Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016488

Physical Location & Seq

Genomic Coordinates Reverse (-)

83405192 .. 83406703

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG588900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGATGAATATCGTACGTGCATCATATTTGTAGTCCTTCTTGCCATTTCACAGACTGTGAAGAGTTCTGGTAATGGGTGGACAAATGCTCACGCCACTTTCTATGGAGGCAGTGATGCTTCAGGGACAATGGGTGGGGCTTGTGGTTATGGAAATCTTTATAGCCAGGGGTATGGAACAAACACAGCTGCACTCAGTACTGCTTTGTTCAATAATGGGTTGAGTTGTGGAGGTTGCTATGAGATTAAATGTGTGAATGACAAACAATGGTGCTTACCAGGATCCATAGTAGTAACCGCAACTAATTTCTGCCCACCCAACAACGCTCTTCCTAATAACGCTGGAGGCTGGTGCAATCCTCCATTGCGTCATTTTGATCTATCTCAGCCTGTTTTTCAACACATTGCTCAATCCAAAGCCGGAATTATCCCTGTGCAATACAGAAGGGTTGGTTGTAGCAGGAAGGGTGGAATCAGATTTACAATCAATGGGCACTCCTACTTCAATCTGGTGCTTATAACCAATGTGGGTGGAGCTGGTGATCTGGTGAGTGTGTCTATTAAAGGTTCGAAAAGTGACAACGGTTGGATGGCCATGTCCCGGAACTGGGGTCAGAATTGGCAAAGCAACTCCTATCTTAATGGCCAAGCCCTTTCTTTCAAGGTTACAACCAGTGATGGACGCTCTCTTGTCTCCAACATTGTGGCTCCTCCCAACTGGTCTTTTGGTCAAACCTACACTGGAGGCCAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0016020 GO:0016043 GO:0022622 GO:0030312 GO:0032501 GO:0032502 GO:0042545 GO:0044464 GO:0045229 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

251

Amino Acids

26.8

Weight (kDa)

