Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009183

Physical Location & Seq

Genomic Coordinates Reverse (-)

46542476 .. 46543223

Gene Structure 748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019106

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCTAATGACCGCGTGGTGACTGGTGACAGCTGGGACGACGTCCTCGTCGACTCCCGCTTGTCCCCTCCACTGGCCAAACCTTGTCAGAACCGGAAATGGTTCTGGCGATCATCAGAATTAGAGTCCAGTTGCTGTGGCCTGTGGAAGCACGGCGGAGGTTCCGAGGATCCTCCCGTTGTGAGAAGGACACTTTGGCGTCGAGTCTTCAGAACCCGTGGGCGAAGCAGCGGTGGTAAATCTCGAGCTCCGCATTTGGTGTTACGTACCCTCGGTTTTTGGGTGAGTAATCGCAAGGGACCTTGCGGAGGAGAGGAAGTGCTGATCTGCCTATGGCGGCAGCTTGAGATTGGAGGCGCTGCATCGGTCTGCCGGAGGGGCGAGCGGATCTTCCTTGACTCGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.22

Weight (kDa)

9.97

Isoelectric Point (pI)

65.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54010
fragaria_vesca	FvH4_3g19220
malus_domestica	MD03G1235400.v1.1 MD11G1256100.v1.1 MD11G1256300.v1.1
prunus_persica	Prupe.4G173600_v2.0.a1
pyrus_communis	pycom03g18190 pycom11g22670
rosa_chinensis	RchiOBHm_Chr5g0032301
rosa_laevigata	RLG00000019106 RLG00000033380 RLG00000033382 RLG00000033383
rosa_multiflora	Rmu_co8431583.1_g000001 Rmu_sc0002290.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048120 Rroxscaffold_1G00048150
rosa_rugosa	Rorug05G0130500
rosa_samantha	Rh5BG225100 Rh5CG250600 Rh5DG229700
rosa_wichuraiana	Rw5G020470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AatII	GACGTC	1 cut(s)	45
AccBSI	CCGCTC	1 cut(s)	385
AccI	GTMKAC	1 cut(s)	51
AccII	CGCG	1 cut(s)	15
AciI	CCGC	8 cut(s)	13, 58, 156, 231, 251, 306, 337, 385
AclWI	GGATC	3 cut(s)	164, 177, 395
AcoI	YGGCCR	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	193
AcyI	GRCGYC	2 cut(s)	42, 199
AfaI	GTAC	1 cut(s)	268
AfiI	CCNNNNNNNGG	2 cut(s)	73, 308
AjuI	GAANNNNNNNTTGG	2 cut(s)	178, 210
AluBI	AGCT	3 cut(s)	33, 248, 343
AluI	AGCT	3 cut(s)	33, 248, 343
Alw21I	GWGCWC	1 cut(s)	250
AlwI	GGATC	3 cut(s)	164, 177, 395
AlwNI	CAGNNNCTG	1 cut(s)	135
Ama87I	CYCGRG	1 cut(s)	243
AoxI	GGCC	2 cut(s)	75, 139
ApeKI	GCWGC	3 cut(s)	228, 340, 359
Asp700I	GAANNNNTTC	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	3 cut(s)	31, 38, 295
AvaI	CYCGRG	1 cut(s)	243
AvaII	GGWCC	1 cut(s)	299
BalI	TGGCCA	1 cut(s)	77
BamHI	GGATCC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	3 cut(s)	240, 346, 352
BceAI	ACGGC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	406
BfoI	RGCGCY	1 cut(s)	360
BglI	GCCNNNNNGGC	1 cut(s)	378
BisI	GCNGC	4 cut(s)	229, 338, 341, 360
BlsI	GCNGC	4 cut(s)	230, 339, 342, 361
Bme18I	GGWCC	1 cut(s)	299
BmeT110I	CYCGRG	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	3 cut(s)	163, 171, 300
BmsI	GCATC	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	365
BsaAI	YACGTR	1 cut(s)	266
BsaHI	GRCGYC	2 cut(s)	42, 199
BsaJI	CCNNGG	3 cut(s)	165, 217, 271
BsaWI	WCCGGW	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 308
Bse1I	ACTGG	3 cut(s)	28, 78, 129
BseDI	CCNNGG	3 cut(s)	165, 217, 271
BseLI	CCNNNNNNNGG	2 cut(s)	73, 308
BseNI	ACTGG	3 cut(s)	28, 78, 129
