Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010015

Physical Location & Seq

Genomic Coordinates Reverse (-)

18534792 .. 18536431

Gene Structure 1640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g14960.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTGCAGCTTCGACTTTTCTCGCGCAACCAAAGGCCCACACAAACGATGCAGTCTCATCTTTCCGAAGTCACTTCAAGCCATCCAGCTTCGCCTCCCAGTCAACATCCTTTGGCTCCTCCAAATTCGCATCCAAATCGCTCTCCTTGCGCACCGCCGCAACCCGATCCGGCCGACCCGAACCCGCCACCTTGTCCCATTCGGAATCCCAGTCTGATCAAACATTCGATGTTTTAGTAATCGGAGCTGGAATAATCGGGTTGACCATTGCCCGGCAGTTCCTAATCGGGTCGGACCTGTCGGTCGCCGTAATTGACAAGTCTGTCCCTTGCTCTGGCGCCACCGGTGCCGGCCAAGGGTATATATGGATGGGACACAAAACTCCCGGCAGCGACCTTTGGGACTTGGGGCTCAGAAGCCAGAAGCTTTGGGAGGAATTGGCTGAGAGTTTGATTGAGCAAGGTTTGGACCCTCTGCAACTATTGGGTTGGAAGAAAACAGGAAGCTTGCTAGTTGGTAGAACTCCTGAGGACTTAGACGTGTTGAAAAGGAGGGTTAAGCAGGTATGTGAAGCCGGGTTAAGAGCGGAGTACTTGTCTTCCAGTGACTTGCATGTAAAGGAACCTGAACTCTTGGTTGATAAAGACACTGGAGCTGCCTTTCTACCTGATGATTGCCAGTTGGATGCACGCTGTGGTGTTGAATATCTTGAACAGGGTAACAGGAATTATGCATCGAAGGGTAGATATGCTGAGTTTTATAATCATCCGGTGATTAGTTTATTAAGCTGGTGGCAAGGGGGAGGTTGTGGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAO

Protein Analysis

273

Amino Acids

29.42

Weight (kDa)

