AT5G51960

Complex1_LYR-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014205
Physical Location & Seq
Forward (+)
21110333 .. 21111424
1092 bp
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UTR
Exon/CDS
Intron
AT5G51960.2

Sequence Viewer

Length: 312 bp
ATGAGTGGTGAAGTTGTTTTAGCTGCTAGAGTTTATCGTGACCTTCTCAAAGCAGTGGTGAAACATGTTGGTAAAGAAGATCACAAGTCTCATTTCTTAGACTTTGTTAAGCAAGAATTTCGAAAGAATGCAAACTCAGAGAAAATAAACCTTGCTCGAAATTACACATATCTTCTCAATAGCATTCACTCTCACAAGGATCTGCTGTTCTCATACAACATTGCGGTTGATAGAACTGAAGAAATGAAACGAGTGCTTAATAAATCTGCAGCCAGTGTAGGGCTTCGTCTTCCTGAAGTTTACGAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR Complex1_LYR_2

Protein Analysis

103

Amino Acids

11.9

Weight (kDa)

9.4

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR_2 PF13233 10 - 95 7.4e-09 Complex1_LYR-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51960 AT5G51960
fragaria_vesca FvH4_7g20160
malus_domestica MD01G1131200.v1.1 MD07G1179300.v1.1
prunus_persica Prupe.2G218600_v2.0.a1
pyrus_communis pycom07g17300
rosa_chinensis RchiOBHm_Chr1g0364121
rosa_laevigata RLG00000027514
rosa_multiflora Rmu_sc0000071.1_g000018
rosa_roxburghii Rroxscaffold_4G00292620
rosa_rugosa Rorug01G0313700
rosa_samantha Rh1AG321200 Rh1BG284400 Rh1CG300800 Rh1DG315800
rosa_wichuraiana Rw1G028480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 224
AclWI GGATC 1 cut(s) 207
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 279
AflIII ACRYGT 1 cut(s) 64
AloI GAACNNNNNNTCC 2 cut(s) 191, 223
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 23, 269
ApoI RAATTY 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 20, 70
AsuII TTCGAA 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 281
BbvI GCAGC 2 cut(s) 10, 281
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 267
BisI GCNGC 2 cut(s) 24, 270
BlsI GCNGC 2 cut(s) 25, 271
BpiI GAAGAC 1 cut(s) 281
Bpu14I TTCGAA 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 273
Bse3DI GCAATG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 279
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 273
BseXI GCAGC 2 cut(s) 10, 281
BslI CCNNNNNNNGG 1 cut(s) 279
BsmAI GTCTC 1 cut(s) 93
BsmI GAATGC 2 cut(s) 133, 183
Bsp119I TTCGAA 1 cut(s) 121
Bsp143I GATC 2 cut(s) 79, 199
BspACI CCGC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 149
BspMAI CTGCAG 1 cut(s) 271
BspPI GGATC 1 cut(s) 207
BspT104I TTCGAA 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 219
BsrI ACTGG 1 cut(s) 273
BssMI GATC 2 cut(s) 79, 199
BstBI TTCGAA 1 cut(s) 121
BstDEI CTNAG 2 cut(s) 97, 136
BstKTI GATC 2 cut(s) 82, 202
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 2 cut(s) 79, 199
BstNSI RCATGY 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 2 cut(s) 10, 281
BstV2I GAAGAC 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 2 cut(s) 60, 280
CviAII CATG 1 cut(s) 65
CviJI RGCY 4 cut(s) 23, 272, 283, 307
CviKI_1 RGCY 4 cut(s) 23, 272, 283, 307
DdeI CTNAG 2 cut(s) 97, 136
DpnI GATC 2 cut(s) 81, 201
DpnII GATC 2 cut(s) 79, 199
Eco57I CTGAAG 1 cut(s) 258
FaeI CATG 1 cut(s) 68
FaiI YATR 3 cut(s) 66, 169, 214
FatI CATG 1 cut(s) 64
Fnu4HI GCNGC 2 cut(s) 24, 270
Fsp4HI GCNGC 2 cut(s) 24, 270
FspBI CTAG 1 cut(s) 27
GluI GCNGC 2 cut(s) 24, 270
Hin1II CATG 1 cut(s) 68
HphI GGTGA 2 cut(s) 20, 70
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 38, 293
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 53
HpyCH4V TGCA 2 cut(s) 131, 269
HpyF3I CTNAG 2 cut(s) 97, 136
Hsp92II CATG 1 cut(s) 68
Kzo9I GATC 2 cut(s) 79, 199
LpnPI CCDG 2 cut(s) 286, 306
Lsp1109I GCAGC 2 cut(s) 10, 281
MaeI CTAG 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 38
MalI GATC 2 cut(s) 81, 201
MboI GATC 2 cut(s) 79, 199
MboII GAAGA 4 cut(s) 89, 164, 251, 281
MflI RGATCY 1 cut(s) 199
MluCI AATT 2 cut(s) 116, 160
MseI TTAA 2 cut(s) 108, 258
Mva1269I GAATGC 2 cut(s) 133, 183
NdeII GATC 2 cut(s) 79, 199
NlaIII CATG 1 cut(s) 68
NmuCI GTSAC 1 cut(s) 38
NspI RCATGY 1 cut(s) 68
NspV TTCGAA 1 cut(s) 121
PciI ACATGT 1 cut(s) 64
PctI GAATGC 2 cut(s) 133, 183
PkrI GCNGC 2 cut(s) 25, 271
PscI ACATGT 1 cut(s) 64
PstI CTGCAG 1 cut(s) 271
PsuI RGATCY 1 cut(s) 199
SaqAI TTAA 2 cut(s) 108, 258
SatI GCNGC 2 cut(s) 24, 270
Sau3AI GATC 2 cut(s) 79, 199
SetI ASST 3 cut(s) 25, 45, 153
SfcI CTRYAG 1 cut(s) 267
SfuI TTCGAA 1 cut(s) 121
Sse9I AATT 2 cut(s) 116, 160
SsiI CCGC 1 cut(s) 224
SspMI CTAG 1 cut(s) 27
TaqI TCGA 2 cut(s) 121, 157
TasI AATT 2 cut(s) 116, 160
Tru1I TTAA 2 cut(s) 108, 258
Tru9I TTAA 2 cut(s) 108, 258
TscAI CASTG 2 cut(s) 60, 280
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 2 cut(s) 23, 269
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 260
TspRI CASTG 2 cut(s) 60, 280
XapI RAATTY 1 cut(s) 116
XceI RCATGY 1 cut(s) 68
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.