Rorug01G0313700

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014205
Physical Location & Seq
Reverse (-)
43173204 .. 43174667
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0313700.1

Sequence Viewer

Length: 1464 bp
ATGCAGAAAAACCCTTTAACTGCTCTGAAAATATTCAGTGAAGCACAGTCCAAGTACCCCAATTACCGCCACAATGGTCCGGTCTATGCCACCATGATTGGCATTCTCGGAAGCTCAGGCCGAATCACTGAGATGAAGGAAGTCATTAATCAGATGAAGAATGACTCCTGTGAATGCAAAGACTCGGTTTTTGTAGCTGCCATCAAGACCTATGCAAGAGCCGGGCTGCTGGACGAGGCAGTGTCTCTTTTTAAGAACCTTTCACAGTTCAACTGTGTGAACTGGACGCAGTCTTTCAATACCCTGGTGGAGATTATGGTTGAAGAGTCCAAGCTTGAAGACGCTTGTCGCCTTTTCGTGGAGCATTGCTGTGGGTGGGAAGTGAGCTCAAGGGTTCGGTCTTTGAATTTGCTTATGCTTGCTTTGTGCCAGAAGGGCCGTTCGGATATTGCATTGCATGTTTTCCAAGAGATGGATTATCAGAGTTGCAATCCGGATAGGGAAAGTTACCGGATACTAATGAGAGGGTTGTGTGAAGATCGGAGGCTAAATGAGGCAACCCATTTGTTGTATTCAATGTTTTGGAGGATATCTCAGAAGGGTTGTGCTGAAGATATAGTGATATATAGAATCTTGTTAGATGCGTTATGTGATAATGGGAAGATTGAAGAGGCTGTGGAAATTCTTGGCAAGATTTTAAGGAAGGGGCTGAAGGCGCCTAAGAAGTTTCGCCACCAACTTGATCTTAGTCAGTATAATTATGGTGAAGACACAGAAGGCATCAAGCGTTTGATCAATGAGGCTCTGGTCAGAGGTGGAAATCCCAGTTTGGCAAGTTACAGTGCTATGGCAATCGATCTTTACAACGAAAATAAGATTGTCGAGGCTGACACAGTACTAAACGAAATGCAAGATAGGGGCTTCAGGCCAACATCTGTTGTTTATGGAGCAAAGGCGGCCGCATTATGTAAGGAAAGGAAAGTTGTTGAAGCAGTGGAGGTGATTGAAAAGGAGATGGTGTGGGCGAACTGTGTTCCAACTGTGAAAGTGTTCAGTATTGTGGTGAGAGGCCTTTGTCATGAAAAGCAGTCAGTTCTGGCTTTTGAGTTTTTGAAGAAGATGGAAAAGCAGGTGGGTTGTGTAGCTGACAAGGAAACTTACAGCGTTTTAGTTGATGGGCTTTGTAGTGAGAGTGGATTTCTTGAAGCAAGTCGAGTATTGCAGGAGATGCTTATCAAGTCAAGATTGCCTTGTGCCGAAACCTACTGTAAGGTTATTAGGGGACTTTGTTCAGTAGGGAGGCAATACGATGCTGTTATGTGGTTGGAGGAGATGCTAAGTCAGGCAATACTGCCAGAATATACTGTATGGAACTCATTGGTGGCATCTGTGTGTTGTAACATTGCAAATATTGAGGCGTGCTCTGAGGTCTACAACCGGCTAAAGACTACTACCTCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR Complex1_LYR_2

Protein Analysis

487

Amino Acids

55.06

Weight (kDa)

