Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011214

Physical Location & Seq

Genomic Coordinates Forward (+)

21794177 .. 21796092

Gene Structure 1916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGACTTTCTCAAAGTTTCAGACAAGACAACAATTCCATATAGAAGTGATTCTTTGTTTAGTTTGAATCAGCAACAATACAAAGAGTCTTCTTTTGGATTCAGAGACATGGAGATTCATCCGCATCCTACTCCATATGCAGGAAATGGACTTTTGGGTTGTTATTACTATTACCCTTTCACAAACGCACAATTGAAGGAGCTTGAGAGACAAGCAATGATCTACAAGTACATGATCGCATCTATTCCTGTTCCTTTCGATCTACTTGTTTCTTCACCATCCTCTGCCTCTCCTTGTAACAATAAAAACATCGCCGGAGATTTAGAGCCGGGAAGATGCCGGAGAACAGACGGAAAGAAATGGAGATGCGCGAAAGAAGTCGTCTCTAATCACAAATACTGTGAGAAACACTTACACAGAGGTCGTCCTCGTTCAAGAAAGCATGTGGAACCTCCTTATTCTCGCCCTAACAACAATGGTGGTTCTGTGAAAAACAGAGATCTCAAAAAGCTTCCTCAAAAGTTATCTAGTAGTTCCATCAAAGACAAAACACTTGAGCCAATGGAGGTTTCATCATCAATCTCAAACTATAGAGACTCCAGAGGAAGTGAGAAATTTACTGTATTGGCAACAACAGAGCAAGAGAACAAGTATCTGAATTTCATAGATGTATGGTCCGATGGAGTAAGATCATCTGAAAAACAGAGTACAACTTCAACACCTGTTTCTTCTTCCAATGGCAATCTCTCTCTTTACTCGCTTGATCTCTCAATGGGAGGAAACAACTTAATGGGCCAAGACGAAATGGGCCTGATACAAATGGGCTTAGGTGTAATCGGGTCGGGTAGTGAGGATCATCACGGGTATGGTCCTTATGGTGTGACTTCTTCACTAGAGGAGATGTCAAGCTGGCTTGCTCCGATGTCTACCACACCTGGTGGACCATTAGCGGAGATACTGAGGCCGAGTACGAATTTGGCGATCTCTGGTGATATCGAATCGTATAGCTTGATGGAGACTCCCACTCCAAGCTCGTCCCCGTCTAGAGTGATGAAGAAGATGACTAGTTCAGTGTCCGACGAAAGCAGCCAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0080167 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

365

Amino Acids

40.41

Weight (kDa)

8.13

Isoelectric Point (pI)