6.08

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48440 AT5G48440 AT5G48440
fragaria_vesca	FvH4_2g17671
malus_domestica	MD05G1157000.v1.1
prunus_persica	Prupe.8G189100_v2.0.a1 Prupe.8G189100_v2.0.a1 Prupe.8G189100_v2.0.a1 Prupe.8G189100_v2.0.a1 Prupe.8G189200_v2.0.a1
pyrus_communis	pycom05g14960
rosa_chinensis	RchiOBHm_Chr6g0282641
rosa_laevigata	RLG00000012878
rosa_multiflora	Rmu_sc0003070.1_g000011
rosa_roxburghii	Rroxscaffold_7G00186150
rosa_rugosa	Rorug06G0148200
rosa_samantha	Rh6AG261600 Rh6BG264700 Rh6CG263800 Rh6DG256000
rosa_wichuraiana	Rw6G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	762
AasI	GACNNNNNNGTC	2 cut(s)	302, 323
Acc16I	TGCGCA	1 cut(s)	152
Acc36I	ACCTGC	1 cut(s)	553
AccB1I	GGYRCC	2 cut(s)	338, 347
AccBSI	CCGCTC	1 cut(s)	587
AccII	CGCG	1 cut(s)	26
AciI	CCGC	4 cut(s)	156, 159, 186, 587
AclWI	GGATC	1 cut(s)	162
AcoI	YGGCCR	2 cut(s)	172, 352
AcsI	RAATTY	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	339
AdeI	CACNNNGTG	1 cut(s)	695
AfaI	GTAC	1 cut(s)	593
AfiI	CCNNNNNNNGG	3 cut(s)	273, 335, 357
AflIII	ACRYGT	1 cut(s)	540
AgeI	ACCGGT	1 cut(s)	344
AgsI	TTSAA	4 cut(s)	79, 547, 704, 713
AjiI	CACGTC	1 cut(s)	541
AluBI	AGCT	7 cut(s)	11, 90, 248, 427, 507, 656, 789
AluI	AGCT	7 cut(s)	11, 90, 248, 427, 507, 656, 789
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	162
AoxI	GGCC	3 cut(s)	36, 172, 352
ApeKI	GCWGC	4 cut(s)	5, 8, 390, 656
ApoI	RAATTY	1 cut(s)	125
AsiGI	ACCGGT	1 cut(s)	344
AspLEI	GCGC	3 cut(s)	28, 153, 341
AspS9I	GGNCC	3 cut(s)	37, 295, 469
AsuC2I	CCSGG	3 cut(s)	274, 387, 577
AsuHPI	GGTGA	1 cut(s)	784
AvaII	GGWCC	2 cut(s)	295, 469
AxyI	CCTNAGG	1 cut(s)	528
BanI	GGYRCC	2 cut(s)	338, 347
BanII	GRGCYC	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	591
BbvI	GCAGC	3 cut(s)	20, 402, 643
BccI	CCATC	2 cut(s)	91, 364
BceAI	ACGGC	1 cut(s)	293
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BclI	TGATCA	1 cut(s)	217
BcnI	CCSGG	3 cut(s)	274, 387, 577
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	342
BfuAI	ACCTGC	1 cut(s)	553
BisI	GCNGC	5 cut(s)	6, 9, 159, 391, 657
BlsI	GCNGC	5 cut(s)	7, 10, 160, 392, 658
BmcAI	AGTACT	1 cut(s)	593
Bme1390I	CCNGG	3 cut(s)	274, 387, 577
Bme18I	GGWCC	2 cut(s)	295, 469
BmgBI	CACGTC	1 cut(s)	541
BmgT120I	GGNCC	3 cut(s)	37, 295, 469
BmiI	GGNNCC	5 cut(s)	118, 340, 349, 471, 624
BmrFI	CCNGG	3 cut(s)	274, 387, 577
BmrI	ACTGGG	2 cut(s)	94, 205
BmsI	GCATC	4 cut(s)	40, 140, 676, 743
BmuI	ACTGGG	2 cut(s)	94, 205
BpiI	GAAGAC	1 cut(s)	591
BpmI	CTGGAG	1 cut(s)	672
BpuMI	CCSGG	3 cut(s)	274, 387, 577
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	355
BsaWI	WCCGGW	2 cut(s)	344, 769
BsaXI	ACNNNNNCTCC	2 cut(s)	581, 611
Bsc4I	CCNNNNNNNGG	3 cut(s)	273, 335, 357
Bse118I	RCCGGY	2 cut(s)	344, 350
Bse1I	ACTGG	5 cut(s)	100, 211, 603, 655, 679
Bse21I	CCTNAGG	1 cut(s)	528
Bse3DI	GCAATG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	6 cut(s)	83, 107, 131, 375, 691, 766
BseLI	CCNNNNNNNGG	3 cut(s)	273, 335, 357
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	4 cut(s)	427, 435, 519, 744
BseNI	ACTGG	5 cut(s)	100, 211, 603, 655, 679
BseRI	GAGGAG	1 cut(s)	109
BseX3I	CGGCCG	1 cut(s)	172
BseXI	GCAGC	3 cut(s)	20, 402, 643
Bsh1236I	CGCG	1 cut(s)	26
Bsh1285I	CGRYCG	2 cut(s)	175, 306
BshFI	GGCC	3 cut(s)	38, 174, 354
BshNI	GGYRCC	2 cut(s)	338, 347
BshTI	ACCGGT	1 cut(s)	344
BsiEI	CGRYCG	2 cut(s)	175, 306
BsiSI	CCGG	7 cut(s)	171, 274, 345, 351, 387, 576, 770