6.19

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 134 - 178 3.1e-10 PPR repeat family
PPR_1 PF12854 200 - 230 6e-06 PPR repeat
PPR_2 PF13041 346 - 395 2.2e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51960 AT5G51960
fragaria_vesca FvH4_7g20160
malus_domestica MD01G1131200.v1.1 MD07G1179300.v1.1
prunus_persica Prupe.2G218600_v2.0.a1
pyrus_communis pycom07g17300
rosa_chinensis RchiOBHm_Chr1g0364121
rosa_laevigata RLG00000027514
rosa_multiflora Rmu_sc0000071.1_g000018
rosa_roxburghii Rroxscaffold_4G00292620
rosa_rugosa Rorug01G0313700
rosa_samantha Rh1AG321200 Rh1BG284400 Rh1CG300800 Rh1DG315800
rosa_wichuraiana Rw1G028480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1120
Acc36I ACCTGC 1 cut(s) 1120
AccB1I GGYRCC 1 cut(s) 715
AccB7I CCANNNNNTGG 1 cut(s) 472
AccI GTMKAC 1 cut(s) 1431
AccIII TCCGGA 1 cut(s) 493
AciI CCGC 3 cut(s) 67, 956, 960
AcoI YGGCCR 1 cut(s) 957
AcsI RAATTY 2 cut(s) 406, 681
AcuI CTGAAG 3 cut(s) 630, 731, 907
AcyI GRCGYC 1 cut(s) 716
AfaI GTAC 2 cut(s) 56, 897
AfiI CCNNNNNNNGG 2 cut(s) 358, 472
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 5 cut(s) 114, 197, 334, 387, 1145
AluI AGCT 5 cut(s) 114, 197, 334, 387, 1145
Alw21I GWGCWC 2 cut(s) 389, 1424
Alw26I GTCTC 1 cut(s) 249
Aor13HI TCCGGA 1 cut(s) 493
AoxI GGCC 5 cut(s) 118, 436, 926, 957, 1069
ApeKI GCWGC 2 cut(s) 197, 226
ApoI RAATTY 2 cut(s) 406, 681
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AseI ATTAAT 1 cut(s) 147
Asp700I GAANNNNTTC 2 cut(s) 32, 1049
AspLEI GCGC 1 cut(s) 718
AspS9I GGNCC 2 cut(s) 77, 436
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 3 cut(s) 776, 1012, 1075
AvaII GGWCC 1 cut(s) 77
BanI GGYRCC 1 cut(s) 715
BanII GRGCYC 1 cut(s) 389
BbsI GAAGAC 2 cut(s) 345, 774
Bbv12I GWGCWC 2 cut(s) 389, 1424
BbvI GCAGC 2 cut(s) 184, 213
BccI CCATC 5 cut(s) 209, 466, 1009, 1114, 1169
BceAI ACGGC 1 cut(s) 423
BciT130I CCWGG 1 cut(s) 305
BciVI GTATCC 1 cut(s) 507
BclI TGATCA 1 cut(s) 792
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 719
BfuAI ACCTGC 1 cut(s) 1120
BfuI GTATCC 1 cut(s) 507
BglI GCCNNNNNGGC 1 cut(s) 435
BisI GCNGC 4 cut(s) 198, 227, 957, 960
BlsI GCNGC 4 cut(s) 199, 228, 958, 961
BmcAI AGTACT 1 cut(s) 897
Bme1390I CCNGG 2 cut(s) 223, 305
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 77, 436
BmiI GGNNCC 1 cut(s) 717
BmrFI CCNGG 2 cut(s) 223, 305
BmrI ACTGGG 1 cut(s) 819
BmsI GCATC 6 cut(s) 631, 789, 1218, 1300, 1323, 1394
BmuI ACTGGG 1 cut(s) 819
BoxI GACNNNNGTC 1 cut(s) 345
BpiI GAAGAC 2 cut(s) 345, 774
BplI GAGNNNNNCTC 4 cut(s) 577, 609, 1406, 1438
Bpu10I CCTNAGC 1 cut(s) 115
BpuEI CTTGAG 1 cut(s) 373
BpuMI CCSGG 1 cut(s) 223
Bsa29I ATCGAT 1 cut(s) 855
BsaBI GATNNNNATC 1 cut(s) 1232
BsaHI GRCGYC 1 cut(s) 716
BsaJI CCNNGG 1 cut(s) 303
BsaWI WCCGGW 3 cut(s) 79, 493, 510
