FvH4_6g33460

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016488
Physical Location & Seq
Forward (+)
26500661 .. 26501858
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33460.t1

Sequence Viewer

Length: 744 bp
ATGATAGCTAATTCTATGTTTTCATCAGTAGCATTCACAGTGCTGGTGGCACTAATCGTCATCGACAATAACATTTCTGGTGCAATCGCTGGATATGATTTTGGACATGCCACATTTTATGGTGATATGAGGGGCAGAGGAACCGAAGGTGGATCTTGTGGATATGGTGATCCTTTCGCACAAGGATATGGGATTGCGACGACAGCCCTGAGCACTGTGCTCTACACTAGAGGCCAGAGTTGCGGAGCTTGTTATGAAATATACTGCGCGAATGATCCACAATGGTGTCTGCCGGGTACCATCAAAGTGACTGTAACTAACGAATGCCCAGGAGGTCCCTGCGCACCTCCTCAGAAACACTTTGATTTGACCATGCCAATGTTCTTGAAGATAGTCAAAGCCCCCCAAGCTGGGATTATTCCGATAGGGTTCCGAAGGACCTGGTGCACTAAGAGAGGAGGGATTAGGTTTGCGTTCGAGGGGAACCCTAACTTTCTACTGGTGTTGGTGTCTAATGTTGGAGGTGCTGGTGATGTGGTTGATGTCAAAATCAAGGGCTCGAGGGAAGCAACATGGTGGACAATGAAGCGCAACTGGGGACAGAAATGGGAGACTGATGGCAACTTGGTAGGGCAAAGCTTGGGGTTCCAGGTGACTACTAGTGATGGGAAATCGCTCTATTCTGATGGTGTTGCTCCTGCAAATTGGGCATATGGTCGAACGTACGTGGGAAGGAACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

248

Amino Acids

26.61

Weight (kDa)

8.6

Isoelectric Point (pI)