56.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	59 - 89	1.8e-11	QLQ
WRC	PF08879	109 - 150	1.7e-19	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53660
fragaria_vesca	FvH4_7g32780 FvH4_7g32780 FvH4_7g32780
malus_domestica	MD07G1297800.v1.1
prunus_persica	Prupe.2G317500_v2.0.a1 Prupe.2G317500_v2.0.a1 Prupe.2G317500_v2.0.a1 Prupe.2G317500_v2.0.a1
pyrus_communis	pycom07g27020
rosa_chinensis	RchiOBHm_Chr1g0382681
rosa_laevigata	RLG00000026165
rosa_roxburghii	Rroxscaffold_4G00277950
rosa_rugosa	Rorug01G0435400
rosa_samantha	Rh1AG460600 Rh1BG417400 Rh1CG431000 Rh1DG449600 Rh2CG431600
rosa_wichuraiana	Rw1G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	926
AccII	CGCG	1 cut(s)	371
AciI	CCGC	2 cut(s)	122, 950
AclWI	GGATC	1 cut(s)	861
AcsI	RAATTY	3 cut(s)	614, 658, 973
AdeI	CACNNNGTG	1 cut(s)	938
AfaI	GTAC	3 cut(s)	230, 709, 970
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	4 cut(s)	67, 196, 435, 717
AhlI	ACTAGT	1 cut(s)	1064
AjnI	CCWGG	2 cut(s)	934, 1089
AjuI	GAANNNNNNNTTGG	2 cut(s)	553, 585
AluBI	AGCT	5 cut(s)	202, 511, 909, 1008, 1032
AluI	AGCT	5 cut(s)	202, 511, 909, 1008, 1032
Alw26I	GTCTC	5 cut(s)	99, 202, 388, 588, 1010
AlwI	GGATC	1 cut(s)	861
AoxI	GGCC	3 cut(s)	793, 808, 962
ApeKI	GCWGC	1 cut(s)	1086
ApoI	RAATTY	3 cut(s)	614, 658, 973
Asp700I	GAANNNNTTC	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	5 cut(s)	675, 793, 808, 869, 941
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	267, 1001
AvaII	GGWCC	3 cut(s)	675, 869, 941
BbsI	GAAGAC	1 cut(s)	81
BccI	CCATC	4 cut(s)	286, 545, 674, 1006
BciT130I	CCWGG	2 cut(s)	936, 1091
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	5 cut(s)	99, 202, 388, 588, 1010
BcuI	ACTAGT	1 cut(s)	1064
BfaI	CTAG	4 cut(s)	528, 893, 1044, 1065
BfmI	CTRYAG	1 cut(s)	589
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	1 cut(s)	1087
BlsI	GCNGC	1 cut(s)	1088
Bme1390I	CCNGG	3 cut(s)	330, 936, 1091
Bme18I	GGWCC	3 cut(s)	675, 869, 941
BmgT120I	GGNCC	5 cut(s)	675, 793, 808, 869, 941
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	3 cut(s)	330, 936, 1091
BmsI	GCATC	4 cut(s)	133, 248, 326, 356
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	583
Bpu10I	CCTNAGC	1 cut(s)	826
BpuEI	CTTGAG	2 cut(s)	224, 575
BpuMI	CCSGG	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	1009, 1039
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	936, 1091
BseGI	GGATG	3 cut(s)	118, 124, 278
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	950
BseRI	GAGGAG	1 cut(s)	911
Bsh1236I	CGCG	1 cut(s)	371
BshFI	GGCC	3 cut(s)	795, 810, 964
BsiSI	CCGG	3 cut(s)	315, 329, 340
BslFI	GGGAC	1 cut(s)	1021
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	5 cut(s)	99, 202, 388, 588, 1010
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	1021
BsnI	GGCC	3 cut(s)	795, 810, 964
