Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020166

Physical Location & Seq

Genomic Coordinates Forward (+)

23295652 .. 23296776

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGACTACCAGCCAAACACATCCCTACGTCTAAGCCTACCAAGTTACAAGAACCACCAACTAAACCTAGAACTTGTTCTCGAGCCTTCTTCCATGTCTTCTTCTTCATCTTCTTCCACGAACTCATCATCATGTTTGGAGCAGCCTAGGGTATTCTCATGTAACTATTGTCAAAGAAAGTTTTACAGCTCTCAAGCTCTTGGTGGTCATCAAAACGCTCATAAGCTTGAGAGAACCTTAGCCAAGAAGAGTCGAGAACTCTTTAGATCCTCAAACACTGTTGATTCTGATCAGCCTTACCCGTTCTCCGGTCGCTTTGAGCTTTACGGCCGTGGCTACCAAGGATTTCTCGAAAGTGGCGGCTCGAGGGACTTCTCCGCCCGCCGTGTGCCGGAGAGTGGTCTTGATCAGGATCAGGAGAAGAGTCACCTTGACTTATCCTTAAGGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060860 GO:0060862 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

150

Amino Acids

16.96

Weight (kDa)

8.46

Isoelectric Point (pI)

64.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57520
malus_domestica	MD00G1113500.v1.1 MD13G1269700.v1.1
prunus_persica	Prupe.1G088000_v2.0.a1
pyrus_communis	pycom13g22270 pycom16g22100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	360, 378, 382
AclWI	GGATC	2 cut(s)	261, 420
AcoI	YGGCCR	1 cut(s)	328
AfiI	CCNNNNNNNGG	3 cut(s)	308, 391, 398
AflII	CTTAAG	1 cut(s)	442
AluBI	AGCT	4 cut(s)	189, 197, 226, 322
AluI	AGCT	4 cut(s)	189, 197, 226, 322
AlwI	GGATC	2 cut(s)	261, 420
Ama87I	CYCGRG	2 cut(s)	80, 364
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	1 cut(s)	142
Asp700I	GAANNNNTTC	1 cut(s)	75
AspA2I	CCTAGG	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	419
AvaI	CYCGRG	2 cut(s)	80, 364
AvrII	CCTAGG	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	154
BceAI	ACGGC	3 cut(s)	315, 343, 369
BclI	TGATCA	2 cut(s)	289, 406
BfaI	CTAG	2 cut(s)	68, 147
BfrI	CTTAAG	1 cut(s)	442
BisI	GCNGC	2 cut(s)	143, 361
BlnI	CCTAGG	1 cut(s)	146
BlsI	GCNGC	2 cut(s)	144, 362
BmeT110I	CYCGRG	2 cut(s)	80, 364
BpiI	GAAGAC	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	238
BpuEI	CTTGAG	2 cut(s)	177, 248
BsaBI	GATNNNNATC	2 cut(s)	288, 411
BsaJI	CCNNGG	3 cut(s)	146, 331, 340
BsaWI	WCCGGW	1 cut(s)	308
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 391, 398
Bse8I	GATNNNNATC	2 cut(s)	288, 411
BseDI	CCNNGG	3 cut(s)	146, 331, 340
BseGI	GGATG	1 cut(s)	20
BseJI	GATNNNNATC	2 cut(s)	288, 411
BseLI	CCNNNNNNNGG	3 cut(s)	308, 391, 398
BseX3I	CGGCCG	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	154
Bsh1285I	CGRYCG	2 cut(s)	313, 331
BshFI	GGCC	1 cut(s)	330
BsiEI	CGRYCG	2 cut(s)	313, 331
BsiHKCI	CYCGRG	2 cut(s)	80, 364
BsiSI	CCGG	2 cut(s)	309, 392
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	3 cut(s)	308, 391, 398
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	330
BsoBI	CYCGRG	2 cut(s)	80, 364
Bsp143I	GATC	4 cut(s)	266, 289, 406, 412
BspACI	CCGC	3 cut(s)	360, 378, 382
BspANI	GGCC	1 cut(s)	330
BspPI	GGATC	2 cut(s)	261, 420
BspTI	CTTAAG	1 cut(s)	442
BssECI	CCNNGG	3 cut(s)	146, 331, 340
BssMI	GATC	4 cut(s)	266, 289, 406, 412
BssT1I	CCWWGG	2 cut(s)	146, 340
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	2 cut(s)	242, 416
BstAFI	CTTAAG	1 cut(s)	442
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	2 cut(s)	32, 238
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	1 cut(s)	20
BstKTI	GATC	4 cut(s)	269, 292, 409, 415
BstMBI	GATC	4 cut(s)	266, 289, 406, 412
BstMCI	CGRYCG	2 cut(s)	313, 331