BslFI	GGGAC	4 cut(s)	181, 311, 387, 416
BslI	CCNNNNNNNGG	3 cut(s)	273, 335, 357
BsmAI	GTCTC	1 cut(s)	61
BsmFI	GGGAC	4 cut(s)	181, 311, 387, 416
BsnI	GGCC	3 cut(s)	38, 174, 354
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	2 cut(s)	167, 217
BspACI	CCGC	4 cut(s)	156, 159, 186, 587
BspANI	GGCC	3 cut(s)	38, 174, 354
BspCNI	CTCAG	4 cut(s)	426, 436, 520, 745
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	5 cut(s)	118, 340, 349, 471, 624
BspMAI	CTGCAG	1 cut(s)	10
BspMI	ACCTGC	1 cut(s)	553
BspPI	GGATC	1 cut(s)	162
BspT107I	GGYRCC	2 cut(s)	338, 347
BsrBI	CCGCTC	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	267
BsrFI	RCCGGY	2 cut(s)	344, 350
BsrI	ACTGG	5 cut(s)	100, 211, 603, 655, 679
BssAI	RCCGGY	2 cut(s)	344, 350
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	2 cut(s)	167, 217
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	355
BstACI	GRCGYC	1 cut(s)	339
BstC8I	GCNNGC	3 cut(s)	352, 509, 691
BstDEI	CTNAG	5 cut(s)	413, 444, 528, 535, 753
BstF5I	GGATG	6 cut(s)	83, 107, 131, 375, 691, 766
BstFNI	CGCG	1 cut(s)	26
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	3 cut(s)	28, 153, 341
BstKTI	GATC	2 cut(s)	170, 220
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	2 cut(s)	167, 217
BstMCI	CGRYCG	2 cut(s)	175, 306
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 347
BstNSI	RCATGY	1 cut(s)	617
BstSCI	CCNGG	3 cut(s)	272, 385, 575
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	3 cut(s)	20, 402, 643
BstV2I	GAAGAC	1 cut(s)	591
BstZI	CGGCCG	1 cut(s)	172
Bsu36I	CCTNAGG	1 cut(s)	528
BsuRI	GGCC	3 cut(s)	38, 174, 354
BtrI	CACGTC	1 cut(s)	541
BtsCI	GGATG	6 cut(s)	83, 107, 131, 375, 691, 766
BtsIMutI	CAGTG	2 cut(s)	610, 648
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	3 cut(s)	352, 509, 691
CfoI	GCGC	3 cut(s)	28, 153, 341
Cfr10I	RCCGGY	2 cut(s)	344, 350
Cfr13I	GGNCC	3 cut(s)	37, 295, 469
Csp6I	GTAC	1 cut(s)	592
CspAI	ACCGGT	1 cut(s)	344
CviAII	CATG	1 cut(s)	614
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	5 cut(s)	413, 444, 528, 535, 753
DinI	GGCGCC	1 cut(s)	340
DpnI	GATC	2 cut(s)	169, 219
DpnII	GATC	2 cut(s)	167, 217
DraIII	CACNNNGTG	1 cut(s)	695
DrdI	GACNNNNNNGTC	2 cut(s)	302, 323
DseDI	GACNNNNNNGTC	2 cut(s)	302, 323
EaeI	YGGCCR	2 cut(s)	172, 352
EagI	CGGCCG	1 cut(s)	172
EclXI	CGGCCG	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	414
Eco47I	GGWCC	2 cut(s)	295, 469
Eco52I	CGGCCG	1 cut(s)	172
Eco81I	CCTNAGG	1 cut(s)	528
EcoT14I	CCWWGG	1 cut(s)	355
EcoT22I	ATGCAT	1 cut(s)	736
EcoT38I	GRGCYC	1 cut(s)	414
EgeI	GGCGCC	1 cut(s)	340
EheI	GGCGCC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	1 cut(s)	617
FaiI	YATR	8 cut(s)	363, 365, 367, 568, 615, 732, 750, 762
FaqI	GGGAC	4 cut(s)	181, 311, 387, 416
FatI	CATG	1 cut(s)	613
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	5 cut(s)	6, 9, 159, 391, 657
FokI	GGATG	6 cut(s)	70, 94, 118, 382, 698, 753
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	5 cut(s)	6, 9, 159, 391, 657
FspBI	CTAG	1 cut(s)	512
FspI	TGCGCA	1 cut(s)	152
GlaI	GCGC	3 cut(s)	27, 152, 340
GluI	GCNGC	5 cut(s)	6, 9, 159, 391, 657
GsuI	CTGGAG	1 cut(s)	672
HaeII	RGCGCY	1 cut(s)	342
HaeIII	GGCC	3 cut(s)	38, 174, 354
HapII	CCGG	7 cut(s)	171, 274, 345, 351, 387, 576, 770
HhaI	GCGC	3 cut(s)	28, 153, 341
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	1 cut(s)	617
Hin6I	GCGC	3 cut(s)	26, 151, 339
HinP1I	GCGC	3 cut(s)	26, 151, 339
HincII	GTYRAC	2 cut(s)	105, 264