BseRI	GAGGAG	1 cut(s)	324
BseXI	GCAGC	3 cut(s)	240, 346, 352
BseYI	CCCAGC	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	77, 141
BsiHKAI	GWGCWC	1 cut(s)	250
BsiHKCI	CYCGRG	1 cut(s)	243
BsiSI	CCGG	2 cut(s)	94, 373
BslFI	GGGAC	3 cut(s)	49, 50, 312
BslI	CCNNNNNNNGG	2 cut(s)	73, 308
BsmFI	GGGAC	3 cut(s)	49, 50, 312
BsnI	GGCC	2 cut(s)	77, 141
BsoBI	CYCGRG	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	4 cut(s)	110, 169, 324, 387
BspACI	CCGC	8 cut(s)	13, 58, 156, 231, 251, 306, 337, 385
BspANI	GGCC	2 cut(s)	77, 141
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	3 cut(s)	163, 171, 300
BspPI	GGATC	3 cut(s)	164, 177, 395
BsrBI	CCGCTC	1 cut(s)	385
BsrI	ACTGG	3 cut(s)	28, 78, 129
BssECI	CCNNGG	3 cut(s)	165, 217, 271
BssMI	GATC	4 cut(s)	110, 169, 324, 387
BssNI	GRCGYC	2 cut(s)	42, 199
BstACI	GRCGYC	2 cut(s)	42, 199
BstBAI	YACGTR	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	383
BstDSI	CCRYGG	1 cut(s)	217
BstENI	CCTNNNNNAGG	1 cut(s)	306
BstFNI	CGCG	1 cut(s)	15
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	4 cut(s)	113, 172, 327, 390
BstMBI	GATC	4 cut(s)	110, 169, 324, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstSNI	TACGTA	1 cut(s)	266
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	3 cut(s)	240, 346, 352
BstV2I	GAAGAC	1 cut(s)	199
BstX2I	RGATCY	2 cut(s)	169, 387
BstYI	RGATCY	2 cut(s)	169, 387
BsuRI	GGCC	2 cut(s)	77, 141
BtgI	CCRYGG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	383
CaiI	CAGNNNCTG	1 cut(s)	135
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	299
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	267
CviJI	RGCY	6 cut(s)	5, 33, 77, 141, 248, 343
CviKI_1	RGCY	6 cut(s)	5, 33, 77, 141, 248, 343
CviQI	GTAC	1 cut(s)	267
DpnI	GATC	4 cut(s)	112, 171, 326, 389
DpnII	GATC	4 cut(s)	110, 169, 324, 387
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	1 cut(s)	75
EciI	GGCGGA	1 cut(s)	171
Ecl136II	GAGCTC	1 cut(s)	248
Eco105I	TACGTA	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	299
Eco53kI	GAGCTC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	193
Eco88I	CYCGRG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	248
EcoNI	CCTNNNNNAGG	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	250
FaiI	YATR	1 cut(s)	334
FaqI	GGGAC	3 cut(s)	49, 50, 312
FauI	CCCGC	1 cut(s)	65
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	4 cut(s)	229, 338, 341, 360
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	4 cut(s)	229, 338, 341, 360
FspBI	CTAG	1 cut(s)	406
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	4 cut(s)	229, 338, 341, 360
GsaI	CCCAGC	1 cut(s)	37
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	77, 141
HapII	CCGG	2 cut(s)	94, 373
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	359
Hin1I	GRCGYC	2 cut(s)	42, 199
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	4 cut(s)	53, 125, 204, 398
HpaII	CCGG	2 cut(s)	94, 373
HphI	GGTGA	3 cut(s)	31, 38, 295
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	4 cut(s)	90, 118, 166, 212
