Prupe.2G218600_v2.0.a1

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014205
Physical Location & Seq
Forward (+)
24796372 .. 24796938
567 bp
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UTR
Exon/CDS
Intron
Prupe.2G218600.1

Sequence Viewer

Length: 333 bp
ATGAGTGCTGAAGCTTTGCAAGTTGCTAAGGTGTACCGCCACCTTCTCAGAGCTGTGAAGAAACACGTTGCCAAAGAAGACAGGGCGAGGCATTTCAAAGAATACGTAACTGAAGAATTCAGGAACAACTGCAAACTGTCAGATCCATCTTCCATTCAGCAGAAGATTAAGCTTGCCCATAACTACACTTTTCTTCTTAACAGTGTGCACCATCACCAGGACCTATTGTTCTCTTACAACATTGCTGTGGATAGATCAGATGAGATGAAAAAAGTACTTGGAAAATCTGCTGCAAGTGTTGGTCTTCAACTTCCTGAGGTTTATCAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR Complex1_LYR_2

Protein Analysis

111

Amino Acids

12.7

Weight (kDa)

9.41

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51960 AT5G51960
fragaria_vesca FvH4_7g20160
malus_domestica MD01G1131200.v1.1 MD07G1179300.v1.1
prunus_persica Prupe.2G218600_v2.0.a1
pyrus_communis pycom07g17300
rosa_chinensis RchiOBHm_Chr1g0364121
rosa_laevigata RLG00000027514
rosa_multiflora Rmu_sc0000071.1_g000018
rosa_roxburghii Rroxscaffold_4G00292620
rosa_rugosa Rorug01G0313700
rosa_samantha Rh1AG321200 Rh1BG284400 Rh1CG300800 Rh1DG315800
rosa_wichuraiana Rw1G028480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 37
AclWI GGATC 1 cut(s) 137
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 2 cut(s) 30, 132
AfaI GTAC 2 cut(s) 35, 276
AfiI CCNNNNNNNGG 1 cut(s) 217
AflIII ACRYGT 1 cut(s) 64
AgsI TTSAA 2 cut(s) 97, 308
AjnI CCWGG 1 cut(s) 216
AloI GAACNNNNNNTCC 2 cut(s) 212, 244
AluBI AGCT 3 cut(s) 14, 53, 172
AluI AGCT 3 cut(s) 14, 53, 172
Alw21I GWGCWC 1 cut(s) 210
Alw44I GTGCAC 1 cut(s) 206
AlwI GGATC 1 cut(s) 137
ApaLI GTGCAC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 1 cut(s) 220
AxyI CCTNAGG 1 cut(s) 315
BaeGI GKGCMC 1 cut(s) 210
BbsI GAAGAC 2 cut(s) 84, 296
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 277
BccI CCATC 2 cut(s) 154, 219
BciT130I CCWGG 1 cut(s) 218
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
BmcAI AGTACT 1 cut(s) 276
Bme1390I CCNGG 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 218
BpiI GAAGAC 2 cut(s) 84, 296
Bpu10I CCTNAGC 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse21I CCTNAGG 1 cut(s) 315
Bse3DI GCAATG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 218
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 2 cut(s) 61, 306
BseSI GKGCMC 1 cut(s) 210
BseXI GCAGC 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 2 cut(s) 142, 254
BspACI CCGC 1 cut(s) 37
BspCNI CTCAG 2 cut(s) 60, 307
BspPI GGATC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 240
BssMI GATC 2 cut(s) 142, 254
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 2 cut(s) 138, 203
BstBAI YACGTR 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 3 cut(s) 27, 47, 315
BstKTI GATC 2 cut(s) 145, 257
BstMBI GATC 2 cut(s) 142, 254
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 216
BstSLI GKGCMC 1 cut(s) 210
BstSNI TACGTA 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 277
BstV2I GAAGAC 2 cut(s) 84, 296
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
Bsu36I CCTNAGG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 220
Csp6I GTAC 2 cut(s) 34, 275
CviJI RGCY 4 cut(s) 14, 53, 172, 328
CviKI_1 RGCY 4 cut(s) 14, 53, 172, 328
CviQI GTAC 2 cut(s) 34, 275
DdeI CTNAG 3 cut(s) 27, 47, 315
DpnI GATC 2 cut(s) 144, 256
DpnII GATC 2 cut(s) 142, 254
Eco105I TACGTA 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 220
Eco57I CTGAAG 2 cut(s) 30, 132
Eco81I CCTNAGG 1 cut(s) 315
EcoO109I RGGNCCY 1 cut(s) 220
EcoRI GAATTC 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 216
FaiI YATR 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 291
Fsp4HI GCNGC 1 cut(s) 291
GluI GCNGC 1 cut(s) 291
HindIII AAGCTT 2 cut(s) 12, 170
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 2 cut(s) 34, 208
Hpy188I TCNGA 3 cut(s) 50, 142, 259
Hpy188III TCNNGA 2 cut(s) 121, 314
Hpy8I GTNNAC 2 cut(s) 34, 208
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 2 cut(s) 138, 203
HpyCH4IV ACGT 2 cut(s) 66, 105
HpyCH4V TGCA 4 cut(s) 19, 132, 208, 293
HpyF3I CTNAG 3 cut(s) 27, 47, 315
HpySE526I ACGT 2 cut(s) 66, 105
Kzo9I GATC 2 cut(s) 142, 254
LpnPI CCDG 5 cut(s) 67, 106, 203, 230, 327
Lsp1109I GCAGC 1 cut(s) 277
MaeII ACGT 2 cut(s) 66, 105
MaeIII GTNAC 1 cut(s) 106
MalI GATC 2 cut(s) 144, 256
MboI GATC 2 cut(s) 142, 254
MboII GAAGA 7 cut(s) 70, 89, 125, 141, 175, 185, 296
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 1 cut(s) 116
MnlI CCTC 2 cut(s) 81, 310
MseI TTAA 2 cut(s) 168, 198
MslI CAYNNNNRTG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 218
NdeII GATC 2 cut(s) 142, 254
PkrI GCNGC 1 cut(s) 292
Ppu21I YACGTR 1 cut(s) 106
PpuMI RGGWCCY 1 cut(s) 220
Psp5II RGGWCCY 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspPI GGNCC 1 cut(s) 220
PspPPI RGGWCCY 1 cut(s) 220
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 2 cut(s) 35, 276
RsaNI GTAC 2 cut(s) 34, 275
RseI CAYNNNNRTG 1 cut(s) 245
SaqAI TTAA 2 cut(s) 168, 198
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 2 cut(s) 142, 254
Sau96I GGNCC 1 cut(s) 220
ScaI AGTACT 1 cut(s) 276
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 210
SetI ASST 9 cut(s) 16, 33, 45, 55, 69, 108, 174, 225, 321
SinI GGWCC 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 245
SnaBI TACGTA 1 cut(s) 106
Sse9I AATT 1 cut(s) 116
SsiI CCGC 1 cut(s) 37
StyD4I CCNGG 1 cut(s) 216
TaaI ACNGT 2 cut(s) 138, 203
TaiI ACGT 2 cut(s) 69, 108
TasI AATT 1 cut(s) 116
TatI WGTACW 1 cut(s) 274
Tru1I TTAA 2 cut(s) 168, 198
Tru9I TTAA 2 cut(s) 168, 198
TscAI CASTG 1 cut(s) 208
TseI GCWGC 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 281
TspRI CASTG 1 cut(s) 208
VneI GTGCAC 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 1 cut(s) 116
ZrmI AGTACT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.