Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011214

Physical Location & Seq

Genomic Coordinates Reverse (-)

53472468 .. 53472650

Gene Structure 183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0435400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGTCATCGTCTTTCGGCTTAACAGAGGATCCAGTGGCAATTGGAGCTTTTCATGCATTAAAGAAAGGGATATTGACCATAACTGCTGCCGCGAACGCATCGCTATCGACTGTGGTGGCCAGCAGTATTGACAGGAGTTTGTGTCGCAGTTGGCTCTTGGAAATGGAAAGGTCTTCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0080167 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

60

Amino Acids

6.39

Weight (kDa)

6.52

Isoelectric Point (pI)

59.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53660
fragaria_vesca	FvH4_7g32780 FvH4_7g32780 FvH4_7g32780
malus_domestica	MD07G1297800.v1.1
prunus_persica	Prupe.2G317500_v2.0.a1 Prupe.2G317500_v2.0.a1 Prupe.2G317500_v2.0.a1 Prupe.2G317500_v2.0.a1
pyrus_communis	pycom07g27020
rosa_chinensis	RchiOBHm_Chr1g0382681
rosa_laevigata	RLG00000026165
rosa_roxburghii	Rroxscaffold_4G00277950
rosa_rugosa	Rorug01G0435400
rosa_samantha	Rh1AG460600 Rh1BG417400 Rh1CG431000 Rh1DG449600 Rh2CG431600
rosa_wichuraiana	Rw1G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	92
AciI	CCGC	1 cut(s)	90
AclWI	GGATC	2 cut(s)	23, 36
AcoI	YGGCCR	1 cut(s)	117
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
AlwI	GGATC	2 cut(s)	23, 36
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	119
BamHI	GGATCC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	73
BcgI	CGANNNNNNTGC	2 cut(s)	87, 121
BisI	GCNGC	2 cut(s)	87, 90
BlsI	GCNGC	2 cut(s)	88, 91
BmiI	GGNNCC	1 cut(s)	30
BmsI	GCATC	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bse1I	ACTGG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	73
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	1 cut(s)	119
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	2 cut(s)	23, 36
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	121
BstFNI	CGCG	1 cut(s)	92
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 53, 95
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	119
BtgZI	GCGATG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	121
CviAII	CATG	2 cut(s)	53, 177
CviJI	RGCY	4 cut(s)	18, 47, 119, 154
CviKI_1	RGCY	4 cut(s)	18, 47, 119, 154
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	117
EcoT22I	ATGCAT	1 cut(s)	58
FaeI	CATG	2 cut(s)	56, 180
FaiI	YATR	3 cut(s)	54, 80, 178
FatI	CATG	2 cut(s)	52, 176
Fnu4HI	GCNGC	2 cut(s)	87, 90
Fsp4HI	GCNGC	2 cut(s)	87, 90
GluI	GCNGC	2 cut(s)	87, 90
HaeIII	GGCC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	56, 180
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 53, 95
Hsp92II	CATG	2 cut(s)	56, 180
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	3 cut(s)	45, 118, 133
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	107
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	1 cut(s)	165
MfeI	CAATTG	1 cut(s)	39
MflI	RGATCY	1 cut(s)	28
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	1 cut(s)	39
MluNI	TGGCCA	1 cut(s)	119
MnlI	CCTC	1 cut(s)	19
Mox20I	TGGCCA	1 cut(s)	119
Mph1103I	ATGCAT	1 cut(s)	58
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	2 cut(s)	20, 59
Msp20I	TGGCCA	1 cut(s)	119
MunI	CAATTG	1 cut(s)	39
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	44, 53, 95
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	56, 180
NlaIV	GGNNCC	1 cut(s)	30
NsiI	ATGCAT	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	88, 91
PspN4I	GGNNCC	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	20, 59
SatI	GCNGC	2 cut(s)	87, 90
Sau3AI	GATC	1 cut(s)	28
SetI	ASST	2 cut(s)	49, 173
SfaNI	GCATC	1 cut(s)	107
SgeI	CNNG	6 cut(s)	44, 65, 103, 132, 145, 169
Sse9I	AATT	1 cut(s)	39
SsiI	CCGC	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	107
TasI	AATT	1 cut(s)	39
TauI	GCSGC	1 cut(s)	92
Tru1I	TTAA	2 cut(s)	20, 59
Tru9I	TTAA	2 cut(s)	20, 59
TscAI	CASTG	1 cut(s)	39
TseI	GCWGC	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	41, 165
TspRI	CASTG	1 cut(s)	39
Zsp2I	ATGCAT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.