Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016507

Physical Location & Seq

Genomic Coordinates Forward (+)

21603569 .. 21604414

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGCGTCCCTGAAATTTCCGTTGGAGATTCTCGCCGTCTTCGTCATCATCTCCGTGATTCTTTTGCCGATTGCTCAATCTCATTCTTCTTCGCCAGCTCCCGCACCCACCAGCGATGGAACATCGATAGATCAGGGGATAGCGTATGTTCTAATGATGGTGGCTTTGGCGTTGACTTATTTCATTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AGP

Protein Analysis

63

Amino Acids

6.67

Weight (kDa)

5.2

Isoelectric Point (pI)

56.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AGP	PF06376	31 - 63	1.5e-18	Arabinogalactan peptide

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53250
fragaria_vesca	FvH4_7g15910 FvH4_7g15910
malus_domestica	MD01G1076000.v1.1 MD07G1144900.v1.1
prunus_persica	Prupe.2G183500_v2.0.a1
pyrus_communis	pycom01g10490
rosa_chinensis	RchiOBHm_Chr1g0358781
rosa_multiflora	Rmu_sc0017529.1_g000002 Rmu_sc0031713.1_g000001
rosa_rugosa	Rorug01G0265200
rosa_samantha	Rh1CG263200 Rh1DG274200
rosa_wichuraiana	Rw1G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	14
AcyI	GRCGYC	1 cut(s)	5
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	31
BccI	CCATC	2 cut(s)	110, 151
BceAI	ACGGC	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	31
Bsa29I	ATCGAT	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	5
BseCI	ATCGAT	1 cut(s)	125
BshVI	ATCGAT	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	1 cut(s)	102
BspDI	ATCGAT	1 cut(s)	125
BssMI	GATC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	31
Bsu15I	ATCGAT	1 cut(s)	125
BsuTUI	ATCGAT	1 cut(s)	125
BtgZI	GCGATG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	96
ClaI	ATCGAT	1 cut(s)	125
CviJI	RGCY	2 cut(s)	98, 164
CviKI_1	RGCY	2 cut(s)	98, 164
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
FaiI	YATR	1 cut(s)	147
FauI	CCCGC	1 cut(s)	109
Hin1I	GRCGYC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	2 cut(s)	28, 58
Hpy166II	GTNNAC	1 cut(s)	174
Hpy8I	GTNNAC	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	4 cut(s)	23, 108, 119, 124
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	3 cut(s)	31, 78, 81
MluCI	AATT	1 cut(s)	14
MslI	CAYNNNNRTG	1 cut(s)	53
NdeII	GATC	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	28, 58
RseI	CAYNNNNRTG	1 cut(s)	53
Sau3AI	GATC	1 cut(s)	130
SetI	ASST	1 cut(s)	100
SgeI	CNNG	7 cut(s)	22, 44, 67, 107, 113, 123, 146
SmiMI	CAYNNNNRTG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	14
SsiI	CCGC	1 cut(s)	102
TaqI	TCGA	1 cut(s)	125
TasI	AATT	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	28, 58
TspDTI	ATGAA	2 cut(s)	172, 176
TspGWI	ACGGA	2 cut(s)	9, 43
XapI	RAATTY	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.