HindII	GTYRAC	2 cut(s)	105, 264
HindIII	AAGCTT	2 cut(s)	425, 505
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	7 cut(s)	171, 274, 345, 351, 387, 576, 770
HphI	GGTGA	1 cut(s)	784
Hpy166II	GTNNAC	2 cut(s)	105, 264
Hpy188I	TCNGA	6 cut(s)	68, 205, 217, 245, 295, 416
Hpy188III	TCNNGA	2 cut(s)	527, 710
Hpy8I	GTNNAC	2 cut(s)	105, 264
HpyAV	CCTTC	1 cut(s)	733
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	6 cut(s)	8, 53, 478, 613, 689, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 347
HpyF3I	CTNAG	5 cut(s)	413, 444, 528, 535, 753
HpySE526I	ACGT	1 cut(s)	540
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	1 cut(s)	617
HspAI	GCGC	3 cut(s)	26, 151, 339
KasI	GGCGCC	1 cut(s)	338
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	167, 217
LmnI	GCTCC	3 cut(s)	122, 245, 653
Lsp1109I	GCAGC	3 cut(s)	20, 402, 643
LweI	GCATC	4 cut(s)	40, 140, 676, 743
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	3 cut(s)	71, 605, 719
MalI	GATC	2 cut(s)	169, 219
MbiI	CCGCTC	1 cut(s)	587
MboI	GATC	2 cut(s)	167, 217
MboII	GAAGA	2 cut(s)	505, 591
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	4 cut(s)	125, 312, 437, 727
Mly113I	GGCGCC	1 cut(s)	339
MmeI	TCCRAC	3 cut(s)	273, 470, 663
MnlI	CCTC	7 cut(s)	106, 130, 427, 483, 523, 546, 797
Mph1103I	ATGCAT	1 cut(s)	736
MroNI	GCCGGC	1 cut(s)	350
MseI	TTAA	4 cut(s)	558, 581, 785, 817
MspI	CCGG	7 cut(s)	171, 274, 345, 351, 387, 576, 770
MspR9I	CCNGG	3 cut(s)	274, 387, 577
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	148, 347
NaeI	GCCGGC	1 cut(s)	352
NarI	GGCGCC	1 cut(s)	339
NciI	CCSGG	3 cut(s)	274, 387, 577
NdeII	GATC	2 cut(s)	167, 217
NgoMIV	GCCGGC	1 cut(s)	350
NlaIII	CATG	1 cut(s)	617
NlaIV	GGNNCC	5 cut(s)	118, 340, 349, 471, 624
NmuCI	GTSAC	2 cut(s)	71, 605
NsbI	TGCGCA	1 cut(s)	152
NsiI	ATGCAT	1 cut(s)	736
NspI	RCATGY	1 cut(s)	617
PdiI	GCCGGC	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	206
PinAI	ACCGGT	1 cut(s)	344
PkrI	GCNGC	5 cut(s)	7, 10, 160, 392, 658
PluTI	GGCGCC	1 cut(s)	342
PsiI	TTATAA	1 cut(s)	762
PspN4I	GGNNCC	5 cut(s)	118, 340, 349, 471, 624
PspPI	GGNCC	3 cut(s)	37, 295, 469
PstI	CTGCAG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
SaqAI	TTAA	4 cut(s)	558, 581, 785, 817
SatI	GCNGC	5 cut(s)	6, 9, 159, 391, 657
Sau3AI	GATC	2 cut(s)	167, 217
Sau96I	GGNCC	3 cut(s)	37, 295, 469
ScaI	AGTACT	1 cut(s)	593
ScrFI	CCNGG	3 cut(s)	274, 387, 577
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	4 cut(s)	40, 140, 676, 743
SfcI	CTRYAG	1 cut(s)	6
SfoI	GGCGCC	1 cut(s)	340
SgrAI	CRCCGGYG	1 cut(s)	344
SinI	GGWCC	2 cut(s)	295, 469
Sse9I	AATT	4 cut(s)	125, 312, 437, 727
SsiI	CCGC	4 cut(s)	156, 159, 186, 587
SspDI	GGCGCC	1 cut(s)	338
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	3 cut(s)	272, 385, 575
StyI	CCWWGG	1 cut(s)	355
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	3 cut(s)	14, 228, 737
TaqII	GACCGA	1 cut(s)	292
TasI	AATT	4 cut(s)	125, 312, 437, 727
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	4 cut(s)	558, 581, 785, 817
Tru9I	TTAA	4 cut(s)	558, 581, 785, 817
TscAI	CASTG	2 cut(s)	610, 655
TseFI	GTSAC	2 cut(s)	71, 605
TseI	GCWGC	4 cut(s)	5, 8, 390, 656
Tsp45I	GTSAC	2 cut(s)	71, 605
TspRI	CASTG	2 cut(s)	610, 655
VpaK11BI	GGWCC	2 cut(s)	295, 469
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	1 cut(s)	617
XspI	CTAG	1 cut(s)	512
ZrmI	AGTACT	1 cut(s)	593
Zsp2I	ATGCAT	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.