Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016488

Physical Location & Seq

Genomic Coordinates Forward (+)

22808641 .. 22810747

Gene Structure 2107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAGTTTTTTGGTAAAATGATAATTTCATTGAGTCTTATGATGATGATAATGTGGAAGAGCGTGGATGGTTACAGTAGTGGTTGGGTCAATGCTCGAGCCACATTCTATGGAGGAGCTGATGCTTCTGGCACCATGGGCGGCGCGTGTGGTTACGGAAACTTATACAGTCAAGGATACGGCACTAACACGGCGGCTCTAAGCACGGCTCTATTCAACGGCGGCCAAAGCTGTGGTGCTTGTTTTCAGATAAAATGCGTAGACGACCCAAAATGGTGTATCGGTGGAACAATCACCGTCACCGGAACAAACTTTTGTCCACCCAACTTTGCTCAAGCCAACAACGCCGGAGGTTGGTGTAATCCTCCTCAACACCACTTCGATTTAGCTCAGCCCATCTTCCTCCGTATTGCTCAATACAAAGCCGGCGTCGTCCCTGTCCAATACCGGAGAGTGGCTTGCCGGAGAAAAGGAGGAATAAGATTCACGATCAACGGTCATTCATACTTCAACCTCGTACTTATAACCAACGTCGCCGGCGCCGGAGATGTTATCTCCGTCTCCATTAAAGGAACCAATACACGTTGGCAAAGCATGTCAAGAAACTGGGGACAGAATTGGCAAAGCAATGCAAAACTTGATGGTCAAGCTTTGTCCTTTAAAGTAACAACTAGTGATGGCCGTACAGTTATATCTAACAATGCTACACCACGTAACTGGAGCTTCGGACAGACTTATACCGGAAAACAGTTCCGGGCTCAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0007275 GO:0008150 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0016020 GO:0016043 GO:0022622 GO:0030312 GO:0032501 GO:0032502 GO:0042545 GO:0044464 GO:0045229 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

255

Amino Acids

27.73

Weight (kDa)

9.69

Isoelectric Point (pI)