BstV1I	GCAGC	1 cut(s)	154
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BstZI	CGGCCG	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	330
BtgI	CCRYGG	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	382
CviAII	CATG	3 cut(s)	94, 132, 159
DdeI	CTNAG	2 cut(s)	32, 238
DpnI	GATC	4 cut(s)	268, 291, 408, 414
DpnII	GATC	4 cut(s)	266, 289, 406, 412
EaeI	YGGCCR	1 cut(s)	328
EagI	CGGCCG	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	242, 416
EarI	CTCTTC	2 cut(s)	242, 416
EciI	GGCGGA	1 cut(s)	367
EclXI	CGGCCG	1 cut(s)	328
Eco130I	CCWWGG	2 cut(s)	146, 340
Eco52I	CGGCCG	1 cut(s)	328
Eco88I	CYCGRG	2 cut(s)	80, 364
EcoT14I	CCWWGG	2 cut(s)	146, 340
ErhI	CCWWGG	2 cut(s)	146, 340
FaeI	CATG	3 cut(s)	97, 135, 162
FaiI	YATR	4 cut(s)	95, 133, 160, 222
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	3 cut(s)	93, 131, 158
FauI	CCCGC	1 cut(s)	389
FbaI	TGATCA	2 cut(s)	289, 406
Fnu4HI	GCNGC	2 cut(s)	143, 361
FokI	GGATG	1 cut(s)	7
Fsp4HI	GCNGC	2 cut(s)	143, 361
FspBI	CTAG	2 cut(s)	68, 147
GluI	GCNGC	2 cut(s)	143, 361
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	2 cut(s)	309, 392
Hin1II	CATG	3 cut(s)	97, 135, 162
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	3 cut(s)	250, 284, 424
HpaII	CCGG	2 cut(s)	309, 392
HphI	GGTGA	1 cut(s)	419
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	6 cut(s)	80, 254, 350, 404, 410, 416
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	28
HpyF3I	CTNAG	2 cut(s)	32, 238
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	3 cut(s)	97, 135, 162
Ksp22I	TGATCA	2 cut(s)	289, 406
Kzo9I	GATC	4 cut(s)	266, 289, 406, 412
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	5 cut(s)	23, 322, 395, 401, 405
Lsp1109I	GCAGC	1 cut(s)	154
MaeI	CTAG	2 cut(s)	68, 147
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	3 cut(s)	44, 161, 425
MalI	GATC	4 cut(s)	268, 291, 408, 414
MboI	GATC	4 cut(s)	266, 289, 406, 412
MboII	GAAGA	8 cut(s)	81, 90, 93, 96, 102, 105, 259, 433
MflI	RGATCY	1 cut(s)	266
MlyI	GAGTC	2 cut(s)	259, 433
MnlI	CCTC	2 cut(s)	280, 360
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	1 cut(s)	443
MslI	CAYNNNNRTG	1 cut(s)	130
MspCI	CTTAAG	1 cut(s)	442
MspI	CCGG	2 cut(s)	309, 392
NdeII	GATC	4 cut(s)	266, 289, 406, 412
NlaIII	CATG	3 cut(s)	97, 135, 162
NmuCI	GTSAC	1 cut(s)	425
PaeR7I	CTCGAG	2 cut(s)	80, 364
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	144, 362
PleI	GAGTC	2 cut(s)	258, 432
PpsI	GAGTC	2 cut(s)	258, 432
PspXI	VCTCGAGB	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	266
RseI	CAYNNNNRTG	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	2 cut(s)	143, 361
Sau3AI	GATC	4 cut(s)	266, 289, 406, 412
SchI	GAGTC	2 cut(s)	259, 433
SetI	ASST	8 cut(s)	31, 69, 191, 199, 228, 239, 324, 432
Sfr274I	CTCGAG	2 cut(s)	80, 364
SlaI	CTCGAG	2 cut(s)	80, 364
SmiMI	CAYNNNNRTG	1 cut(s)	130
SmlI	CTYRAG	5 cut(s)	80, 192, 227, 364, 442
SmoI	CTYRAG	5 cut(s)	80, 192, 227, 364, 442
SsiI	CCGC	3 cut(s)	360, 378, 382
SspMI	CTAG	2 cut(s)	68, 147
StyI	CCWWGG	2 cut(s)	146, 340
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	4 cut(s)	81, 253, 351, 365
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	283
Vha464I	CTTAAG	1 cut(s)	442
XhoI	CTCGAG	2 cut(s)	80, 364
XmaJI	CCTAGG	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	2 cut(s)	68, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.