26.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 67 - 142 1.7e-16 Lytic transglycolase
Expansin_C PF01357 155 - 233 1.5e-25 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56320 AT5G56320
fragaria_vesca FvH4_3g45970 FvH4_6g33460
rosa_chinensis RchiOBHm_Chr5g0084081
rosa_laevigata RLG00000020030 RLG00000037080
rosa_multiflora Rmu_ssc0000372.1_g000092
rosa_roxburghii Rroxscaffold_1G00000560
rosa_rugosa Rorug05G0489000
rosa_samantha Rh5BG567100 Rh5CG588900 Rh5DG575300
rosa_wichuraiana Rw5G050370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 343
Acc65I GGTACC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 296
AccII CGCG 1 cut(s) 269
AciI CCGC 1 cut(s) 243
AclWI GGATC 3 cut(s) 160, 164, 269
AfaI GTAC 2 cut(s) 298, 725
AfiI CCNNNNNNNGG 2 cut(s) 410, 411
AgsI TTSAA 1 cut(s) 388
AhlI ACTAGT 1 cut(s) 659
AjnI CCWGG 3 cut(s) 328, 440, 648
AleI CACNNNNGTG 1 cut(s) 283
AluBI AGCT 4 cut(s) 8, 248, 410, 639
AluI AGCT 4 cut(s) 8, 248, 410, 639
Alw21I GWGCWC 3 cut(s) 215, 222, 449
Alw26I GTCTC 1 cut(s) 605
Alw44I GTGCAC 1 cut(s) 445
AlwI GGATC 3 cut(s) 160, 164, 269
Ama87I CYCGRG 1 cut(s) 559
AoxI GGCC 1 cut(s) 232
ApaLI GTGCAC 1 cut(s) 445
Asp718I GGTACC 1 cut(s) 296
AspLEI GCGC 3 cut(s) 269, 344, 591
AspS9I GGNCC 2 cut(s) 335, 438
AsuC2I CCSGG 1 cut(s) 294
AsuHPI GGTGA 4 cut(s) 134, 179, 542, 664
AvaI CYCGRG 1 cut(s) 559
AvaII GGWCC 2 cut(s) 335, 438
BaeGI GKGCMC 1 cut(s) 449
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 560
Bbv12I GWGCWC 3 cut(s) 215, 222, 449
BccI CCATC 4 cut(s) 308, 611, 659, 680
BciT130I CCWGG 3 cut(s) 330, 442, 650
BcnI CCSGG 1 cut(s) 294
BcoDI GTCTC 1 cut(s) 605
BcuI ACTAGT 1 cut(s) 659
BfaI CTAG 2 cut(s) 228, 660
Bme1390I CCNGG 4 cut(s) 294, 330, 442, 650
Bme18I GGWCC 2 cut(s) 335, 438
BmeT110I CYCGRG 1 cut(s) 559
BmgT120I GGNCC 2 cut(s) 335, 438
BmiI GGNNCC 6 cut(s) 142, 298, 337, 431, 485, 647
BmrFI CCNGG 4 cut(s) 294, 330, 442, 650
BmrI ACTGGG 1 cut(s) 604
BmuI ACTGGG 1 cut(s) 604
Bpu10I CCTNAGC 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 294
BsaAI YACGTR 1 cut(s) 727
BsaJI CCNNGG 1 cut(s) 328
Bsc4I CCNNNNNNNGG 2 cut(s) 410, 411
Bse1I ACTGG 2 cut(s) 504, 599
BseBI CCWGG 3 cut(s) 330, 442, 650
BseDI CCNNGG 1 cut(s) 328
BseLI CCNNNNNNNGG 2 cut(s) 410, 411
BseMII CTCAG 2 cut(s) 200, 365
BseNI ACTGG 2 cut(s) 504, 599
BseRI GAGGAG 2 cut(s) 339, 471
BseSI GKGCMC 1 cut(s) 449
BseYI CCCAGC 1 cut(s) 410
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 1 cut(s) 234
BshNI GGYRCC 1 cut(s) 296
BsiHKAI GWGCWC 3 cut(s) 215, 222, 449
BsiHKCI CYCGRG 1 cut(s) 559
BsiSI CCGG 1 cut(s) 293
BsiWI CGTACG 1 cut(s) 723
BslFI GGGAC 2 cut(s) 321, 612
