MD01G1076000.v1.1

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0016507
Physical Location & Seq
Reverse (-)
18196495 .. 18197338
844 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1076000.v1.1.491

Sequence Viewer

Length: 291 bp
ATGGCGCTTTGCTTCGGATTTTCTAAAGCATTTTTTAGAGTTGTTCTAGTCTCTGCAATTGTCTTGTTCGCCCTTCTATCCCCATCTGCTGCTGCCACGCCCAAGCCCTCAGCTGCTGCTGCAACTCCTTCCTCCGCCCCTTCTCCCACCGCCGCCGCCCCTGCCCCTGGCCCTTCCAGTGATGGAACTTCAATAGACCAAGGGATTGCATATGTGCTGATGCTAGTGGCTCTGGTGCTGACATATCTCATTCATCCTATGGACGCATCATCATCCTACAATTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

97

Amino Acids

9.72

Weight (kDa)

6.5

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 53 - 85 1.4e-16 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53250
fragaria_vesca FvH4_7g15910 FvH4_7g15910
malus_domestica MD01G1076000.v1.1 MD07G1144900.v1.1
prunus_persica Prupe.2G183500_v2.0.a1
pyrus_communis pycom01g10490
rosa_chinensis RchiOBHm_Chr1g0358781
rosa_multiflora Rmu_sc0017529.1_g000002 Rmu_sc0031713.1_g000001
rosa_rugosa Rorug01G0265200
rosa_samantha Rh1CG263200 Rh1DG274200
rosa_wichuraiana Rw1G024820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 135, 150, 153, 156
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 1 cut(s) 192
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 55
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 5 cut(s) 89, 92, 113, 116, 119
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 170
BbvCI CCTCAGC 1 cut(s) 109
BbvI GCAGC 5 cut(s) 76, 79, 100, 103, 106
BccI CCATC 2 cut(s) 91, 176
BciT130I CCWGG 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 2 cut(s) 47, 224
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 7 cut(s) 90, 93, 114, 117, 120, 153, 156
BlsI GCNGC 7 cut(s) 91, 94, 115, 118, 121, 154, 157
Bme1390I CCNGG 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 2 cut(s) 210, 275
Bpu10I CCTNAGC 1 cut(s) 109
BsaJI CCNNGG 2 cut(s) 166, 199
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 166, 199
BseGI GGATG 2 cut(s) 253, 272
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 177
BseXI GCAGC 5 cut(s) 76, 79, 100, 103, 106
BshFI GGCC 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 55
BsnI GGCC 1 cut(s) 171
BspACI CCGC 4 cut(s) 135, 150, 153, 156
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 1 cut(s) 122
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 166, 199
BssT1I CCWWGG 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 109
BstF5I GGATG 2 cut(s) 253, 272
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 119, 161
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstV1I GCAGC 5 cut(s) 76, 79, 100, 103, 106
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 2 cut(s) 253, 272
BtsIMutI CAGTG 1 cut(s) 184
CaiI CAGNNNCTG 1 cut(s) 116
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 170
CseI GACGC 1 cut(s) 272
CviJI RGCY 4 cut(s) 106, 113, 171, 230
CviKI_1 RGCY 4 cut(s) 106, 113, 171, 230
DdeI CTNAG 1 cut(s) 109
EciI GGCGGA 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 199
FaiI YATR 4 cut(s) 211, 213, 244, 260
FauNDI CATATG 1 cut(s) 211
Fnu4HI GCNGC 7 cut(s) 90, 93, 114, 117, 120, 153, 156
FokI GGATG 2 cut(s) 240, 259
Fsp4HI GCNGC 7 cut(s) 90, 93, 114, 117, 120, 153, 156
FspBI CTAG 2 cut(s) 47, 224
GlaI GCGC 1 cut(s) 6
GluI GCNGC 7 cut(s) 90, 93, 114, 117, 120, 153, 156
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 171
HgaI GACGC 1 cut(s) 272
HhaI GCGC 1 cut(s) 7
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
Hpy188I TCNGA 1 cut(s) 17
HpyAV CCTTC 4 cut(s) 83, 138, 150, 183
HpyCH4V TGCA 3 cut(s) 56, 122, 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 161
HpyF3I CTNAG 1 cut(s) 109
HspAI GCGC 1 cut(s) 5
LpnPI CCDG 5 cut(s) 153, 174, 180, 190, 218
Lsp1109I GCAGC 5 cut(s) 76, 79, 100, 103, 106
LweI GCATC 2 cut(s) 210, 275
MaeI CTAG 2 cut(s) 47, 224
MfeI CAATTG 1 cut(s) 57
MluCI AATT 2 cut(s) 57, 280
MnlI CCTC 2 cut(s) 118, 142
MspA1I CMGCKG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 119, 161
NdeI CATATG 1 cut(s) 211
PkrI GCNGC 7 cut(s) 91, 94, 115, 118, 121, 154, 157
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspPI GGNCC 1 cut(s) 170
PstNI CAGNNNCTG 1 cut(s) 116
PvuII CAGCTG 1 cut(s) 113
SatI GCNGC 7 cut(s) 90, 93, 114, 117, 120, 153, 156
Sau96I GGNCC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 168
SetI ASST 1 cut(s) 115
SfaNI GCATC 2 cut(s) 210, 275
Sse9I AATT 2 cut(s) 57, 280
SsiI CCGC 4 cut(s) 135, 150, 153, 156
SspMI CTAG 2 cut(s) 47, 224
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 1 cut(s) 199
TasI AATT 2 cut(s) 57, 280
TauI GCSGC 2 cut(s) 155, 158
TscAI CASTG 1 cut(s) 184
TseI GCWGC 5 cut(s) 89, 92, 113, 116, 119
TspDTI ATGAA 1 cut(s) 242
TspRI CASTG 1 cut(s) 184
XspI CTAG 2 cut(s) 47, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.