BsaXI ACNNNNNCTCC 2 cut(s) 1004, 1034
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 472
Bse118I RCCGGY 1 cut(s) 1437
Bse1I ACTGG 2 cut(s) 287, 825
Bse3DI GCAATG 3 cut(s) 364, 452, 1401
Bse8I GATNNNNATC 1 cut(s) 1232
BseAI TCCGGA 1 cut(s) 493
BseBI CCWGG 1 cut(s) 305
BseCI ATCGAT 1 cut(s) 855
BseDI CCNNGG 1 cut(s) 303
BseJI GATNNNNATC 1 cut(s) 1232
BseLI CCNNNNNNNGG 2 cut(s) 358, 472
BseMI GCAATG 3 cut(s) 364, 452, 1401
BseMII CTCAG 4 cut(s) 120, 129, 608, 1416
BseNI ACTGG 2 cut(s) 287, 825
BseRI GAGGAG 1 cut(s) 1343
BseX3I CGGCCG 1 cut(s) 957
BseXI GCAGC 2 cut(s) 184, 213
Bsh1285I CGRYCG 1 cut(s) 960
BshFI GGCC 5 cut(s) 120, 438, 928, 959, 1071
BshNI GGYRCC 1 cut(s) 715
BshVI ATCGAT 1 cut(s) 855
BsiEI CGRYCG 1 cut(s) 960
BsiHKAI GWGCWC 2 cut(s) 389, 1424
BsiSI CCGG 5 cut(s) 80, 222, 494, 511, 1438
BslFI GGGAC 1 cut(s) 1296
BslI CCNNNNNNNGG 2 cut(s) 358, 472
BsmAI GTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 1296
BsmI GAATGC 2 cut(s) 102, 179
BsnI GGCC 5 cut(s) 120, 438, 928, 959, 1071
Bsp1286I GDGCHC 2 cut(s) 389, 1424
Bsp13I TCCGGA 1 cut(s) 493
Bsp143I GATC 4 cut(s) 538, 742, 792, 856
BspACI CCGC 3 cut(s) 67, 956, 960
BspANI GGCC 5 cut(s) 120, 438, 928, 959, 1071
BspCNI CTCAG 4 cut(s) 121, 128, 607, 1417
BspDI ATCGAT 1 cut(s) 855
BspEI TCCGGA 1 cut(s) 493
BspHI TCATGA 1 cut(s) 1078
BspLI GGNNCC 1 cut(s) 717
BspMI ACCTGC 1 cut(s) 1120
BspT107I GGYRCC 1 cut(s) 715
BsrDI GCAATG 3 cut(s) 364, 452, 1401
BsrFI RCCGGY 1 cut(s) 1437
BsrI ACTGG 2 cut(s) 287, 825
BssAI RCCGGY 1 cut(s) 1437
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 4 cut(s) 538, 742, 792, 856
BssNI GRCGYC 1 cut(s) 716
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 9 cut(s) 48, 267, 275, 842, 895, 1031, 1042, 1268, 1366
Bst6I CTCTTC 2 cut(s) 318, 663
BstACI GRCGYC 1 cut(s) 716
BstAPI GCANNNNNTGC 1 cut(s) 1228
BstC8I GCNNGC 2 cut(s) 420, 1420
BstDEI CTNAG 7 cut(s) 115, 129, 594, 720, 746, 1337, 1425
BstH2I RGCGCY 1 cut(s) 719
BstHHI GCGC 1 cut(s) 718
BstKTI GATC 4 cut(s) 541, 745, 795, 859
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 4 cut(s) 538, 742, 792, 856
BstMCI CGRYCG 1 cut(s) 960
BstMWI GCNNNNNNNGC 4 cut(s) 435, 715, 956, 1228
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 461
BstPAI GACNNNNGTC 1 cut(s) 345
BstSCI CCNGG 2 cut(s) 221, 303
BstV1I GCAGC 2 cut(s) 184, 213
BstV2I GAAGAC 2 cut(s) 345, 774
BstZI CGGCCG 1 cut(s) 957
Bsu15I ATCGAT 1 cut(s) 855
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 5 cut(s) 120, 438, 928, 959, 1071
BsuTUI ATCGAT 1 cut(s) 855
BtsI GCAGTG 2 cut(s) 246, 999
BtsIMutI CAGTG 5 cut(s) 43, 126, 246, 847, 999
BveI ACCTGC 1 cut(s) 1120
Cac8I GCNNGC 2 cut(s) 420, 1420
CciI TCATGA 1 cut(s) 1078
CciNI GCGGCCGC 1 cut(s) 957
CfoI GCGC 1 cut(s) 718
