AT5G54010

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009183
Physical Location & Seq
Reverse (-)
21919593 .. 21921225
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G54010.1

Sequence Viewer

Length: 1362 bp
ATGGGGTCAAAGTTTCATGCTTTTATGTTCCCATGGTTTGGTTTTGGTCACATGACTGCATTTTTGCATCTGGCTAACAAACTAGCGGAGAAAGACCACAAAATAACTTTCTTGCTCCCCAAGAAAGCTCGAAAGCAACTTGAATCTCTCAATCTCTTCCCAGACTGCATTGTCTTTCAGACTCTTACCATCCCATCTGTAGATGGCCTCCCTGATGGTGCTGAGACAACCTCGGATATCCCGATCTCGTTAGGCAGTTTTCTCGCCTCGGCTATGGATCGGACACGCATTCAGGTCAAAGAAGCAGTTTCTGTTGGTAAACCGGATCTGATTTTCTTCGATTTTGCTCACTGGATTCCGGAAATAGCTAGAGAGTATGGAGTCAAGAGTGTCAATTTCATAACGATTTCTGCAGCATGTGTAGCTATTTCGTTCGTCCCTGGTCGTAGTCAAGATGACTTGGGTAGTACTCCACCGGGATACCCTTCCTCCAAGGTGTTGCTTCGGGGACACGAAACCAACAGTTTGTCGTTCCTCTCCTATCCGTTTGGAGATGGAACTAGTTTTTACGAACGGATCATGATAGGACTTAAGAACTGCGATGTCATTTCGATAAGGACATGCCAAGAAATGGAAGGAAAGTTCTGCGATTTCATCGAAAACCAATTTCAAAGAAAAGTTCTCTTGACAGGTCCAATGCTTCCTGAGCCGGACAATAGCAAACCGCTAGAAGATCAATGGCGTCAGTGGCTTAGCAAGTTCGATCCGGGATCAGTAATATATTGTGCATTGGGCAGCCAAATCATTCTTGAAAAGGATCAATTCCAAGAACTCTGTTTAGGAATGGAGCTGACAGGTTTACCATTTCTTGTAGCGGTAAAGCCACCAAAAGGTTCATCGACAATCCAAGAAGCCTTACCAAAAGGGTTTGAAGAGAGGGTTAAAGCACGTGGAGTGGTTTGGGGAGGATGGGTGCAGCAACCATTGATATTAGCTCATCCATCAATAGGCTGCTTTGTGAGCCATTGTGGTTTCGGGTCAATGTGGGAGGCTCTAGTGAATGACTGCCAAATAGTGTTTATTCCACATTTGGGTGAGCAAATATTGAACACAAGACTGATGAGCGAGGAACTCAAGGTCTCGGTAGAGGTGAAAAGAGAGGAAACGGGATGGTTTTCGAAGGAGAGCTTGAGCGGTGCGGTCAGGTCTGTGATGGACAGAGATAGCGAGCTCGGGAATTGGGCGAGGAGGAACCACGTAAAGTGGAAGGAGTCTCTGCTTCGTCATGGACTAATGAGTGGTTATCTTAATAAGTTCGTAGAAGCATTGGAGAAACTAGTCCAAAATATAAATCTTGAATGA

Protein Analysis

453

Amino Acids

50.83

Weight (kDa)

6.16

Isoelectric Point (pI)

