 777, 1039, 1107, 1251
BlsI GCNGC 5 cut(s) 565, 778, 1040, 1108, 1252
Bme1390I CCNGG 4 cut(s) 196, 259, 294, 1227
Bme18I GGWCC 1 cut(s) 429
BmgT120I GGNCC 1 cut(s) 429
BmiI GGNNCC 5 cut(s) 247, 256, 326, 531, 1219
BmrFI CCNGG 4 cut(s) 196, 259, 294, 1227
BmsI GCATC 3 cut(s) 792, 874, 969
BplI GAGNNNNNCTC 2 cut(s) 781, 813
BpmI CTGGAG 1 cut(s) 808
BpuEI CTTGAG 1 cut(s) 340
BpuMI CCSGG 3 cut(s) 196, 259, 1227
BsaAI YACGTR 2 cut(s) 110, 1130
BsaHI GRCGYC 3 cut(s) 246, 594, 1366
BsaJI CCNNGG 1 cut(s) 1278
BsaWI WCCGGW 2 cut(s) 251, 844
BsaXI ACNNNNNCTCC 2 cut(s) 1027, 1057
Bsc4I CCNNNNNNNGG 6 cut(s) 242, 258, 604, 683, 860, 1214
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 3 cut(s) 562, 677, 1208
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 1278
BseGI GGATG 5 cut(s) 282, 970, 984, 1083, 1152
BseLI CCNNNNNNNGG 6 cut(s) 242, 258, 604, 683, 860, 1214
BseMII CTCAG 3 cut(s) 35, 426, 504
BseNI ACTGG 3 cut(s) 562, 677, 1208
BseRI GAGGAG 1 cut(s) 337
BseSI GKGCMC 1 cut(s) 1227
BseXI GCAGC 5 cut(s) 550, 763, 1050, 1093, 1262
BseYI CCCAGC 2 cut(s) 482, 1253
BshNI GGYRCC 2 cut(s) 245, 254
BshTI ACCGGT 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 71
BsiSI CCGG 6 cut(s) 195, 243, 252, 258, 845, 1227
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 6 cut(s) 242, 258, 604, 683, 860, 1214
BsmFI GGGAC 1 cut(s) 323
Bsp1286I GDGCHC 2 cut(s) 71, 1227
Bsp143I GATC 5 cut(s) 159, 202, 376, 794, 1217
Bsp19I CCATGG 1 cut(s) 1278
BspACI CCGC 4 cut(s) 181, 605, 833, 1295
BspCNI CTCAG 3 cut(s) 36, 427, 505
BspHI TCATGA 1 cut(s) 466
BspLI GGNNCC 5 cut(s) 247, 256, 326, 531, 1219
BspMAI CTGCAG 1 cut(s) 1111
BspPI GGATC 6 cut(s) 167, 210, 371, 802, 1212, 1225
BspT107I GGYRCC 2 cut(s) 245, 254
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 3 cut(s) 562, 677, 1208
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 1278
BssMI GATC 5 cut(s) 159, 202, 376, 794, 1217
BssNI GRCGYC 3 cut(s) 246, 594, 1366
BssT1I CCWWGG 1 cut(s) 1278
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 588
Bst6I CTCTTC 1 cut(s) 378
BstACI GRCGYC 3 cut(s) 246, 594, 1366
BstAPI GCANNNNNTGC 1 cut(s) 811
BstBAI YACGTR 2 cut(s) 110, 1130
BstC8I GCNNGC 7 cut(s) 181, 348, 416, 534, 649, 724, 1104
BstDEI CTNAG 5 cut(s) 44, 435, 513, 1122, 1246
BstDSI CCRYGG 1 cut(s) 1278
BstF5I GGATG 5 cut(s) 282, 970, 984, 1083, 1152