BslI CCNNNNNNNGG 2 cut(s) 410, 411
BsmAI GTCTC 1 cut(s) 605
BsmFI GGGAC 2 cut(s) 321, 612
BsmI GAATGC 2 cut(s) 32, 329
BsnI GGCC 1 cut(s) 234
BsoBI CYCGRG 1 cut(s) 559
Bsp1286I GDGCHC 4 cut(s) 215, 222, 449, 560
Bsp143I GATC 3 cut(s) 152, 169, 274
BspACI CCGC 1 cut(s) 243
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 2 cut(s) 201, 364
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 6 cut(s) 142, 298, 337, 431, 485, 647
BspPI GGATC 3 cut(s) 160, 164, 269
BspT107I GGYRCC 1 cut(s) 296
BsrI ACTGG 2 cut(s) 504, 599
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 3 cut(s) 152, 169, 274
Bst2UI CCWGG 3 cut(s) 330, 442, 650
Bst4CI ACNGT 3 cut(s) 40, 217, 313
BstBAI YACGTR 1 cut(s) 727
BstDEI CTNAG 3 cut(s) 209, 351, 450
BstFNI CGCG 1 cut(s) 269
BstHHI GCGC 3 cut(s) 269, 344, 591
BstKTI GATC 3 cut(s) 155, 172, 277
BstMAI GTCTC 1 cut(s) 605
BstMBI GATC 3 cut(s) 152, 169, 274
BstMWI GCNNNNNNNGC 4 cut(s) 203, 240, 407, 707
BstNI CCWGG 3 cut(s) 330, 442, 650
BstNSI RCATGY 1 cut(s) 110
BstSCI CCNGG 4 cut(s) 292, 328, 440, 648
BstSLI GKGCMC 1 cut(s) 449
BstUI CGCG 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
BsuRI GGCC 1 cut(s) 234
BtsIMutI CAGTG 2 cut(s) 45, 213
CfoI GCGC 3 cut(s) 269, 344, 591
Cfr13I GGNCC 2 cut(s) 335, 438
CsiI ACCWGGT 1 cut(s) 440
Csp6I GTAC 2 cut(s) 297, 724
CviAII CATG 3 cut(s) 107, 373, 573
CviJI RGCY 8 cut(s) 8, 206, 234, 248, 401, 410, 558, 639
CviKI_1 RGCY 8 cut(s) 8, 206, 234, 248, 401, 410, 558, 639
CviQI GTAC 2 cut(s) 297, 724
DdeI CTNAG 3 cut(s) 209, 351, 450
DpnI GATC 3 cut(s) 154, 171, 276
DpnII GATC 3 cut(s) 152, 169, 274
Eco24I GRGCYC 1 cut(s) 560
Eco47I GGWCC 2 cut(s) 335, 438
Eco88I CYCGRG 1 cut(s) 559
EcoO109I RGGNCCY 2 cut(s) 335, 438
EcoRII CCWGG 3 cut(s) 328, 440, 648
EcoT38I GRGCYC 1 cut(s) 560
FaeI CATG 3 cut(s) 110, 376, 576
FaqI GGGAC 2 cut(s) 321, 612
FatI CATG 3 cut(s) 106, 372, 572
FauNDI CATATG 1 cut(s) 712
FriOI GRGCYC 1 cut(s) 560
FspBI CTAG 2 cut(s) 228, 660
FspI TGCGCA 1 cut(s) 343
GlaI GCGC 3 cut(s) 268, 343, 590
GsaI CCCAGC 1 cut(s) 414
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 293
HhaI GCGC 3 cut(s) 269, 344, 591
Hin1II CATG 3 cut(s) 110, 376, 576
Hin6I GCGC 3 cut(s) 267, 342, 589
HinP1I GCGC 3 cut(s) 267, 342, 589
HindIII AAGCTT 1 cut(s) 637
HpaII CCGG 1 cut(s) 293
HphI GGTGA 4 cut(s) 134, 179, 542, 664
Hpy166II GTNNAC 2 cut(s) 447, 579
Hpy188I TCNGA 4 cut(s) 354, 423, 434, 685
Hpy188III TCNNGA 1 cut(s) 385
Hpy8I GTNNAC 2 cut(s) 447, 579
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 3 cut(s) 140, 429, 726
HpyCH4III ACNGT 3 cut(s) 40, 217, 313
HpyCH4IV ACGT 2 cut(s) 722, 726
HpyCH4V TGCA 3 cut(s) 83, 447, 701