34.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 323 - 409 2.1e-09 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AccB7I CCANNNNNTGG 2 cut(s) 38, 631
AccBSI CCGCTC 1 cut(s) 1194
AccIII TCCGGA 1 cut(s) 358
AciI CCGC 5 cut(s) 86, 725, 875, 1194, 1199
AclWI GGATC 6 cut(s) 285, 333, 584, 758, 778, 825
AcvI CACGTG 1 cut(s) 950
AcyI GRCGYC 1 cut(s) 742
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 5 cut(s) 38, 631, 890, 1007, 1091
AflII CTTAAG 1 cut(s) 590
AgsI TTSAA 6 cut(s) 143, 671, 812, 932, 1108, 1358
AhlI ACTAGT 2 cut(s) 560, 1336
AjnI CCWGG 1 cut(s) 439
AloI GAACNNNNNNTCC 2 cut(s) 626, 658
AluBI AGCT 7 cut(s) 128, 368, 425, 850, 995, 1188, 1231
AluI AGCT 7 cut(s) 128, 368, 425, 850, 995, 1188, 1231
Alw21I GWGCWC 1 cut(s) 1233
Alw26I GTCTC 3 cut(s) 218, 1144, 1278
AlwI GGATC 6 cut(s) 285, 333, 584, 758, 778, 825
AlwNI CAGNNNCTG 1 cut(s) 311
Ama87I CYCGRG 1 cut(s) 1232
Aor13HI TCCGGA 1 cut(s) 358
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 4 cut(s) 413, 795, 976, 1011
ArsI GACNNNNNNTTYG 2 cut(s) 46, 78
AspS9I GGNCC 1 cut(s) 692
AsuC2I CCSGG 2 cut(s) 477, 768
AsuHPI GGTGA 2 cut(s) 1106, 1162
AsuII TTCGAA 1 cut(s) 1178
AvaI CYCGRG 1 cut(s) 1232
AvaII GGWCC 1 cut(s) 692
BanII GRGCYC 1 cut(s) 1233
BbrPI CACGTG 1 cut(s) 950
Bbv12I GWGCWC 1 cut(s) 1233
BbvI GCAGC 4 cut(s) 425, 807, 988, 998
BccI CCATC 9 cut(s) 197, 197, 202, 209, 548, 963, 1009, 1164, 1207
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciT130I CCWGG 1 cut(s) 441
BciVI GTATCC 1 cut(s) 473
BcnI CCSGG 2 cut(s) 477, 768
BcoDI GTCTC 3 cut(s) 218, 1144, 1278
BcuI ACTAGT 2 cut(s) 560, 1336
BfaI CTAG 6 cut(s) 83, 369, 561, 728, 1055, 1337
BfmI CTRYAG 2 cut(s) 198, 411
BfrI CTTAAG 1 cut(s) 590
BfuI GTATCC 1 cut(s) 473
BisI GCNGC 4 cut(s) 414, 796, 977, 1012
BlpI GCTNAGC 1 cut(s) 752
BlsI GCNGC 4 cut(s) 415, 797, 978, 1013
BmcAI AGTACT 1 cut(s) 469
Bme1390I CCNGG 3 cut(s) 441, 477, 768
Bme18I GGWCC 1 cut(s) 692
BmeT110I CYCGRG 1 cut(s) 1232
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 1 cut(s) 1253
BmrFI CCNGG 3 cut(s) 441, 477, 768
BmsI GCATC 1 cut(s) 76
BplI GAGNNNNNCTC 2 cut(s) 215, 247
Bpu10I CCTNAGC 1 cut(s) 705
Bpu1102I GCTNAGC 1 cut(s) 752
Bpu14I TTCGAA 1 cut(s) 1178
BpuEI CTTGAG 2 cut(s) 1118, 1210
BpuMI CCSGG 2 cut(s) 477, 768
BsaAI YACGTR 2 cut(s) 950, 1258
BsaHI GRCGYC 1 cut(s) 742
BsaI GGTCTC 1 cut(s) 1144
BsaJI CCNNGG 5 cut(s) 32, 231, 267, 439, 492
BsaWI WCCGGW 2 cut(s) 322, 358
BsaXI ACNNNNNCTCC 4 cut(s) 473, 503, 957, 987
Bsc4I CCNNNNNNNGG 5 cut(s) 38, 631, 890, 1007, 1091
Bse1I ACTGG 1 cut(s) 356
BseAI TCCGGA 1 cut(s) 358
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 5 cut(s) 32, 231, 267, 439, 492