25.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	34 - 155	3.2e-07	EXPB1-like domain 1
DPBB_1	PF03330	64 - 149	2.2e-20	Lytic transglycolase
Expansin_C	PF01357	160 - 237	2.3e-31	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56320 AT5G56320
fragaria_vesca	FvH4_3g45970 FvH4_6g33460
rosa_chinensis	RchiOBHm_Chr5g0084081
rosa_laevigata	RLG00000020030 RLG00000037080
rosa_multiflora	Rmu_ssc0000372.1_g000092
rosa_roxburghii	Rroxscaffold_1G00000560
rosa_rugosa	Rorug05G0489000
rosa_samantha	Rh5BG567100 Rh5CG588900 Rh5DG575300
rosa_wichuraiana	Rw5G050370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	524
AccB1I	GGYRCC	2 cut(s)	131, 539
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	1 cut(s)	146
AciI	CCGC	3 cut(s)	141, 194, 222
AcoI	YGGCCR	2 cut(s)	223, 679
AcyI	GRCGYC	2 cut(s)	429, 540
AfaI	GTAC	2 cut(s)	519, 685
AfiI	CCNNNNNNNGG	2 cut(s)	354, 454
AflIII	ACRYGT	1 cut(s)	581
AgsI	TTSAA	2 cut(s)	217, 511
AhlI	ACTAGT	1 cut(s)	671
AluBI	AGCT	5 cut(s)	119, 231, 389, 650, 723
AluI	AGCT	5 cut(s)	119, 231, 389, 650, 723
Alw26I	GTCTC	1 cut(s)	565
Ama87I	CYCGRG	1 cut(s)	96
AoxI	GGCC	2 cut(s)	223, 679
ArsI	GACNNNNNNTTYG	2 cut(s)	414, 446
AspLEI	GCGC	2 cut(s)	146, 542
AsuC2I	CCSGG	1 cut(s)	755
AsuHPI	GGTGA	2 cut(s)	286, 292
AvaI	CYCGRG	1 cut(s)	96
BanI	GGYRCC	2 cut(s)	131, 539
BanII	GRGCYC	1 cut(s)	760
BccI	CCATC	4 cut(s)	62, 404, 635, 671
BceAI	ACGGC	5 cut(s)	196, 207, 222, 235, 666
BciVI	GTATCC	1 cut(s)	170
BcnI	CCSGG	1 cut(s)	755
BcoDI	GTCTC	1 cut(s)	565
BcuI	ACTAGT	1 cut(s)	671
BfaI	CTAG	1 cut(s)	672
BfoI	RGCGCY	1 cut(s)	543
BfuI	GTATCC	1 cut(s)	170
BisI	GCNGC	3 cut(s)	142, 195, 223
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	3 cut(s)	143, 196, 224
Bme1390I	CCNGG	1 cut(s)	755
BmeT110I	CYCGRG	1 cut(s)	96
BmiI	GGNNCC	3 cut(s)	133, 541, 574
BmrFI	CCNGG	1 cut(s)	755
BmrI	ACTGGG	1 cut(s)	616
BmsI	GCATC	1 cut(s)	112
BmuI	ACTGGG	1 cut(s)	616
BpmI	CTGGAG	1 cut(s)	739
Bpu1102I	GCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	755
BsaAI	YACGTR	1 cut(s)	713
BsaHI	GRCGYC	2 cut(s)	429, 540
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	3 cut(s)	302, 447, 740
Bsc4I	CCNNNNNNNGG	2 cut(s)	354, 454
Bse118I	RCCGGY	2 cut(s)	425, 536
Bse1I	ACTGG	2 cut(s)	611, 722
Bse3DI	GCAATG	1 cut(s)	634
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	2 cut(s)	354, 454
BseMI	GCAATG	1 cut(s)	634
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	2 cut(s)	611, 722
BseRI	GAGGAG	2 cut(s)	129, 357
Bsh1236I	CGCG	1 cut(s)	146
BshFI	GGCC	2 cut(s)	225, 681
BshNI	GGYRCC	2 cut(s)	131, 539
BsiHKCI	CYCGRG	1 cut(s)	96
BsiSI	CCGG	9 cut(s)	303, 348, 426, 448, 463, 537, 543, 741, 754
BslFI	GGGAC	2 cut(s)	419, 624
BslI	CCNNNNNNNGG	2 cut(s)	354, 454
BsmAI	GTCTC	1 cut(s)	565
BsmBI	CGTCTC	1 cut(s)	565
BsmFI	GGGAC	2 cut(s)	419, 624
BsnI	GGCC	2 cut(s)	225, 681
BsoBI	CYCGRG	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	760
Bsp143I	GATC	1 cut(s)	489
Bsp1720I	GCTNAGC	1 cut(s)	390
