Rorug01G0265200

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016507
Physical Location & Seq
Reverse (-)
37721034 .. 37721505
472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0265200.1

Sequence Viewer

Length: 402 bp
ATGGGAAAATGCAGCATGCTTTTCTTCCCAATTACCCATAATGAAGAATTTCACCACACGCTCTTGGTCTTTGACAAGGACATACCGCAATGGCTGCATTTTGATTCAATGAAACCAAGAAGAGCAGGAACAGGGGAGTGCTTTAAAAGTATAAAAAAATTGGTTGAAATGGTCGAGCTGTGGATGAGAGCAGTGAAAGATCAAGCAGATGATATGCTGCAGCAAGGCTGCCGAATGAAATTTGACAAGAGTCAAAGCACTCACACAAAATTAAAGATGGTTGAAAGTATACTGAGCGATGACGAAATAAGAACAATAAGCTGGATAAAGGAAAATTATGATGGTGGAAGGATCCCTTTGAACCATGCCAGAATCTGCCCCCAACAAGACCAAGGATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

133

Amino Acids

15.56

Weight (kDa)

7.0

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53250
fragaria_vesca FvH4_7g15910 FvH4_7g15910
malus_domestica MD01G1076000.v1.1 MD07G1144900.v1.1
prunus_persica Prupe.2G183500_v2.0.a1
pyrus_communis pycom01g10490
rosa_chinensis RchiOBHm_Chr1g0358781
rosa_multiflora Rmu_sc0017529.1_g000002 Rmu_sc0031713.1_g000001
rosa_rugosa Rorug01G0265200
rosa_samantha Rh1CG263200 Rh1DG274200
rosa_wichuraiana Rw1G024820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 289
AciI CCGC 1 cut(s) 86
AclWI GGATC 2 cut(s) 346, 359
AcsI RAATTY 2 cut(s) 47, 239
AgsI TTSAA 4 cut(s) 108, 167, 284, 361
AluBI AGCT 2 cut(s) 178, 321
AluI AGCT 2 cut(s) 178, 321
AlwI GGATC 2 cut(s) 346, 359
AlwNI CAGNNNCTG 1 cut(s) 375
ApeKI GCWGC 5 cut(s) 12, 94, 217, 220, 228
ApoI RAATTY 2 cut(s) 47, 239
Asp700I GAANNNNTTC 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 44
BamHI GGATCC 1 cut(s) 351
BbvI GCAGC 5 cut(s) 24, 81, 204, 215, 232
BccI CCATC 2 cut(s) 271, 335
BfmI CTRYAG 1 cut(s) 218
BisI GCNGC 5 cut(s) 13, 95, 218, 221, 229
BlsI GCNGC 5 cut(s) 14, 96, 219, 222, 230
BmiI GGNNCC 1 cut(s) 353
BoxI GACNNNNGTC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 391
Bse3DI GCAATG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 391
BseGI GGATG 1 cut(s) 189
BseMI GCAATG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 284
BseXI GCAGC 5 cut(s) 24, 81, 204, 215, 232
Bsp143I GATC 3 cut(s) 199, 351, 395
BspACI CCGC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 353
BspMAI CTGCAG 1 cut(s) 222
BspPI GGATC 2 cut(s) 346, 359
BspQI GCTCTTC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 391
BssMI GATC 3 cut(s) 199, 351, 395
BssNAI GTATAC 1 cut(s) 290
BssT1I CCWWGG 1 cut(s) 391
Bst1107I GTATAC 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 115
BstAPI GCANNNNNTGC 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 1 cut(s) 293
BstF5I GGATG 1 cut(s) 189
BstKTI GATC 3 cut(s) 202, 354, 398
BstMBI GATC 3 cut(s) 199, 351, 395
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstNSI RCATGY 1 cut(s) 19
BstPAI GACNNNNGTC 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 218
BstV1I GCAGC 5 cut(s) 24, 81, 204, 215, 232