BseGI GGATG 4 cut(s) 189, 974, 997, 1175
BseLI CCNNNNNNNGG 5 cut(s) 38, 631, 890, 1007, 1091
BseMII CTCAG 2 cut(s) 213, 696
BseNI ACTGG 1 cut(s) 356
BseRI GAGGAG 1 cut(s) 1261
BseXI GCAGC 4 cut(s) 425, 807, 988, 998
BsgI GTGCAG 1 cut(s) 995
BshFI GGCC 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 1233
BsiHKCI CYCGRG 1 cut(s) 1232
BsiSI CCGG 5 cut(s) 323, 359, 476, 710, 767
BslFI GGGAC 2 cut(s) 422, 522
BslI CCNNNNNNNGG 5 cut(s) 38, 631, 890, 1007, 1091
BsmAI GTCTC 3 cut(s) 218, 1144, 1278
BsmFI GGGAC 2 cut(s) 422, 522
BsmI GAATGC 1 cut(s) 288
BsnI GGCC 1 cut(s) 207
Bso31I GGTCTC 1 cut(s) 1144
BsoBI CYCGRG 1 cut(s) 1232
Bsp119I TTCGAA 1 cut(s) 1178
Bsp1286I GDGCHC 1 cut(s) 1233
Bsp13I TCCGGA 1 cut(s) 358
Bsp143I GATC 8 cut(s) 243, 277, 325, 576, 733, 763, 770, 817
Bsp1720I GCTNAGC 1 cut(s) 752
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 5 cut(s) 86, 725, 875, 1194, 1199
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 2 cut(s) 214, 697
BspEI TCCGGA 1 cut(s) 358
BspHI TCATGA 1 cut(s) 579
BspLI GGNNCC 1 cut(s) 1253
BspMAI CTGCAG 1 cut(s) 415
BspPI GGATC 6 cut(s) 285, 333, 584, 758, 778, 825
BspT104I TTCGAA 1 cut(s) 1178
BspTI CTTAAG 1 cut(s) 590
BspTNI GGTCTC 1 cut(s) 1144
BsrBI CCGCTC 1 cut(s) 1194
BsrI ACTGG 1 cut(s) 356
BssECI CCNNGG 5 cut(s) 32, 231, 267, 439, 492
BssMI GATC 8 cut(s) 243, 277, 325, 576, 733, 763, 770, 817
BssNI GRCGYC 1 cut(s) 742
BssT1I CCWWGG 2 cut(s) 32, 492
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 1 cut(s) 524
Bst6I CTCTTC 2 cut(s) 161, 927
BstACI GRCGYC 1 cut(s) 742
BstAFI CTTAAG 1 cut(s) 590
BstBAI YACGTR 2 cut(s) 950, 1258
BstBI TTCGAA 1 cut(s) 1178
BstC8I GCNNGC 1 cut(s) 1229
BstDEI CTNAG 3 cut(s) 222, 705, 752
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 4 cut(s) 189, 974, 997, 1175
BstKTI GATC 8 cut(s) 246, 280, 328, 579, 736, 766, 773, 820
BstMAI GTCTC 3 cut(s) 218, 1144, 1278
BstMBI GATC 8 cut(s) 243, 277, 325, 576, 733, 763, 770, 817
BstMWI GCNNNNNNNGC 4 cut(s) 422, 706, 748, 1020
BstNI CCWGG 1 cut(s) 441
BstNSI RCATGY 2 cut(s) 420, 624
BstSCI CCNGG 3 cut(s) 439, 475, 766
BstSFI CTRYAG 2 cut(s) 198, 411
BstV1I GCAGC 4 cut(s) 425, 807, 988, 998
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BsuI GTATCC 1 cut(s) 473
BsuRI GGCC 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 32
BtgZI GCGATG 1 cut(s) 615
BtsCI GGATG 4 cut(s) 189, 974, 997, 1175
BtsIMutI CAGTG 2 cut(s) 349, 752
Cac8I GCNNGC 1 cut(s) 1229
CaiI CAGNNNCTG 1 cut(s) 311
CciI TCATGA 1 cut(s) 579
Cfr13I GGNCC 1 cut(s) 692
CseI GACGC 1 cut(s) 731
Csp6I GTAC 1 cut(s) 468
CviAII CATG 7 cut(s) 17, 33, 52, 417, 580, 621, 1286