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 2 cut(s) 248, 1185
BstKTI GATC 5 cut(s) 162, 205, 379, 797, 1220
BstMBI GATC 5 cut(s) 159, 202, 376, 794, 1217
BstMWI GCNNNNNNNGC 3 cut(s) 254, 602, 811
BstNI CCWGG 1 cut(s) 294
BstNSI RCATGY 2 cut(s) 1195, 1243
BstSCI CCNGG 4 cut(s) 194, 257, 292, 1225
BstSFI CTRYAG 2 cut(s) 768, 1107
BstSLI GKGCMC 1 cut(s) 1227
BstV1I GCAGC 5 cut(s) 550, 763, 1050, 1093, 1262
BstX2I RGATCY 3 cut(s) 202, 794, 1217
BstYI RGATCY 3 cut(s) 202, 794, 1217
BsuI GTATCC 1 cut(s) 1333
BtgI CCRYGG 1 cut(s) 1278
BtsCI GGATG 5 cut(s) 282, 970, 984, 1083, 1152
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 5 cut(s) 41, 304, 432, 1062, 1215
Cac8I GCNNGC 7 cut(s) 181, 348, 416, 534, 649, 724, 1104
CciI TCATGA 1 cut(s) 466
CfoI GCGC 2 cut(s) 248, 1185
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 429
CseI GACGC 2 cut(s) 602, 1355
Csp6I GTAC 3 cut(s) 233, 1243, 1316
CspAI ACCGGT 1 cut(s) 251
CviQI GTAC 3 cut(s) 233, 1243, 1316
DdeI CTNAG 5 cut(s) 44, 435, 513, 1122, 1246
DinI GGCGCC 1 cut(s) 247
DpnI GATC 5 cut(s) 161, 204, 378, 796, 1219
DpnII GATC 5 cut(s) 159, 202, 376, 794, 1217
DraIII CACNNNGTG 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Ecl136II GAGCTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 1278
Eco24I GRGCYC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 429
Eco53kI GAGCTC 1 cut(s) 69
Eco57I CTGAAG 5 cut(s) 402, 473, 498, 933, 1086
EcoICRI GAGCTC 1 cut(s) 69
EcoRI GAATTC 1 cut(s) 1112
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 1278
EcoT22I ATGCAT 1 cut(s) 807
EcoT38I GRGCYC 1 cut(s) 71
EgeI GGCGCC 1 cut(s) 247
EheI GGCGCC 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 1278
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 1 cut(s) 323
FauI CCCGC 1 cut(s) 188
FauNDI CATATG 1 cut(s) 1094
Fnu4HI GCNGC 5 cut(s) 564, 777, 1039, 1107, 1251
FokI GGATG 5 cut(s) 289, 977, 991, 1070, 1139
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 5 cut(s) 564, 777, 1039, 1107, 1251
FspBI CTAG 3 cut(s) 507, 1286, 1319
GlaI GCGC 2 cut(s) 247, 1184
GluI GCNGC 5 cut(s) 564, 777, 1039, 1107, 1251
GsaI CCCAGC 2 cut(s) 486, 1257
GsuI CTGGAG 1 cut(s) 808
HaeII RGCGCY 1 cut(s) 249
HapII CCGG 6 cut(s) 195, 243, 252, 258, 845, 1227
HgaI GACGC 2 cut(s) 602, 1355
HhaI GCGC 2 cut(s) 248, 1185
Hin1I GRCGYC 3 cut(s) 246, 594, 1366
Hin6I GCGC 2 cut(s) 246, 1183
HinP1I GCGC 2 cut(s) 246, 1183