8.98

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	32 - 154	2.5e-07	EXPB1-like domain 1
DPBB_1	PF03330	62 - 147	2.5e-23	Lytic transglycolase
Expansin_C	PF01357	158 - 237	1.5e-31	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56320 AT5G56320
fragaria_vesca	FvH4_3g45970 FvH4_6g33460
rosa_chinensis	RchiOBHm_Chr5g0084081
rosa_laevigata	RLG00000020030 RLG00000037080
rosa_multiflora	Rmu_ssc0000372.1_g000092
rosa_roxburghii	Rroxscaffold_1G00000560
rosa_rugosa	Rorug05G0489000
rosa_samantha	Rh5BG567100 Rh5CG588900 Rh5DG575300
rosa_wichuraiana	Rw5G050370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	518
AciI	CCGC	1 cut(s)	297
AclWI	GGATC	2 cut(s)	276, 289
AcoI	YGGCCR	2 cut(s)	591, 643
AcuI	CTGAAG	1 cut(s)	105
AfaI	GTAC	2 cut(s)	16, 199
AfiI	CCNNNNNNNGG	3 cut(s)	600, 606, 607
AgsI	TTSAA	4 cut(s)	211, 398, 505, 661
AjnI	CCWGG	2 cut(s)	165, 277
AluBI	AGCT	2 cut(s)	188, 536
AluI	AGCT	2 cut(s)	188, 536
Alw26I	GTCTC	1 cut(s)	697
AlwI	GGATC	2 cut(s)	276, 289
AoxI	GGCC	3 cut(s)	591, 643, 745
ApeKI	GCWGC	1 cut(s)	188
AsuC2I	CCSGG	1 cut(s)	601
AsuHPI	GGTGA	2 cut(s)	551, 559
AsuII	TTCGAA	1 cut(s)	569
BaeGI	GKGCMC	1 cut(s)	495
BalI	TGGCCA	2 cut(s)	593, 645
BamHI	GGATCC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	2 cut(s)	583, 671
BciT130I	CCWGG	2 cut(s)	167, 279
BcnI	CCSGG	1 cut(s)	601
BcoDI	GTCTC	1 cut(s)	697
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
BmcAI	AGTACT	1 cut(s)	199
Bme1390I	CCNGG	3 cut(s)	167, 279, 601
BmiI	GGNNCC	2 cut(s)	283, 708
BmrFI	CCNGG	3 cut(s)	167, 279, 601
BmrI	ACTGGG	1 cut(s)	616
BmsI	GCATC	2 cut(s)	30, 106
BmuI	ACTGGG	1 cut(s)	616
BpmI	CTGGAG	1 cut(s)	363
Bpu14I	TTCGAA	1 cut(s)	569
BpuMI	CCSGG	1 cut(s)	601
BsaAI	YACGTR	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	3 cut(s)	600, 606, 607
Bse1I	ACTGG	5 cut(s)	611, 672, 722, 745, 748
Bse3DI	GCAATG	2 cut(s)	362, 402
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	2 cut(s)	167, 279
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	2 cut(s)	10, 594
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	3 cut(s)	600, 606, 607
BseMI	GCAATG	2 cut(s)	362, 402
BseMII	CTCAG	2 cut(s)	208, 398
BseNI	ACTGG	5 cut(s)	611, 672, 722, 745, 748
BseRI	GAGGAG	1 cut(s)	699
BseSI	GKGCMC	1 cut(s)	495
BseXI	GCAGC	1 cut(s)	175
BsgI	GTGCAG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	593, 645, 747
BsiSI	CCGG	2 cut(s)	420, 601
BsiWI	CGTACG	1 cut(s)	14
BslFI	GGGAC	2 cut(s)	139, 583
BslI	CCNNNNNNNGG	3 cut(s)	600, 606, 607
BsmAI	GTCTC	1 cut(s)	697
BsmFI	GGGAC	2 cut(s)	139, 583
BsnI	GGCC	3 cut(s)	593, 645, 747
Bsp119I	TTCGAA	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	3 cut(s)	281, 376, 541
BspACI	CCGC	1 cut(s)	297
BspANI	GGCC	3 cut(s)	593, 645, 747
BspCNI	CTCAG	2 cut(s)	207, 397
BspLI	GGNNCC	2 cut(s)	283, 708
BspPI	GGATC	2 cut(s)	276, 289
BspQI	GCTCTTC	1 cut(s)	333
BspT104I	TTCGAA	1 cut(s)	569
BsrDI	GCAATG	2 cut(s)	362, 402
BsrI	ACTGG	5 cut(s)	611, 672, 722, 745, 748
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	3 cut(s)	281, 376, 541
Bst2UI	CCWGG	2 cut(s)	167, 279
Bst4CI	ACNGT	2 cut(s)	58, 584
Bst6I	CTCTTC	2 cut(s)	56, 333
BstBAI	YACGTR	1 cut(s)	18
BstBI	TTCGAA	1 cut(s)	569
BstDEI	CTNAG	2 cut(s)	194, 384
BstF5I	GGATG	2 cut(s)	10, 594
BstKTI	GATC	3 cut(s)	284, 379, 544
BstMAI	GTCTC	1 cut(s)	697
BstMBI	GATC	3 cut(s)	281, 376, 541
BstNI	CCWGG	2 cut(s)	167, 279
BstSCI	CCNGG	3 cut(s)	165, 277, 599
BstSLI	GKGCMC	1 cut(s)	495
BstV1I	GCAGC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	281
BstXI	CCANNNNNNTGG	2 cut(s)	173, 703
BstYI	RGATCY	1 cut(s)	281
BsuRI	GGCC	3 cut(s)	593, 645, 747
BtsCI	GGATG	2 cut(s)	10, 594