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 3 cut(s) 222, 705, 752
DpnI GATC 8 cut(s) 245, 279, 327, 578, 735, 765, 772, 819
DpnII GATC 8 cut(s) 243, 277, 325, 576, 733, 763, 770, 817
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 2 cut(s) 161, 927
EarI CTCTTC 2 cut(s) 161, 927
Ecl136II GAGCTC 1 cut(s) 1231
Eco130I CCWWGG 2 cut(s) 32, 492
Eco24I GRGCYC 1 cut(s) 1233
Eco31I GGTCTC 1 cut(s) 1144
Eco32I GATATC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 692
Eco53kI GAGCTC 1 cut(s) 1231
Eco72I CACGTG 1 cut(s) 950
Eco88I CYCGRG 1 cut(s) 1232
EcoICRI GAGCTC 1 cut(s) 1231
EcoRII CCWGG 1 cut(s) 439
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 2 cut(s) 32, 492
EcoT38I GRGCYC 1 cut(s) 1233
ErhI CCWWGG 2 cut(s) 32, 492
FaeI CATG 7 cut(s) 20, 36, 55, 420, 583, 624, 1289
FalI AAGNNNNNCTT 2 cut(s) 1172, 1204
FaqI GGGAC 2 cut(s) 422, 522
FatI CATG 7 cut(s) 16, 32, 51, 416, 579, 620, 1285
Fnu4HI GCNGC 4 cut(s) 414, 796, 977, 1012
FokI GGATG 4 cut(s) 176, 981, 984, 1182
FriOI GRGCYC 1 cut(s) 1233
Fsp4HI GCNGC 4 cut(s) 414, 796, 977, 1012
FspBI CTAG 6 cut(s) 83, 369, 561, 728, 1055, 1337
GluI GCNGC 4 cut(s) 414, 796, 977, 1012
HaeIII GGCC 1 cut(s) 207
HapII CCGG 5 cut(s) 323, 359, 476, 710, 767
HgaI GACGC 1 cut(s) 731
Hin1I GRCGYC 1 cut(s) 742
Hin1II CATG 7 cut(s) 20, 36, 55, 420, 583, 624, 1289
HinfI GANTC 5 cut(s) 143, 181, 355, 381, 1271
HpaII CCGG 5 cut(s) 323, 359, 476, 710, 767
HphI GGTGA 2 cut(s) 1106, 1162
Hpy166II GTNNAC 2 cut(s) 320, 860
Hpy188I TCNGA 4 cut(s) 180, 235, 282, 330
Hpy8I GTNNAC 2 cut(s) 320, 860
HpyAV CCTTC 4 cut(s) 495, 629, 1174, 1261
HpyCH4III ACNGT 1 cut(s) 524
HpyCH4IV ACGT 2 cut(s) 949, 1257
HpyCH4V TGCA 6 cut(s) 59, 67, 168, 413, 788, 976
HpyF10VI GCNNNNNNNGC 4 cut(s) 422, 706, 748, 1020
HpyF3I CTNAG 3 cut(s) 222, 705, 752
HpySE526I ACGT 2 cut(s) 949, 1257
Hsp92I GRCGYC 1 cut(s) 742
Hsp92II CATG 7 cut(s) 20, 36, 55, 420, 583, 624, 1289
Kpn2I TCCGGA 1 cut(s) 358
Kzo9I GATC 8 cut(s) 243, 277, 325, 576, 733, 763, 770, 817
LmnI GCTCC 2 cut(s) 120, 847
Lsp1109I GCAGC 4 cut(s) 425, 807, 988, 998
LweI GCATC 1 cut(s) 76
MaeI CTAG 6 cut(s) 83, 369, 561, 728, 1055, 1337
MaeII ACGT 2 cut(s) 949, 1257
MaeIII GTNAC 1 cut(s) 47
MalI GATC 8 cut(s) 245, 279, 327, 578, 735, 765, 772, 819
MbiI CCGCTC 1 cut(s) 1194
MboI GATC 8 cut(s) 243, 277, 325, 576, 733, 763, 770, 817
MboII GAAGA 4 cut(s) 148, 328, 743, 944
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 1233
MluCI AATT 4 cut(s) 394, 665, 821, 1237
MlyI GAGTC 3 cut(s) 175, 390, 1280
MroI TCCGGA 1 cut(s) 358
MseI TTAA 3 cut(s) 591, 942, 1308
MslI CAYNNNNRTG 1 cut(s) 1092
MspCI CTTAAG 1 cut(s) 590
MspI CCGG 5 cut(s) 323, 359, 476, 710, 767
MspR9I CCNGG 3 cut(s) 441, 477, 768
