FvH4_7g15910

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016507
Physical Location & Seq
Reverse (-)
13714077 .. 13715316
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15910.t1

Sequence Viewer

Length: 258 bp
ATGGCAGCTTGCTTCGGATTCTCCAAGGCCATTTTCCGAGTCCTGGCAGTGTTGGCACTCCTCTTCATTGCTTCAGCCTCTGCCTCAAAGGCTCCTGCTGCTTCACCTCTTGCTGCTCATGCTCCTGCTCCTGCTCCTGCTCCCATTAGTGATGGGATTTCAATAGATCAGGGGATTGCTTATGTGCTGATGCTGGTGGCTTTGGTGCTCACTTACCTCATTCATCCTTTGGATGCATCATCCTACAATTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

86

Amino Acids

8.72

Weight (kDa)

6.69

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 41 - 75 9e-18 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53250
fragaria_vesca FvH4_7g15910 FvH4_7g15910
malus_domestica MD01G1076000.v1.1 MD07G1144900.v1.1
prunus_persica Prupe.2G183500_v2.0.a1
pyrus_communis pycom01g10490
rosa_chinensis RchiOBHm_Chr1g0358781
rosa_multiflora Rmu_sc0017529.1_g000002 Rmu_sc0031713.1_g000001
rosa_rugosa Rorug01G0265200
rosa_samantha Rh1CG263200 Rh1DG274200
rosa_wichuraiana Rw1G024820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 1 cut(s) 162
AjnI CCWGG 1 cut(s) 42
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw21I GWGCWC 1 cut(s) 210
AlwNI CAGNNNCTG 1 cut(s) 80
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 3 cut(s) 5, 98, 113
AsuHPI GGTGA 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 3 cut(s) 17, 85, 100
BccI CCATC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 44
BglI GCCNNNNNGGC 1 cut(s) 89
BisI GCNGC 3 cut(s) 6, 99, 114
BlsI GCNGC 3 cut(s) 7, 100, 115
Bme1390I CCNGG 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 44
BmsI GCATC 3 cut(s) 180, 223, 245
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 3 cut(s) 223, 238, 239
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 3 cut(s) 17, 85, 100
BshFI GGCC 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 43
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 166
BspANI GGCC 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 10
BstF5I GGATG 3 cut(s) 223, 238, 239
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 4 cut(s) 53, 89, 98, 119
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BstV1I GCAGC 3 cut(s) 17, 85, 100
BsuRI GGCC 1 cut(s) 29
BtsCI GGATG 3 cut(s) 223, 238, 239
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 80
CviAII CATG 1 cut(s) 119
CviJI RGCY 5 cut(s) 8, 29, 77, 92, 200
CviKI_1 RGCY 5 cut(s) 8, 29, 77, 92, 200
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 1 cut(s) 122
FaiI YATR 2 cut(s) 120, 183
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 6, 99, 114
FokI GGATG 3 cut(s) 210, 226, 245
Fsp4HI GCNGC 3 cut(s) 6, 99, 114
GluI GCNGC 3 cut(s) 6, 99, 114
HaeIII GGCC 1 cut(s) 29
Hin1II CATG 1 cut(s) 122
HinfI GANTC 2 cut(s) 18, 39
HphI GGTGA 1 cut(s) 96
Hpy188I TCNGA 2 cut(s) 17, 38
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 89, 98, 119
Hsp92II CATG 1 cut(s) 122
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 5 cut(s) 97, 127, 133, 139, 145
LpnPI CCDG 8 cut(s) 29, 56, 108, 138, 144, 150, 155, 179
Lsp1109I GCAGC 3 cut(s) 17, 85, 100
LweI GCATC 3 cut(s) 180, 223, 245
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 1 cut(s) 247
MlyI GAGTC 1 cut(s) 48
MnlI CCTC 5 cut(s) 71, 88, 94, 117, 227
Mph1103I ATGCAT 1 cut(s) 238
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 4 cut(s) 53, 89, 98, 119
NdeII GATC 1 cut(s) 166
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 238
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 3 cut(s) 7, 100, 115
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 93
PstNI CAGNNNCTG 1 cut(s) 80
SatI GCNGC 3 cut(s) 6, 99, 114
Sau3AI GATC 1 cut(s) 166
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 1 cut(s) 210
SetI ASST 3 cut(s) 10, 109, 219
SfaNI GCATC 3 cut(s) 180, 223, 245
Sse9I AATT 1 cut(s) 247
StyD4I CCNGG 1 cut(s) 42
StyI CCWWGG 1 cut(s) 24
TasI AATT 1 cut(s) 247
TfiI GAWTC 1 cut(s) 18
TscAI CASTG 1 cut(s) 54
TseI GCWGC 3 cut(s) 5, 98, 113
TspDTI ATGAA 2 cut(s) 55, 212
TspRI CASTG 1 cut(s) 54
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.