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	3 cut(s)	141, 194, 222
BspANI	GGCC	2 cut(s)	225, 681
BspCNI	CTCAG	1 cut(s)	403
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	3 cut(s)	133, 541, 574
BspQI	GCTCTTC	1 cut(s)	53
BspT107I	GGYRCC	2 cut(s)	131, 539
BsrDI	GCAATG	1 cut(s)	634
BsrFI	RCCGGY	2 cut(s)	425, 536
BsrI	ACTGG	2 cut(s)	611, 722
BssAI	RCCGGY	2 cut(s)	425, 536
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	489
BssNI	GRCGYC	2 cut(s)	429, 540
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	6 cut(s)	77, 170, 298, 497, 688, 750
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	2 cut(s)	429, 540
BstBAI	YACGTR	1 cut(s)	713
BstC8I	GCNNGC	3 cut(s)	427, 460, 538
BstDEI	CTNAG	3 cut(s)	200, 390, 759
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	73
BstFNI	CGCG	1 cut(s)	146
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	2 cut(s)	146, 542
BstKTI	GATC	1 cut(s)	492
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	1 cut(s)	489
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 228, 344
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	1 cut(s)	753
BstUI	CGCG	1 cut(s)	146
BstXI	CCANNNNNNTGG	2 cut(s)	233, 717
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	2 cut(s)	225, 681
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	73
Cac8I	GCNNGC	3 cut(s)	427, 460, 538
CfoI	GCGC	2 cut(s)	146, 542
Cfr10I	RCCGGY	2 cut(s)	425, 536
CseI	GACGC	1 cut(s)	418
Csp6I	GTAC	2 cut(s)	518, 684
CviAII	CATG	2 cut(s)	136, 595
CviQI	GTAC	2 cut(s)	518, 684
DdeI	CTNAG	3 cut(s)	200, 390, 759
DinI	GGCGCC	1 cut(s)	541
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
DraI	TTTAAA	1 cut(s)	661
EaeI	YGGCCR	2 cut(s)	223, 679
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	760
Eco88I	CYCGRG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	760
EgeI	GGCGCC	1 cut(s)	541
EheI	GGCGCC	1 cut(s)	541
ErhI	CCWWGG	1 cut(s)	135
Esp3I	CGTCTC	1 cut(s)	565
FaeI	CATG	2 cut(s)	139, 598
FaiI	YATR	9 cut(s)	41, 111, 137, 166, 505, 524, 596, 692, 738
FaqI	GGGAC	2 cut(s)	419, 624
FatI	CATG	2 cut(s)	135, 594
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	3 cut(s)	142, 195, 223
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	1 cut(s)	760
Fsp4HI	GCNGC	3 cut(s)	142, 195, 223
FspBI	CTAG	1 cut(s)	672
GlaI	GCGC	2 cut(s)	145, 541
GluI	GCNGC	3 cut(s)	142, 195, 223
GsuI	CTGGAG	1 cut(s)	739
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	2 cut(s)	225, 681
HapII	CCGG	9 cut(s)	303, 348, 426, 448, 463, 537, 543, 741, 754
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	2 cut(s)	146, 542
Hin1I	GRCGYC	2 cut(s)	429, 540
Hin1II	CATG	2 cut(s)	139, 598
Hin6I	GCGC	2 cut(s)	144, 540
HinP1I	GCGC	2 cut(s)	144, 540
HindIII	AAGCTT	1 cut(s)	648
HinfI	GANTC	2 cut(s)	34, 483
HpaII	CCGG	9 cut(s)	303, 348, 426, 448, 463, 537, 543, 741, 754
HphI	GGTGA	2 cut(s)	286, 292
Hpy166II	GTNNAC	2 cut(s)	262, 320
Hpy188I	TCNGA	3 cut(s)	249, 728, 762
Hpy188III	TCNNGA	2 cut(s)	487, 600
Hpy8I	GTNNAC	2 cut(s)	262, 320