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HindIII AAGCTT 2 cut(s) 344, 412
HinfI GANTC 4 cut(s) 581, 890, 934, 1173
HpaI GTTAAC 1 cut(s) 171
HpaII CCGG 6 cut(s) 195, 243, 252, 258, 845, 1227
HphI GGTGA 2 cut(s) 15, 859
Hpy166II GTNNAC 2 cut(s) 171, 1271
Hpy188I TCNGA 6 cut(s) 66, 202, 453, 478, 700, 801
Hpy188III TCNNGA 7 cut(s) 374, 380, 467, 575, 619, 957, 1017
Hpy8I GTNNAC 2 cut(s) 171, 1271
Hpy99I CGWCG 1 cut(s) 1371
HpyAV CCTTC 5 cut(s) 26, 142, 616, 754, 1256
HpyCH4III ACNGT 1 cut(s) 588
HpyCH4IV ACGT 4 cut(s) 109, 840, 1129, 1349
HpyCH4V TGCA 7 cut(s) 350, 566, 641, 805, 825, 1092, 1109
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 602, 811
HpyF3I CTNAG 5 cut(s) 44, 435, 513, 1122, 1246
HpySE526I ACGT 4 cut(s) 109, 840, 1129, 1349
Hsp92I GRCGYC 3 cut(s) 246, 594, 1366
HspAI GCGC 2 cut(s) 246, 1183
KasI GGCGCC 1 cut(s) 245
KspAI GTTAAC 1 cut(s) 171
Kzo9I GATC 5 cut(s) 159, 202, 376, 794, 1217
LmnI GCTCC 9 cut(s) 66, 74, 92, 134, 245, 324, 529, 1035, 1099
Lsp1109I GCAGC 5 cut(s) 550, 763, 1050, 1093, 1262
LweI GCATC 3 cut(s) 792, 874, 969
MaeI CTAG 3 cut(s) 507, 1286, 1319
MaeII ACGT 4 cut(s) 109, 840, 1129, 1349
MaeIII GTNAC 7 cut(s) 102, 112, 679, 926, 1125, 1157, 1303
MalI GATC 5 cut(s) 161, 204, 378, 796, 1219
MboI GATC 5 cut(s) 159, 202, 376, 794, 1217
MboII GAAGA 3 cut(s) 395, 563, 1157
MflI RGATCY 3 cut(s) 202, 794, 1217
MhlI GDGCHC 2 cut(s) 71, 1227
MluCI AATT 3 cut(s) 185, 809, 1112
Mly113I GGCGCC 1 cut(s) 246
MlyI GAGTC 1 cut(s) 1182
MmeI TCCRAC 2 cut(s) 180, 570
MnlI CCTC 5 cut(s) 315, 430, 913, 1151, 1259
Mph1103I ATGCAT 1 cut(s) 807
MroXI GAANNNNTTC 1 cut(s) 1116
MseI TTAA 9 cut(s) 35, 170, 488, 524, 689, 729, 816, 902, 1359
MslI CAYNNNNRTG 1 cut(s) 942
MspA1I CMGCKG 3 cut(s) 835, 1253, 1295
MspI CCGG 6 cut(s) 195, 243, 252, 258, 845, 1227
MspR9I CCNGG 4 cut(s) 196, 259, 294, 1227
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 3 cut(s) 254, 602, 811
NarI GGCGCC 1 cut(s) 246
NciI CCSGG 3 cut(s) 196, 259, 1227
NcoI CCATGG 1 cut(s) 1278
NdeI CATATG 1 cut(s) 1094
NdeII GATC 5 cut(s) 159, 202, 376, 794, 1217
NlaIV GGNNCC 5 cut(s) 247, 256, 326, 531, 1219
NmeAIII GCCGAG 1 cut(s) 685
NmuCI GTSAC 2 cut(s) 102, 112
NsiI ATGCAT 1 cut(s) 807
NspI RCATGY 2 cut(s) 1195, 1243
PagI TCATGA 1 cut(s) 466
PciI ACATGT 1 cut(s) 1239
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 1116