Bsp143I	GATC	8 cut(s)	219, 234, 259, 499, 689, 763, 853, 981
BspACI	CCGC	2 cut(s)	122, 950
BspANI	GGCC	3 cut(s)	795, 810, 964
BspCNI	CTCAG	1 cut(s)	951
BspFNI	CGCG	1 cut(s)	371
BspLI	GGNNCC	1 cut(s)	450
BspPI	GGATC	1 cut(s)	861
BsrDI	GCAATG	1 cut(s)	222
BssMI	GATC	8 cut(s)	219, 234, 259, 499, 689, 763, 853, 981
Bst2UI	CCWGG	2 cut(s)	936, 1091
Bst4CI	ACNGT	2 cut(s)	401, 622
BstC8I	GCNNGC	2 cut(s)	911, 915
BstDEI	CTNAG	2 cut(s)	826, 959
BstF5I	GGATG	3 cut(s)	118, 124, 278
BstFNI	CGCG	1 cut(s)	371
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	8 cut(s)	222, 237, 262, 502, 692, 766, 856, 984
BstMAI	GTCTC	5 cut(s)	99, 202, 388, 588, 1010
BstMBI	GATC	8 cut(s)	219, 234, 259, 499, 689, 763, 853, 981
BstNI	CCWGG	2 cut(s)	936, 1091
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	3 cut(s)	328, 934, 1089
BstSFI	CTRYAG	1 cut(s)	589
BstUI	CGCG	1 cut(s)	371
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BsuRI	GGCC	3 cut(s)	795, 810, 964
BtgZI	GCGATG	1 cut(s)	295
BtsCI	GGATG	3 cut(s)	118, 124, 278
BtsIMutI	CAGTG	1 cut(s)	1077
Cac8I	GCNNGC	2 cut(s)	911, 915
CfoI	GCGC	1 cut(s)	371
Cfr13I	GGNCC	5 cut(s)	675, 793, 808, 869, 941
CsiI	ACCWGGT	1 cut(s)	934
Csp6I	GTAC	3 cut(s)	229, 708, 969
CspCI	CAANNNNNGTGG	2 cut(s)	460, 495
CviAII	CATG	3 cut(s)	109, 232, 443
CviQI	GTAC	3 cut(s)	229, 708, 969
DdeI	CTNAG	2 cut(s)	826, 959
DpnI	GATC	8 cut(s)	221, 236, 261, 501, 691, 765, 855, 983
DpnII	GATC	8 cut(s)	219, 234, 259, 499, 689, 763, 853, 981
DraIII	CACNNNGTG	1 cut(s)	938
Eco32I	GATATC	1 cut(s)	994
Eco47I	GGWCC	3 cut(s)	675, 869, 941
EcoRII	CCWGG	2 cut(s)	934, 1089
EcoRV	GATATC	1 cut(s)	994
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	3 cut(s)	112, 235, 446
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FaqI	GGGAC	1 cut(s)	1021
FatI	CATG	3 cut(s)	108, 231, 442
FauNDI	CATATG	1 cut(s)	136
FblI	GTMKAC	1 cut(s)	926
Fnu4HI	GCNGC	1 cut(s)	1087
FokI	GGATG	3 cut(s)	105, 111, 265
Fsp4HI	GCNGC	1 cut(s)	1087
FspBI	CTAG	4 cut(s)	528, 893, 1044, 1065
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	1 cut(s)	1087
GsuI	CTGGAG	1 cut(s)	583
HaeIII	GGCC	3 cut(s)	795, 810, 964
HapII	CCGG	3 cut(s)	315, 329, 340
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	3 cut(s)	112, 235, 446
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	8 cut(s)	50, 67, 86, 99, 115, 596, 998, 1018
HpaII	CCGG	3 cut(s)	315, 329, 340
HphI	GGTGA	2 cut(s)	267, 1001
Hpy166II	GTNNAC	2 cut(s)	927, 941
Hpy188I	TCNGA	7 cut(s)	22, 104, 657, 679, 697, 921, 1078
Hpy188III	TCNNGA	3 cut(s)	435, 600, 1044
Hpy8I	GTNNAC	2 cut(s)	927, 941
Hpy99I	CGWCG	1 cut(s)	1082
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	2 cut(s)	401, 622
HpyCH4V	TGCA	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	826, 959
Hsp92II	CATG	3 cut(s)	112, 235, 446
HspAI	GCGC	1 cut(s)	369
Kzo9I	GATC	8 cut(s)	219, 234, 259, 499, 689, 763, 853, 981