Hpy99I	CGWCG	2 cut(s)	434, 536
HpyCH4III	ACNGT	6 cut(s)	77, 170, 298, 497, 688, 750
HpyCH4IV	ACGT	3 cut(s)	531, 583, 712
HpyCH4V	TGCA	1 cut(s)	632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 228, 344
HpyF3I	CTNAG	3 cut(s)	200, 390, 759
HpySE526I	ACGT	3 cut(s)	531, 583, 712
Hsp92I	GRCGYC	2 cut(s)	429, 540
Hsp92II	CATG	2 cut(s)	139, 598
HspAI	GCGC	2 cut(s)	144, 540
KasI	GGCGCC	1 cut(s)	539
KroI	GCCGGC	2 cut(s)	425, 536
KroNI	GCCGGC	2 cut(s)	427, 538
Kzo9I	GATC	1 cut(s)	489
LguI	GCTCTTC	1 cut(s)	53
LmnI	GCTCC	2 cut(s)	116, 720
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	672
MaeII	ACGT	3 cut(s)	531, 583, 712
MaeIII	GTNAC	5 cut(s)	71, 152, 298, 664, 713
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	2 cut(s)	70, 391
MhlI	GDGCHC	1 cut(s)	760
MluCI	AATT	2 cut(s)	24, 616
Mly113I	GGCGCC	1 cut(s)	540
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	8 cut(s)	107, 344, 375, 378, 413, 467, 524, 756
MreI	CGCCGGCG	1 cut(s)	536
MroNI	GCCGGC	2 cut(s)	425, 536
MseI	TTAA	2 cut(s)	567, 660
MspI	CCGG	9 cut(s)	303, 348, 426, 448, 463, 537, 543, 741, 754
MspR9I	CCNGG	1 cut(s)	755
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	3 cut(s)	138, 228, 344
NaeI	GCCGGC	2 cut(s)	427, 538
NarI	GGCGCC	1 cut(s)	540
NciI	CCSGG	1 cut(s)	755
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	1 cut(s)	489
NgoMIV	GCCGGC	2 cut(s)	425, 536
NlaIII	CATG	2 cut(s)	139, 598
NlaIV	GGNNCC	3 cut(s)	133, 541, 574
NmuCI	GTSAC	1 cut(s)	298
NspI	RCATGY	1 cut(s)	598
PaeR7I	CTCGAG	1 cut(s)	96
PciSI	GCTCTTC	1 cut(s)	53
PdiI	GCCGGC	2 cut(s)	427, 538
PfeI	GAWTC	1 cut(s)	483
PkrI	GCNGC	3 cut(s)	143, 196, 224
PleI	GAGTC	1 cut(s)	42
PluTI	GGCGCC	1 cut(s)	543
PpsI	GAGTC	1 cut(s)	42
Ppu21I	YACGTR	1 cut(s)	713
PsiI	TTATAA	1 cut(s)	524
PspN4I	GGNNCC	3 cut(s)	133, 541, 574
PspXI	VCTCGAGB	1 cut(s)	96
RsaI	GTAC	2 cut(s)	519, 685
RsaNI	GTAC	2 cut(s)	518, 684
SapI	GCTCTTC	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	567, 660
SatI	GCNGC	3 cut(s)	142, 195, 223
Sau3AI	GATC	1 cut(s)	489
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	755
SduI	GDGCHC	1 cut(s)	760
SfaNI	GCATC	1 cut(s)	112
SfoI	GGCGCC	1 cut(s)	541
Sfr274I	CTCGAG	1 cut(s)	96
SgrAI	CRCCGGYG	1 cut(s)	536
SlaI	CTCGAG	1 cut(s)	96
SmlI	CTYRAG	2 cut(s)	96, 333
SmoI	CTYRAG	2 cut(s)	96, 333
SpeI	ACTAGT	1 cut(s)	671
Sse9I	AATT	2 cut(s)	24, 616
SsiI	CCGC	3 cut(s)	141, 194, 222
SspDI	GGCGCC	1 cut(s)	539
SspMI	CTAG	1 cut(s)	672
StyD4I	CCNGG	1 cut(s)	753
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	6 cut(s)	77, 170, 298, 497, 688, 750
TaiI	ACGT	3 cut(s)	534, 586, 715
TaqI	TCGA	2 cut(s)	97, 381
TasI	AATT	2 cut(s)	24, 616
TauI	GCSGC	3 cut(s)	144, 197, 225
TfiI	GAWTC	1 cut(s)	483
Tru1I	TTAA	2 cut(s)	567, 660
Tru9I	TTAA	2 cut(s)	567, 660
TseFI	GTSAC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	2 cut(s)	18, 492
TspGWI	ACGGA	3 cut(s)	171, 395, 547
XceI	RCATGY	1 cut(s)	598
XhoI	CTCGAG	1 cut(s)	96
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.