PfeI GAWTC 3 cut(s) 581, 890, 934
PinAI ACCGGT 1 cut(s) 251
PkrI GCNGC 5 cut(s) 565, 778, 1040, 1108, 1252
PleI GAGTC 1 cut(s) 1181
PluTI GGCGCC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 1181
Ppu21I YACGTR 2 cut(s) 110, 1130
PscI ACATGT 1 cut(s) 1239
Psp124BI GAGCTC 1 cut(s) 71
Psp1406I AACGTT 1 cut(s) 1349
Psp6I CCWGG 1 cut(s) 292
PspFI CCCAGC 2 cut(s) 482, 1253
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 5 cut(s) 247, 256, 326, 531, 1219
PspPI GGNCC 1 cut(s) 429
PstI CTGCAG 1 cut(s) 1111
PsuI RGATCY 3 cut(s) 202, 794, 1217
PvuII CAGCTG 1 cut(s) 1253
RsaI GTAC 3 cut(s) 234, 1244, 1317
RsaNI GTAC 3 cut(s) 233, 1243, 1316
RseI CAYNNNNRTG 1 cut(s) 942
SacI GAGCTC 1 cut(s) 71
SaqAI TTAA 9 cut(s) 35, 170, 488, 524, 689, 729, 816, 902, 1359
SatI GCNGC 5 cut(s) 564, 777, 1039, 1107, 1251
Sau3AI GATC 5 cut(s) 159, 202, 376, 794, 1217
Sau96I GGNCC 1 cut(s) 429
SchI GAGTC 1 cut(s) 1182
ScrFI CCNGG 4 cut(s) 196, 259, 294, 1227
SduI GDGCHC 2 cut(s) 71, 1227
SfaNI GCATC 3 cut(s) 792, 874, 969
SfcI CTRYAG 2 cut(s) 768, 1107
SfoI GGCGCC 1 cut(s) 247
SgrAI CRCCGGYG 1 cut(s) 251
SinI GGWCC 1 cut(s) 429
SmiMI CAYNNNNRTG 1 cut(s) 942
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 3 cut(s) 185, 809, 1112
SsiI CCGC 4 cut(s) 181, 605, 833, 1295
SspDI GGCGCC 1 cut(s) 245
SspI AATATT 1 cut(s) 500
SspMI CTAG 3 cut(s) 507, 1286, 1319
SstI GAGCTC 1 cut(s) 71
StyD4I CCNGG 4 cut(s) 194, 257, 292, 1225
StyI CCWWGG 1 cut(s) 1278
TaaI ACNGT 1 cut(s) 588
TaiI ACGT 4 cut(s) 112, 843, 1132, 1352
TaqI TCGA 7 cut(s) 135, 222, 618, 932, 969, 1059, 1143
TasI AATT 3 cut(s) 185, 809, 1112
TatI WGTACW 1 cut(s) 1242
TfiI GAWTC 3 cut(s) 581, 890, 934
Tru1I TTAA 9 cut(s) 35, 170, 488, 524, 689, 729, 816, 902, 1359
Tru9I TTAA 9 cut(s) 35, 170, 488, 524, 689, 729, 816, 902, 1359
TscAI CASTG 5 cut(s) 48, 304, 439, 1069, 1215
TseFI GTSAC 2 cut(s) 102, 112
TseI GCWGC 5 cut(s) 563, 776, 1038, 1106, 1250
Tsp45I GTSAC 2 cut(s) 102, 112
TspDTI ATGAA 9 cut(s) 48, 345, 455, 687, 822, 882, 987, 1141, 1275
TspGWI ACGGA 5 cut(s) 991, 1076, 1145, 1210, 1322
TspRI CASTG 5 cut(s) 48, 304, 439, 1069, 1215
VpaK11BI GGWCC 1 cut(s) 429
XapI RAATTY 1 cut(s) 1112
XceI RCATGY 2 cut(s) 1195, 1243
XcmI CCANNNNNNNNNTGG 1 cut(s) 905
XmnI GAANNNNTTC 1 cut(s) 1116
XspI CTAG 3 cut(s) 507, 1286, 1319
Zsp2I ATGCAT 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.