Cfr10I RCCGGY 1 cut(s) 1437
Cfr13I GGNCC 2 cut(s) 77, 436
ClaI ATCGAT 1 cut(s) 855
CseI GACGC 2 cut(s) 295, 350
Csp6I GTAC 2 cut(s) 55, 896
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 3 cut(s) 94, 458, 1079
CviQI GTAC 2 cut(s) 55, 896
DdeI CTNAG 7 cut(s) 115, 129, 594, 720, 746, 1337, 1425
DinI GGCGCC 1 cut(s) 717
DpnI GATC 4 cut(s) 540, 744, 794, 858
DpnII GATC 4 cut(s) 538, 742, 792, 856
EaeI YGGCCR 1 cut(s) 957
EagI CGGCCG 1 cut(s) 957
Eam1104I CTCTTC 2 cut(s) 318, 663
EarI CTCTTC 2 cut(s) 318, 663
Ecl136II GAGCTC 1 cut(s) 387
EclXI CGGCCG 1 cut(s) 957
Eco147I AGGCCT 1 cut(s) 1071
Eco24I GRGCYC 1 cut(s) 389
Eco32I GATATC 1 cut(s) 591
Eco47I GGWCC 1 cut(s) 77
Eco52I CGGCCG 1 cut(s) 957
Eco53kI GAGCTC 1 cut(s) 387
Eco57I CTGAAG 3 cut(s) 630, 731, 907
EcoICRI GAGCTC 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 303
EcoRV GATATC 1 cut(s) 591
EcoT38I GRGCYC 1 cut(s) 389
EgeI GGCGCC 1 cut(s) 717
EheI GGCGCC 1 cut(s) 717
FaeI CATG 3 cut(s) 97, 461, 1082
FalI AAGNNNNNCTT 2 cut(s) 1234, 1266
FaqI GGGAC 1 cut(s) 1296
FatI CATG 3 cut(s) 93, 457, 1078
FbaI TGATCA 1 cut(s) 792
FblI GTMKAC 1 cut(s) 1431
Fnu4HI GCNGC 4 cut(s) 198, 227, 957, 960
FriOI GRGCYC 1 cut(s) 389
Fsp4HI GCNGC 4 cut(s) 198, 227, 957, 960
GlaI GCGC 1 cut(s) 717
GluI GCNGC 4 cut(s) 198, 227, 957, 960
HaeII RGCGCY 1 cut(s) 719
HaeIII GGCC 5 cut(s) 120, 438, 928, 959, 1071
HapII CCGG 5 cut(s) 80, 222, 494, 511, 1438
HgaI GACGC 2 cut(s) 295, 350
HhaI GCGC 1 cut(s) 718
Hin1I GRCGYC 1 cut(s) 716
Hin1II CATG 3 cut(s) 97, 461, 1082
Hin6I GCGC 1 cut(s) 716
HinP1I GCGC 1 cut(s) 716
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 5 cut(s) 123, 164, 182, 326, 630
HpaII CCGG 5 cut(s) 80, 222, 494, 511, 1438
HphI GGTGA 3 cut(s) 776, 1012, 1075
Hpy166II GTNNAC 2 cut(s) 280, 1432
Hpy188I TCNGA 9 cut(s) 27, 110, 153, 445, 483, 543, 597, 812, 1426
Hpy188III TCNNGA 5 cut(s) 205, 494, 1079, 1202, 1242
Hpy8I GTNNAC 2 cut(s) 280, 1432
HpyAV CCTTC 6 cut(s) 130, 427, 592, 697, 706, 770
HpyCH4III ACNGT 9 cut(s) 48, 267, 275, 842, 895, 1031, 1042, 1268, 1366
HpyCH4V TGCA 9 cut(s) 4, 177, 215, 452, 457, 489, 910, 1222, 1406
HpyF10VI GCNNNNNNNGC 4 cut(s) 435, 715, 956, 1228
HpyF3I CTNAG 7 cut(s) 115, 129, 594, 720, 746, 1337, 1425
Hsp92I GRCGYC 1 cut(s) 716
Hsp92II CATG 3 cut(s) 97, 461, 1082
HspAI GCGC 1 cut(s) 716
KasI GGCGCC 1 cut(s) 715
Kpn2I TCCGGA 1 cut(s) 493
Ksp22I TGATCA 1 cut(s) 792
Kzo9I GATC 4 cut(s) 538, 742, 792, 856
LmnI GCTCC 2 cut(s) 361, 947
Lsp1109I GCAGC 2 cut(s) 184, 213
LweI GCATC 6 cut(s) 631, 789, 1218, 1300, 1323, 1394
MaeIII GTNAC 3 cut(s) 506, 836, 1397
MalI GATC 4 cut(s) 540, 744, 794, 858
MboI GATC 4 cut(s) 538, 742, 792, 856
MhlI GDGCHC 2 cut(s) 389, 1424
MluCI AATT 4 cut(s) 61, 406, 681, 757
Mly113I GGCGCC 1 cut(s) 716