HpyF10VI GCNNNNNNNGC 4 cut(s) 203, 240, 407, 707
HpyF3I CTNAG 3 cut(s) 209, 351, 450
HpySE526I ACGT 2 cut(s) 722, 726
Hsp92II CATG 3 cut(s) 110, 376, 576
HspAI GCGC 3 cut(s) 267, 342, 589
KpnI GGTACC 1 cut(s) 300
Kzo9I GATC 3 cut(s) 152, 169, 274
LmnI GCTCC 2 cut(s) 245, 700
MabI ACCWGGT 1 cut(s) 440
MaeI CTAG 2 cut(s) 228, 660
MaeII ACGT 2 cut(s) 722, 726
MaeIII GTNAC 3 cut(s) 307, 313, 652
MalI GATC 3 cut(s) 154, 171, 276
MboI GATC 3 cut(s) 152, 169, 274
MboII GAAGA 1 cut(s) 400
MflI RGATCY 1 cut(s) 152
MhlI GDGCHC 4 cut(s) 215, 222, 449, 560
MluCI AATT 2 cut(s) 10, 703
MmeI TCCRAC 1 cut(s) 499
MslI CAYNNNNRTG 3 cut(s) 283, 305, 377
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 4 cut(s) 294, 330, 442, 650
Mva1269I GAATGC 2 cut(s) 32, 329
MvaI CCWGG 3 cut(s) 330, 442, 650
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 4 cut(s) 203, 240, 407, 707
NciI CCSGG 1 cut(s) 294
NdeI CATATG 1 cut(s) 712
NdeII GATC 3 cut(s) 152, 169, 274
NlaIII CATG 3 cut(s) 110, 376, 576
NlaIV GGNNCC 6 cut(s) 142, 298, 337, 431, 485, 647
NmuCI GTSAC 2 cut(s) 307, 652
NsbI TGCGCA 1 cut(s) 343
NspI RCATGY 1 cut(s) 110
OliI CACNNNNGTG 1 cut(s) 283
PaeR7I CTCGAG 1 cut(s) 559
PctI GAATGC 2 cut(s) 32, 329
Pfl23II CGTACG 1 cut(s) 723
Ppu21I YACGTR 1 cut(s) 727
PpuMI RGGWCCY 2 cut(s) 335, 438
Psp5II RGGWCCY 2 cut(s) 335, 438
Psp6I CCWGG 3 cut(s) 328, 440, 648
PspFI CCCAGC 1 cut(s) 410
PspGI CCWGG 3 cut(s) 328, 440, 648
PspLI CGTACG 1 cut(s) 723
PspN4I GGNNCC 6 cut(s) 142, 298, 337, 431, 485, 647
PspPI GGNCC 2 cut(s) 335, 438
PspPPI RGGWCCY 2 cut(s) 335, 438
PspXI VCTCGAGB 1 cut(s) 559
PsuI RGATCY 1 cut(s) 152
RsaI GTAC 2 cut(s) 298, 725
RsaNI GTAC 2 cut(s) 297, 724
RseI CAYNNNNRTG 3 cut(s) 283, 305, 377
Sau3AI GATC 3 cut(s) 152, 169, 274
Sau96I GGNCC 2 cut(s) 335, 438
ScrFI CCNGG 4 cut(s) 294, 330, 442, 650
SduI GDGCHC 4 cut(s) 215, 222, 449, 560
SexAI ACCWGGT 1 cut(s) 440
Sfr274I CTCGAG 1 cut(s) 559
SinI GGWCC 2 cut(s) 335, 438
SlaI CTCGAG 1 cut(s) 559
SmiMI CAYNNNNRTG 3 cut(s) 283, 305, 377
SmlI CTYRAG 1 cut(s) 559
SmoI CTYRAG 1 cut(s) 559
SpeI ACTAGT 1 cut(s) 659
Sse9I AATT 2 cut(s) 10, 703
SsiI CCGC 1 cut(s) 243
SspMI CTAG 2 cut(s) 228, 660
StyD4I CCNGG 4 cut(s) 292, 328, 440, 648
TaaI ACNGT 3 cut(s) 40, 217, 313
TaiI ACGT 2 cut(s) 725, 729
TaqI TCGA 4 cut(s) 63, 477, 560, 718
TasI AATT 2 cut(s) 10, 703
TscAI CASTG 2 cut(s) 45, 220
TseFI GTSAC 2 cut(s) 307, 652
Tsp45I GTSAC 2 cut(s) 307, 652
TspDTI ATGAA 3 cut(s) 12, 270, 599
TspRI CASTG 2 cut(s) 45, 220
VneI GTGCAC 1 cut(s) 445
VpaK11BI GGWCC 2 cut(s) 335, 438
XceI RCATGY 1 cut(s) 110
XhoI CTCGAG 1 cut(s) 559
XspI CTAG 2 cut(s) 228, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.