Mva1269I GAATGC 1 cut(s) 288
MvaI CCWGG 1 cut(s) 441
MwoI GCNNNNNNNGC 4 cut(s) 422, 706, 748, 1020
NciI CCSGG 2 cut(s) 477, 768
NcoI CCATGG 1 cut(s) 32
NdeII GATC 8 cut(s) 243, 277, 325, 576, 733, 763, 770, 817
NlaIII CATG 7 cut(s) 20, 36, 55, 420, 583, 624, 1289
NlaIV GGNNCC 1 cut(s) 1253
NmeAIII GCCGAG 1 cut(s) 248
NmuCI GTSAC 1 cut(s) 47
NspI RCATGY 2 cut(s) 420, 624
NspV TTCGAA 1 cut(s) 1178
PagI TCATGA 1 cut(s) 579
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PctI GAATGC 1 cut(s) 288
PfeI GAWTC 2 cut(s) 143, 355
PflMI CCANNNNNTGG 2 cut(s) 38, 631
PfoI TCCNGGA 1 cut(s) 766
PkrI GCNGC 4 cut(s) 415, 797, 978, 1013
PleI GAGTC 3 cut(s) 175, 389, 1279
PmaCI CACGTG 1 cut(s) 950
PmlI CACGTG 1 cut(s) 950
PpsI GAGTC 3 cut(s) 175, 389, 1279
Ppu21I YACGTR 2 cut(s) 950, 1258
Psp124BI GAGCTC 1 cut(s) 1233
Psp6I CCWGG 1 cut(s) 439
PspCI CACGTG 1 cut(s) 950
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 1 cut(s) 1253
PspPI GGNCC 1 cut(s) 692
PstI CTGCAG 1 cut(s) 415
PstNI CAGNNNCTG 1 cut(s) 311
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 1 cut(s) 1092
SacI GAGCTC 1 cut(s) 1233
SaqAI TTAA 3 cut(s) 591, 942, 1308
SatI GCNGC 4 cut(s) 414, 796, 977, 1012
Sau3AI GATC 8 cut(s) 243, 277, 325, 576, 733, 763, 770, 817
Sau96I GGNCC 1 cut(s) 692
ScaI AGTACT 1 cut(s) 469
SchI GAGTC 3 cut(s) 175, 390, 1280
ScrFI CCNGG 3 cut(s) 441, 477, 768
SduI GDGCHC 1 cut(s) 1233
SfaNI GCATC 1 cut(s) 76
SfcI CTRYAG 2 cut(s) 198, 411
SfuI TTCGAA 1 cut(s) 1178
SinI GGWCC 1 cut(s) 692
SmiMI CAYNNNNRTG 1 cut(s) 1092
SmlI CTYRAG 3 cut(s) 590, 1133, 1189
SmoI CTYRAG 3 cut(s) 590, 1133, 1189
SpeI ACTAGT 2 cut(s) 560, 1336
Sse9I AATT 4 cut(s) 394, 665, 821, 1237
SsiI CCGC 5 cut(s) 86, 725, 875, 1194, 1199
SspI AATATT 1 cut(s) 1104
SspMI CTAG 6 cut(s) 83, 369, 561, 728, 1055, 1337
SstI GAGCTC 1 cut(s) 1233
StyD4I CCNGG 3 cut(s) 439, 475, 766
StyI CCWWGG 2 cut(s) 32, 492
TaaI ACNGT 1 cut(s) 524
TaiI ACGT 2 cut(s) 952, 1260
TaqI TCGA 7 cut(s) 130, 339, 611, 657, 762, 899, 1178
TasI AATT 4 cut(s) 394, 665, 821, 1237
TatI WGTACW 1 cut(s) 467
TfiI GAWTC 2 cut(s) 143, 355
Tru1I TTAA 3 cut(s) 591, 942, 1308
Tru9I TTAA 3 cut(s) 591, 942, 1308
TscAI CASTG 2 cut(s) 356, 752
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 4 cut(s) 413, 795, 976, 1011
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 4 cut(s) 5, 388, 643, 885
TspGWI ACGGA 2 cut(s) 534, 589
TspRI CASTG 2 cut(s) 356, 752
Van91I CCANNNNNTGG 2 cut(s) 38, 631
Vha464I CTTAAG 1 cut(s) 590
VpaK11BI GGWCC 1 cut(s) 692
XceI RCATGY 2 cut(s) 420, 624
XspI CTAG 6 cut(s) 83, 369, 561, 728, 1055, 1337
ZrmI AGTACT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.