Hpy188III	TCNNGA	1 cut(s)	243
Hpy8I	GTNNAC	1 cut(s)	52
Hpy99I	CGWCG	3 cut(s)	44, 53, 204
HpyAV	CCTTC	1 cut(s)	180
HpyCH4IV	ACGT	2 cut(s)	42, 265
HpyCH4V	TGCA	1 cut(s)	362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpySE526I	ACGT	2 cut(s)	42, 265
Hsp92I	GRCGYC	2 cut(s)	42, 199
HspAI	GCGC	1 cut(s)	357
Kzo9I	GATC	4 cut(s)	110, 169, 324, 387
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	8 cut(s)	9, 19, 59, 91, 107, 142, 155, 386
Lsp1109I	GCAGC	3 cut(s)	240, 346, 352
LweI	GCATC	1 cut(s)	371
MaeI	CTAG	1 cut(s)	406
MaeII	ACGT	2 cut(s)	42, 265
MaeIII	GTNAC	3 cut(s)	19, 26, 261
MalI	GATC	4 cut(s)	112, 171, 326, 389
MbiI	CCGCTC	1 cut(s)	385
MboI	GATC	4 cut(s)	110, 169, 324, 387
MboII	GAAGA	2 cut(s)	199, 382
MflI	RGATCY	2 cut(s)	169, 387
MhlI	GDGCHC	1 cut(s)	250
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	1 cut(s)	119
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	4 cut(s)	47, 134, 213, 392
Mox20I	TGGCCA	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	77
MspA1I	CMGCKG	2 cut(s)	33, 231
MspI	CCGG	2 cut(s)	94, 373
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	378
NdeII	GATC	4 cut(s)	110, 169, 324, 387
NlaIV	GGNNCC	3 cut(s)	163, 171, 300
NmuCI	GTSAC	2 cut(s)	19, 26
PaeR7I	CTCGAG	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 48
PdmI	GAANNNNTTC	1 cut(s)	101
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	4 cut(s)	230, 339, 342, 361
PleI	GAGTC	4 cut(s)	47, 133, 212, 392
PpsI	GAGTC	4 cut(s)	47, 133, 212, 392
Ppu21I	YACGTR	1 cut(s)	266
PpuMI	RGGWCCY	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	33
PspN4I	GGNNCC	3 cut(s)	163, 171, 300
PspPI	GGNCC	1 cut(s)	299
PspPPI	RGGWCCY	1 cut(s)	299
PstNI	CAGNNNCTG	1 cut(s)	135
PsuI	RGATCY	2 cut(s)	169, 387
PsyI	GACNNNGTC	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	33
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	250
SalI	GTCGAC	1 cut(s)	50
SatI	GCNGC	4 cut(s)	229, 338, 341, 360
Sau3AI	GATC	4 cut(s)	110, 169, 324, 387
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	4 cut(s)	47, 134, 213, 392
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	8 cut(s)	35, 45, 85, 163, 250, 268, 304, 345
SfaNI	GCATC	1 cut(s)	371
Sfr274I	CTCGAG	1 cut(s)	243
SinI	GGWCC	1 cut(s)	299
SlaI	CTCGAG	1 cut(s)	243
SmlI	CTYRAG	2 cut(s)	243, 344
SmoI	CTYRAG	2 cut(s)	243, 344
SnaBI	TACGTA	1 cut(s)	266
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	8 cut(s)	13, 58, 156, 231, 251, 306, 337, 385
SspMI	CTAG	1 cut(s)	406
SstI	GAGCTC	1 cut(s)	250
TaiI	ACGT	2 cut(s)	45, 268
TaqI	TCGA	4 cut(s)	51, 202, 244, 401
TaqII	GACCGA	1 cut(s)	355
TasI	AATT	1 cut(s)	119
TauI	GCSGC	1 cut(s)	340
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	2 cut(s)	19, 26
TseI	GCWGC	3 cut(s)	228, 340, 359
Tsp45I	GTSAC	2 cut(s)	19, 26
TspRI	CASTG	1 cut(s)	78
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	299
XagI	CCTNNNNNAGG	1 cut(s)	306
XhoI	CTCGAG	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	101
XspI	CTAG	1 cut(s)	406
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.