LmnI	GCTCC	2 cut(s)	199, 922
LweI	GCATC	4 cut(s)	133, 248, 326, 356
MabI	ACCWGGT	1 cut(s)	934
MaeI	CTAG	4 cut(s)	528, 893, 1044, 1065
MaeIII	GTNAC	2 cut(s)	296, 880
MalI	GATC	8 cut(s)	221, 236, 261, 501, 691, 765, 855, 983
MboI	GATC	8 cut(s)	219, 234, 259, 499, 689, 763, 853, 981
MboII	GAAGA	8 cut(s)	81, 264, 345, 720, 723, 879, 1066, 1069
MfeI	CAATTG	1 cut(s)	191
MflI	RGATCY	1 cut(s)	499
MluCI	AATT	5 cut(s)	33, 191, 614, 658, 973
MlyI	GAGTC	3 cut(s)	95, 590, 1012
MroXI	GAANNNNTTC	1 cut(s)	49
MseI	TTAA	1 cut(s)	788
MslI	CAYNNNNRTG	1 cut(s)	864
MspI	CCGG	3 cut(s)	315, 329, 340
MspR9I	CCNGG	3 cut(s)	330, 936, 1091
MunI	CAATTG	1 cut(s)	191
MvaI	CCWGG	2 cut(s)	936, 1091
MvnI	CGCG	1 cut(s)	371
NciI	CCSGG	1 cut(s)	330
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	8 cut(s)	219, 234, 259, 499, 689, 763, 853, 981
NlaIII	CATG	3 cut(s)	112, 235, 446
NlaIV	GGNNCC	1 cut(s)	450
NmeAIII	GCCGAG	1 cut(s)	990
NmuCI	GTSAC	1 cut(s)	880
NspI	RCATGY	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	977
PdmI	GAANNNNTTC	1 cut(s)	49
PfeI	GAWTC	5 cut(s)	50, 67, 99, 115, 998
PkrI	GCNGC	1 cut(s)	1088
PleI	GAGTC	3 cut(s)	94, 590, 1012
PpsI	GAGTC	3 cut(s)	94, 590, 1012
Psp6I	CCWGG	2 cut(s)	934, 1089
PspGI	CCWGG	2 cut(s)	934, 1089
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	5 cut(s)	675, 793, 808, 869, 941
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	3 cut(s)	230, 709, 970
RsaNI	GTAC	3 cut(s)	229, 708, 969
RseI	CAYNNNNRTG	1 cut(s)	864
SaqAI	TTAA	1 cut(s)	788
SatI	GCNGC	1 cut(s)	1087
Sau3AI	GATC	8 cut(s)	219, 234, 259, 499, 689, 763, 853, 981
Sau96I	GGNCC	5 cut(s)	675, 793, 808, 869, 941
SchI	GAGTC	3 cut(s)	95, 590, 1012
ScrFI	CCNGG	3 cut(s)	330, 936, 1091
SexAI	ACCWGGT	1 cut(s)	934
SfaNI	GCATC	4 cut(s)	133, 248, 326, 356
SfcI	CTRYAG	1 cut(s)	589
SinI	GGWCC	3 cut(s)	675, 869, 941
SmiMI	CAYNNNNRTG	1 cut(s)	864
SmlI	CTYRAG	2 cut(s)	203, 554
SmoI	CTYRAG	2 cut(s)	203, 554
SpeI	ACTAGT	1 cut(s)	1064
Sse9I	AATT	5 cut(s)	33, 191, 614, 658, 973
SsiI	CCGC	2 cut(s)	122, 950
SspMI	CTAG	4 cut(s)	528, 893, 1044, 1065
StyD4I	CCNGG	3 cut(s)	328, 934, 1089
TaaI	ACNGT	2 cut(s)	401, 622
TaqI	TCGA	2 cut(s)	258, 996
TasI	AATT	5 cut(s)	33, 191, 614, 658, 973
TatI	WGTACW	2 cut(s)	228, 707
TfiI	GAWTC	5 cut(s)	50, 67, 99, 115, 998
Tru1I	TTAA	1 cut(s)	788
Tru9I	TTAA	1 cut(s)	788
TscAI	CASTG	1 cut(s)	1077
TseFI	GTSAC	1 cut(s)	880
TseI	GCWGC	1 cut(s)	1086
Tsp45I	GTSAC	1 cut(s)	880
TspDTI	ATGAA	4 cut(s)	107, 561, 652, 1067
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	1 cut(s)	1077
VpaK11BI	GGWCC	3 cut(s)	675, 869, 941
XapI	RAATTY	3 cut(s)	614, 658, 973
XbaI	TCTAGA	1 cut(s)	1043
XceI	RCATGY	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	926
XmnI	GAANNNNTTC	1 cut(s)	49
XspI	CTAG	4 cut(s)	528, 893, 1044, 1065

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.