BstX2I RGATCY 1 cut(s) 351
BstYI RGATCY 1 cut(s) 351
BstZ17I GTATAC 1 cut(s) 290
BtgZI GCGATG 1 cut(s) 312
BtsCI GGATG 1 cut(s) 189
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 17
CaiI CAGNNNCTG 1 cut(s) 375
CviAII CATG 2 cut(s) 16, 365
CviJI RGCY 4 cut(s) 94, 178, 228, 321
CviKI_1 RGCY 4 cut(s) 94, 178, 228, 321
DdeI CTNAG 1 cut(s) 293
DpnI GATC 3 cut(s) 201, 353, 397
DpnII GATC 3 cut(s) 199, 351, 395
DraI TTTAAA 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 391
FaeI CATG 2 cut(s) 19, 368
FaiI YATR 8 cut(s) 17, 39, 83, 152, 215, 290, 339, 366
FalI AAGNNNNNCTT 2 cut(s) 340, 372
FatI CATG 2 cut(s) 15, 364
FblI GTMKAC 1 cut(s) 289
Fnu4HI GCNGC 5 cut(s) 13, 95, 218, 221, 229
FokI GGATG 1 cut(s) 196
Fsp4HI GCNGC 5 cut(s) 13, 95, 218, 221, 229
GluI GCNGC 5 cut(s) 13, 95, 218, 221, 229
Hin1II CATG 2 cut(s) 19, 368
HinfI GANTC 3 cut(s) 104, 250, 372
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 290
Hpy8I GTNNAC 1 cut(s) 290
HpyAV CCTTC 1 cut(s) 342
HpyCH4V TGCA 3 cut(s) 12, 97, 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpyF3I CTNAG 1 cut(s) 293
Hsp92II CATG 2 cut(s) 19, 368
Kzo9I GATC 3 cut(s) 199, 351, 395
LguI GCTCTTC 1 cut(s) 115
LpnPI CCDG 4 cut(s) 111, 117, 307, 382
Lsp1109I GCAGC 5 cut(s) 24, 81, 204, 215, 232
MalI GATC 3 cut(s) 201, 353, 397
MboI GATC 3 cut(s) 199, 351, 395
MboII GAAGA 3 cut(s) 16, 56, 132
MflI RGATCY 1 cut(s) 351
MluCI AATT 6 cut(s) 30, 47, 158, 239, 269, 334
MlyI GAGTC 1 cut(s) 259
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 2 cut(s) 144, 272
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeII GATC 3 cut(s) 199, 351, 395
NlaIII CATG 2 cut(s) 19, 368
NlaIV GGNNCC 1 cut(s) 353
NspI RCATGY 1 cut(s) 19
PaeI GCATGC 1 cut(s) 19
PciSI GCTCTTC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 2 cut(s) 104, 372
PkrI GCNGC 5 cut(s) 14, 96, 219, 222, 230
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
PshAI GACNNNNGTC 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 353
PstI CTGCAG 1 cut(s) 222
PstNI CAGNNNCTG 1 cut(s) 375
PsuI RGATCY 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 115
SaqAI TTAA 2 cut(s) 144, 272
SatI GCNGC 5 cut(s) 13, 95, 218, 221, 229
Sau3AI GATC 3 cut(s) 199, 351, 395
SchI GAGTC 1 cut(s) 259
SetI ASST 2 cut(s) 180, 323
SfcI CTRYAG 1 cut(s) 218
SphI GCATGC 1 cut(s) 19
Sse9I AATT 6 cut(s) 30, 47, 158, 239, 269, 334
SsiI CCGC 1 cut(s) 86
StyI CCWWGG 1 cut(s) 391
TaqI TCGA 1 cut(s) 174
TasI AATT 6 cut(s) 30, 47, 158, 239, 269, 334
TfiI GAWTC 2 cut(s) 104, 372
Tru1I TTAA 2 cut(s) 144, 272
Tru9I TTAA 2 cut(s) 144, 272
TscAI CASTG 1 cut(s) 198
TseI GCWGC 5 cut(s) 12, 94, 217, 220, 228
TspDTI ATGAA 3 cut(s) 57, 125, 251
TspRI CASTG 1 cut(s) 198
XapI RAATTY 2 cut(s) 47, 239
XceI RCATGY 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 289
XmnI GAANNNNTTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.