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	3 cut(s)	118, 679, 738
CseI	GACGC	2 cut(s)	356, 690
Csp6I	GTAC	2 cut(s)	15, 198
CspCI	CAANNNNNGTGG	2 cut(s)	511, 546
CviAII	CATG	1 cut(s)	595
CviQI	GTAC	2 cut(s)	15, 198
DdeI	CTNAG	2 cut(s)	194, 384
DpnI	GATC	3 cut(s)	283, 378, 543
DpnII	GATC	3 cut(s)	281, 376, 541
EaeI	YGGCCR	2 cut(s)	591, 643
Eam1104I	CTCTTC	2 cut(s)	56, 333
EarI	CTCTTC	2 cut(s)	56, 333
Eco57I	CTGAAG	1 cut(s)	105
EcoRII	CCWGG	2 cut(s)	165, 277
FaeI	CATG	1 cut(s)	598
FaiI	YATR	9 cut(s)	26, 105, 150, 162, 174, 240, 287, 518, 596
FaqI	GGGAC	2 cut(s)	139, 583
FatI	CATG	1 cut(s)	594
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	2 cut(s)	17, 601
Fsp4HI	GCNGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	3 cut(s)	593, 645, 747
HapII	CCGG	2 cut(s)	420, 601
HgaI	GACGC	2 cut(s)	356, 690
Hin1II	CATG	1 cut(s)	598
HinfI	GANTC	1 cut(s)	471
HpaII	CCGG	2 cut(s)	420, 601
HphI	GGTGA	2 cut(s)	551, 559
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	2 cut(s)	476, 615
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	3 cut(s)	47, 438, 457
HpyCH4III	ACNGT	2 cut(s)	58, 584
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	4 cut(s)	21, 191, 354, 436
HpyF3I	CTNAG	2 cut(s)	194, 384
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	598
Kzo9I	GATC	3 cut(s)	281, 376, 541
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	2 cut(s)	533, 712
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	2 cut(s)	30, 106
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	3 cut(s)	292, 575, 664
MalI	GATC	3 cut(s)	283, 378, 543
MboI	GATC	3 cut(s)	281, 376, 541
MboII	GAAGA	2 cut(s)	73, 320
MflI	RGATCY	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	495
MlsI	TGGCCA	2 cut(s)	593, 645
MluCI	AATT	3 cut(s)	304, 423, 616
MluNI	TGGCCA	2 cut(s)	593, 645
MmeI	TCCRAC	2 cut(s)	566, 720
MnlI	CCTC	6 cut(s)	101, 224, 338, 369, 720, 737
Mox20I	TGGCCA	2 cut(s)	593, 645
MscI	TGGCCA	2 cut(s)	593, 645
MseI	TTAA	3 cut(s)	246, 561, 639
Msp20I	TGGCCA	2 cut(s)	593, 645
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	2 cut(s)	420, 601
MspR9I	CCNGG	3 cut(s)	167, 279, 601
MvaI	CCWGG	2 cut(s)	167, 279
NciI	CCSGG	1 cut(s)	601
NdeII	GATC	3 cut(s)	281, 376, 541
NlaIII	CATG	1 cut(s)	598
NlaIV	GGNNCC	2 cut(s)	283, 708
NmuCI	GTSAC	1 cut(s)	575
NspV	TTCGAA	1 cut(s)	569
PciSI	GCTCTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	471
Pfl23II	CGTACG	1 cut(s)	14
PfoI	TCCNGGA	1 cut(s)	599
PkrI	GCNGC	1 cut(s)	190
Ppu21I	YACGTR	1 cut(s)	18
PsiI	TTATAA	1 cut(s)	518
Psp6I	CCWGG	2 cut(s)	165, 277
PspGI	CCWGG	2 cut(s)	165, 277
PspLI	CGTACG	1 cut(s)	14
PspN4I	GGNNCC	2 cut(s)	283, 708
PsuI	RGATCY	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	2 cut(s)	16, 199
RsaNI	GTAC	2 cut(s)	15, 198
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	3 cut(s)	246, 561, 639
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	3 cut(s)	281, 376, 541
ScaI	AGTACT	1 cut(s)	199
ScrFI	CCNGG	3 cut(s)	167, 279, 601
SduI	GDGCHC	1 cut(s)	495
SetI	ASST	7 cut(s)	20, 190, 235, 538, 568, 666, 737
SfaNI	GCATC	2 cut(s)	30, 106
SfuI	TTCGAA	1 cut(s)	569
Sse9I	AATT	3 cut(s)	304, 423, 616
SsiI	CCGC	1 cut(s)	297
StyD4I	CCNGG	3 cut(s)	165, 277, 599
TaaI	ACNGT	2 cut(s)	58, 584
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	569
TasI	AATT	3 cut(s)	304, 423, 616
TatI	WGTACW	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	471
Tru1I	TTAA	3 cut(s)	246, 561, 639
Tru9I	TTAA	3 cut(s)	246, 561, 639
TscAI	CASTG	3 cut(s)	118, 679, 745
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	1 cut(s)	21
TspRI	CASTG	3 cut(s)	118, 679, 745
ZrmI	AGTACT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.