MlyI GAGTC 3 cut(s) 158, 176, 335
MmeI TCCRAC 2 cut(s) 1061, 1305
MroI TCCGGA 1 cut(s) 493
MroXI GAANNNNTTC 2 cut(s) 32, 1049
MseI TTAA 4 cut(s) 17, 147, 252, 698
MslI CAYNNNNRTG 3 cut(s) 131, 369, 1390
MspI CCGG 5 cut(s) 80, 222, 494, 511, 1438
MspR9I CCNGG 2 cut(s) 223, 305
Mva1269I GAATGC 2 cut(s) 102, 179
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 4 cut(s) 435, 715, 956, 1228
NarI GGCGCC 1 cut(s) 716
NciI CCSGG 1 cut(s) 223
NdeII GATC 4 cut(s) 538, 742, 792, 856
NlaIII CATG 3 cut(s) 97, 461, 1082
NlaIV GGNNCC 1 cut(s) 717
NotI GCGGCCGC 1 cut(s) 957
NspI RCATGY 1 cut(s) 461
PagI TCATGA 1 cut(s) 1078
PaqCI CACCTGC 1 cut(s) 1120
PceI AGGCCT 1 cut(s) 1071
PctI GAATGC 2 cut(s) 102, 179
PdmI GAANNNNTTC 2 cut(s) 32, 1049
PfeI GAWTC 2 cut(s) 123, 630
PflFI GACNNNGTC 1 cut(s) 289
PflMI CCANNNNNTGG 1 cut(s) 472
PkrI GCNGC 4 cut(s) 199, 228, 958, 961
PleI GAGTC 3 cut(s) 158, 176, 334
PluTI GGCGCC 1 cut(s) 719
PpsI GAGTC 3 cut(s) 158, 176, 334
PshAI GACNNNNGTC 1 cut(s) 345
PshBI ATTAAT 1 cut(s) 147
Psp124BI GAGCTC 1 cut(s) 389
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 717
PspPI GGNCC 2 cut(s) 77, 436
PsyI GACNNNGTC 1 cut(s) 289
RsaI GTAC 2 cut(s) 56, 897
RsaNI GTAC 2 cut(s) 55, 896
RseI CAYNNNNRTG 3 cut(s) 131, 369, 1390
SacI GAGCTC 1 cut(s) 389
SaqAI TTAA 4 cut(s) 17, 147, 252, 698
SatI GCNGC 4 cut(s) 198, 227, 957, 960
Sau3AI GATC 4 cut(s) 538, 742, 792, 856
Sau96I GGNCC 2 cut(s) 77, 436
ScaI AGTACT 1 cut(s) 897
SchI GAGTC 3 cut(s) 158, 176, 335
ScrFI CCNGG 2 cut(s) 223, 305
SduI GDGCHC 2 cut(s) 389, 1424
SfaNI GCATC 6 cut(s) 631, 789, 1218, 1300, 1323, 1394
SfoI GGCGCC 1 cut(s) 717
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 3 cut(s) 131, 369, 1390
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
Sse9I AATT 4 cut(s) 61, 406, 681, 757
SseBI AGGCCT 1 cut(s) 1071
SsiI CCGC 3 cut(s) 67, 956, 960
SspDI GGCGCC 1 cut(s) 715
SspI AATATT 2 cut(s) 33, 1411
SstI GAGCTC 1 cut(s) 389
StuI AGGCCT 1 cut(s) 1071
StyD4I CCNGG 2 cut(s) 221, 303
TaaI ACNGT 9 cut(s) 48, 267, 275, 842, 895, 1031, 1042, 1268, 1366
TaqI TCGA 3 cut(s) 855, 882, 1213
TaqII GACCGA 1 cut(s) 387
TasI AATT 4 cut(s) 61, 406, 681, 757
TatI WGTACW 1 cut(s) 895
TauI GCSGC 2 cut(s) 959, 962
TfiI GAWTC 2 cut(s) 123, 630
Tru1I TTAA 4 cut(s) 17, 147, 252, 698
Tru9I TTAA 4 cut(s) 17, 147, 252, 698
TscAI CASTG 5 cut(s) 43, 133, 246, 847, 999
TseI GCWGC 2 cut(s) 197, 226
TspDTI ATGAA 3 cut(s) 149, 170, 1095
TspRI CASTG 5 cut(s) 43, 133, 246, 847, 999
Tth111I GACNNNGTC 1 cut(s) 289
Van91I CCANNNNNTGG 1 cut(s) 472
VpaK11BI GGWCC 1 cut(s) 77
VspI ATTAAT 1 cut(s) 147
XapI RAATTY 2 cut(s) 406, 681
XceI RCATGY 1 cut(s) 461
XmiI GTMKAC 1 cut(s) 1431
XmnI GAANNNNTTC 2 cut(s) 32, 1049
ZrmI AGTACT 1 cut(s) 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.